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Receptor
PDB id Resolution Class Description Source Keywords
3N5C 1.82 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF ARF6DELTA13 COMPLEXED WITH GDP HOMO SAPIENS SMALL G PROTEIN ; SMALL GTP-BINDING PROTEIN ARF ADP-RIBOSYFACTOR 6 TRAFFIC ENDOCYTOSIS UNFOLDED PROTEIN PROTEIN T
Ref.: SAXS AND X-RAY CRYSTALLOGRAPHY SUGGEST AN UNFOLDING FOR THE GDP/GTP CONFORMATIONAL SWITCH OF THE SMALL ARF6. J.MOL.BIOL. V. 402 696 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:1;
A:180;
B:2;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
35.453 Cl [Cl-]
GDP A:200;
B:200;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N5C 1.82 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF ARF6DELTA13 COMPLEXED WITH GDP HOMO SAPIENS SMALL G PROTEIN ; SMALL GTP-BINDING PROTEIN ARF ADP-RIBOSYFACTOR 6 TRAFFIC ENDOCYTOSIS UNFOLDED PROTEIN PROTEIN T
Ref.: SAXS AND X-RAY CRYSTALLOGRAPHY SUGGEST AN UNFOLDING FOR THE GDP/GTP CONFORMATIONAL SWITCH OF THE SMALL ARF6. J.MOL.BIOL. V. 402 696 2010
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N5C; Ligand: GDP; Similar sites found with APoc: 595
This union binding pocket(no: 1) in the query (biounit: 3n5c.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2GJ8 ALF GDP None
2 1CLU DBG None
3 1XX6 ADP None
4 2F3R G5P None
5 1UGY GLA GLC None
6 1CMC SAM None
7 5HGZ ACO None
8 1KUJ MMA None
9 5HH0 COA None
10 1JAC AMG None
11 1D2E GDP 1.23457
12 5XKT GNP 1.23457
13 2W58 ADP 1.85185
14 1UJ2 ADP 1.85185
15 1UJ2 C5P 1.85185
16 1XEX ATP 1.85185
17 3DC4 ADP 1.85185
18 1KO8 6PG 1.85185
19 3KTA AP5 1.85185
20 2ZPT A3P 1.85185
21 2D2F ADP 1.85185
22 1Q20 A3P 1.85185
23 1Q20 PLO 1.85185
24 1BO4 COA 1.85185
25 6D5E GNP 2.46914
26 6BVJ GNP 2.46914
27 6D5J GNP 2.46914
28 6BVL GNP 2.46914
29 6D59 GNP 2.46914
30 6BVI GNP 2.46914
31 6D56 GNP 2.46914
32 6D55 GNP 2.46914
33 6D5H GNP 2.46914
34 6D5L GNP 2.46914
35 6BVK GNP 2.46914
36 6D5G GNP 2.46914
37 6BVM GNP 2.46914
38 6D5V GNP 2.46914
39 1FP6 ADP 2.46914
40 1NVV GNP 2.46914
41 6D5M GNP 2.46914
42 5ZBR ANP 2.46914
43 4PJ3 ANP 2.46914
44 4QRH 0O2 2.46914
45 4ITM ATP 2.46914
46 4H6U ACO 2.46914
47 2C5L GTP 2.5641
48 1KK1 GNP 3.08642
49 2C78 GNP 3.08642
50 2C77 GNP 3.08642
51 1TQ4 GDP 3.08642
52 3ZS9 ADP ALF 3.08642
53 2WOJ ADP ALF 3.08642
54 3A4M ADP 3.08642
55 2IXE ATP 3.08642
56 3P4X ADP 3.08642
57 5LB3 ADP 3.08642
58 5LLB 6YZ 3.08642
59 2DPY ADP 3.08642
60 5MEX SZZ 3.08642
61 4KBF AMP 3.08642
62 5EP2 AZU 3.08642
63 5MEX PAP 3.08642
64 4M7V NAP 3.08642
65 3ITJ CIT 3.08642
66 2R5N TPP 3.08642
67 2R5N R5P 3.08642
68 2R5N RP5 3.08642
69 2B4D COA 3.08642
70 1Q19 APC 3.08642
71 4NSQ COA 3.68421
72 3ZQ6 ADP ALF 3.7037
73 5U32 GDP 3.7037
74 1IWE IMP 3.7037
75 5L3W GDP 3.7037
76 1NJF AGS 3.7037
77 1SVM ATP 3.7037
78 2C9O ADP 3.7037
79 3BOS CDP 3.7037
80 4QM7 GTP 3.7037
81 2BEK ATP 3.7037
82 4BFW ZVW 3.7037
83 4TL6 ANP 3.7037
84 1JJV ATP 3.7037
85 4PX9 ADP 3.7037
86 1NJF ADP 3.7037
87 1NHX FTB 3.7037
88 1NHX PEP 3.7037
89 2B8T THM 3.7037
90 2GMV UN8 3.7037
91 2GMV PEP 3.7037
92 1AQU A3P 3.7037
93 2JJK R15 3.7037
94 4AF0 IMP 3.7037
95 3BER AMP 3.7037
96 2I4I AMP 3.7037
97 2VBQ BSJ 4.24242
98 4RD0 GDP 4.32099
99 2QN6 GDP 4.32099
100 2RCN GDP 4.32099
101 2XT3 ADP 4.32099
102 3BFV ADP 4.32099
103 2ZFI ADP 4.32099
104 3ZFD ANP 4.32099
105 2RGX AP5 4.32099
106 1E2K TMC 4.32099
107 2NCD ADP 4.32099
108 4K81 GTP 4.32099
109 4WZ6 ATP 4.32099
110 4TTQ ATP 4.32099
111 4AG5 ADP 4.32099
112 5I34 GDP 4.32099
113 4GOX A3P 4.32099
114 1D2N ANP 4.32099
115 2IS6 ADP 4.32099
116 1NY5 ADP 4.32099
117 4LJ9 ACP 4.32099
118 6DEF GCP 4.32099
119 1W5T ANP 4.32099
120 3DKP ADP 4.32099
121 1W5T ADP 4.32099
122 1VHT BA3 4.32099
123 3QVV 3QV 4.32099
124 3QVV A3P 4.32099
125 5E5U MLI 4.32099
126 4HUT ATP 4.32099
127 2VWT PYR 4.32099
128 5WS9 ATP 4.32099
129 2V2V V12 4.32099
130 4BR5 ANP 4.32099
131 3IQE F42 4.32099
132 3VPB ADP 4.32099
133 2BVN GNP 4.83461
134 1D8T GDP 4.83461
135 1SKQ GDP 4.93827
136 3EC1 GDP 4.93827
137 1SVI GDP 4.93827
138 4LPS GDP 4.93827
139 5KUT GDP 4.93827
140 3E70 GDP 4.93827
141 1XP8 AGS 4.93827
142 3B5J 12D 4.93827
143 1LVK MNT BEF 4.93827
144 1V8K ANP 4.93827
145 1YTM ATP 4.93827
146 1IN4 ADP 4.93827
147 2Q2Y ADP 4.93827
148 2Q2Y MKR 4.93827
149 2HF9 GSP 4.93827
150 1RRC ADP 4.93827
151 4HSE ADP 4.93827
152 1XKV ATP 4.93827
153 1OS1 ATP 4.93827
154 1OS1 PYR 4.93827
155 3QKT ANP 4.93827
156 5Y6N ADP 4.93827
157 5BQ5 ADP BEF 4.93827
158 2Z5F A3P 4.93827
159 2ZPA ADP 4.93827
160 1J99 AND 4.93827
161 2D7D ADP 4.93827
162 5ZB0 ADP 4.93827
163 5ZB0 TYD 4.93827
164 3VM7 GLC 4.93827
165 2ZW5 COA 4.93827
166 3F8K COA 5
167 2UZI GTP 5.26316
168 2Y65 ADP 5.55556
169 3IIJ ADP 5.55556
170 1BG2 ADP 5.55556
171 2FAH GDP 5.55556
172 3H4S ADP 5.55556
173 4FRZ ADP 5.55556
174 4IOK ADP 5.55556
175 4IOK XPO 5.55556
176 4FCW ADP 5.55556
177 3BFX A3P 5.55556
178 4GBM A3P 5.55556
179 5TIV A3P 5.55556
180 6C90 ADP 5.55556
181 2ZE7 DST 5.55556
182 2ZE7 AMP 5.55556
183 1OYY AGS 5.55556
184 1X8J A3P 5.55556
185 5H4S RAM 5.55556
186 2GWH A3P 5.55556
187 2FSH ANP 5.55556
188 1CJW COT 5.55556
189 1S7N COA 5.55556
190 1KUV CA5 5.55556
191 1QHH ATP 5.55556
192 4GDX GLU 5.55556
193 2HCJ GDP 5.67164
194 1F2U ATP 6.04027
195 1WQ1 GDP 6.17284
196 4LC1 GDP 6.17284
197 4NE2 SH2 6.17284
198 4NE2 ADP 6.17284
199 6B8B ADP 6.17284
200 4ZG4 VO4 ADP 6.17284
201 1OXV ANP 6.17284
202 4ZNL BEF ADP 6.17284
203 2QG6 NMN 6.17284
204 2YOH WMJ 6.17284
205 3QXC ATP 6.17284
206 2QQ0 ANP 6.17284
207 2QQ0 THM 6.17284
208 2QQ0 TMP 6.17284
209 2QQ0 ADP 6.17284
210 1UKZ ADP 6.17284
211 3DZD ADP 6.17284
212 1QF9 C5P 6.17284
213 1QF9 ADP 6.17284
214 1QF9 ALF 6.17284
215 3KJI ADP 6.17284
216 2XAU ADP 6.17284
217 4WOP CTP 6.17284
218 1Z6T ADP 6.17284
219 3B9Q MLI 6.17284
220 1FNN ADP 6.17284
221 5NM7 GLY 6.17284
222 3MGB PAP 6.17284
223 3RC3 ANP 6.17284
224 1WQ1 AF3 6.17284
225 1BZL FAD 6.17284
226 4ZDJ UTP 6.17284
227 4D42 NAP 6.17284
228 4D42 W0I 6.17284
229 1GXU 2HP 6.59341
230 1YRB GDP 6.79012
231 2WIC GNP 6.79012
232 3WXM GTP 6.79012
233 2QEN ADP 6.79012
234 1QF5 RPL 6.79012
235 1QF5 GDP 6.79012
236 1XMV ADP 6.79012
237 1P9B GDP 6.79012
238 2ZR9 DTP 6.79012
239 2VB6 ADP BEF 6.79012
240 3FB4 AP5 6.79012
241 1S3G AP5 6.79012
242 1JI0 ATP 6.79012
243 5UIV ADP 6.79012
244 4MKG AP5 6.79012
245 4MKF AP5 6.79012
246 4X8O AP5 6.79012
247 5ZXD ATP 6.79012
248 2VVG ADP 6.79012
249 4PFO ADP 6.79012
250 1AKY AP5 6.79012
251 1P72 ADP 6.79012
252 1DAK DPU 6.79012
253 1DAK ADP 6.79012
254 1G41 ADP 6.79012
255 4TMK T5A 6.79012
256 4IHQ ADP 6.79012
257 1G3M A3P 6.79012
258 1G3M PCQ 6.79012
259 4JD3 PLM 6.79012
260 4JD3 COA 6.79012
261 1BOB ACO 6.79012
262 4NON GDP 7.40741
263 5HCN GCP 7.40741
264 3COB ADP 7.40741
265 3UIE ANP 7.40741
266 3NHB ADP 7.40741
267 1F5N GNP 7.40741
268 2B8W ALF 5GP 7.40741
269 5L3R GCP 7.40741
270 5BYK A3P 7.40741
271 5BYK OAQ 7.40741
272 2OG2 MLI 7.40741
273 5MZN ADP 7.40741
274 1QSN COA 7.40741
275 4B47 GDP 8.02469
276 4R98 GNH 8.02469
277 5L3S GNP 8.02469
278 5L3V GDP 8.02469
279 4KFU ACP 8.02469
280 2WHX ADP 8.02469
281 1SQ5 ADP 8.02469
282 4NU0 AP5 8.02469
283 5X40 ACP 8.02469
284 2JLR ANP 8.02469
285 5EXT ADP 8.02469
286 1JJ7 ADP 8.02469
287 1R6B ADP 8.02469
288 4QOS ADP 8.02469
289 2CHG ANP 8.02469
290 5I0H ADP BEF 8.02469
291 4R2I ANP 8.02469
292 5HV7 RBL 8.02469
293 5L3S G 8.02469
294 3IUY AMP 8.02469
295 4AVB ACO 8.02469
296 4CVN ADP 8.0292
297 5FG3 GDP 8.64198
298 5YT0 GDP 8.64198
299 1DAR GDP 8.64198
300 3KUD GDP 8.64198
301 4HI0 GDP 8.64198
302 4BQS ADP 8.64198
303 4BQS K2Q 8.64198
304 3TMK T5A 8.64198
305 5Z69 AGS 8.64198
306 3QF7 ANP 8.64198
307 1G6H ADP 8.64198
308 4YS0 ADP 8.64198
309 5KF9 ACO 8.64198
310 2IVF MD1 8.64198
311 1LFD GNP 9.1954
312 1WF3 GNP 9.25926
313 3DDC GNP 9.25926
314 3PQC GDP 9.25926
315 1M7G ADX 9.25926
316 3W5J GDP 9.25926
317 1M7G AV2 9.25926
318 1M7G ADP 9.25926
319 3DEF GDP 9.25926
320 5GVR LMR 9.25926
321 3TBK ANP 9.25926
322 3CV2 OXL 9.25926
323 1G7S GDP 9.87654
324 4XTR ATP 9.87654
325 4XVU ATP 9.87654
326 4XTR ADP 9.87654
327 1CR1 TTP 9.87654
328 1ZIN AP5 9.87654
329 1W7J ADP BEF 9.87654
330 1F9V ADP 9.87654
331 4IDN GNP 9.87654
332 2AWN ADP 9.87654
333 1Z83 AP5 9.87654
334 4IEE AGS 9.87654
335 3B7G ANP 9.87654
336 1T8U UAP SGN IDS SGN 9.87654
337 1T8U A3P 9.87654
338 4U00 ADP 10.4938
339 1W0J ADP 10.4938
340 4Q1A 2XZ 10.4938
341 4Q1A UDP 10.4938
342 4NCN GTP 10.4938
343 1W0J ADP BEF 10.4938
344 5WRJ A3P 10.4938
345 5WRI A3P 10.4938
346 4UXH T5A 10.4938
347 4A4Z ANP 10.4938
348 3BD9 A3P 10.4938
349 2PZ8 APC 10.4938
350 2O0J ADP 10.4938
351 1B0U ATP 10.687
352 5M04 GDP 11.1111
353 2GKS ADP 11.1111
354 5KSZ GCP 11.1111
355 3FYH ADP 11.1111
356 5TSH ADP 11.1111
357 5TSH ANP 11.1111
358 2GDJ ANP 11.1111
359 1T5C ADP 11.1111
360 6B4K ANP 11.1111
361 2JAQ DCP 11.1111
362 1VKJ A3P 11.1111
363 4DDY DN6 11.1111
364 3MD0 GDP 11.7284
365 3TK1 GDP 11.7284
366 4P4T GDP 11.7284
367 1NN5 2DT 11.7284
368 1NN5 ANP 11.7284
369 1IHU AF3 11.7284
370 1IHU ADP 11.7284
371 1G3Q ADP 11.7284
372 1ION ADP 11.7284
373 1G6O ADP 11.7284
374 1U0J ADP 11.7284
375 4IXH IMP 11.7284
376 1MKY GDP 12.3457
377 5AK0 8V1 12.3457
378 5N69 ADP 12.3457
379 4R43 GDP 12.3457
380 4YRY FAD 12.3457
381 1X1R GDP 12.963
382 1G7C 5GP 12.963
383 4D81 ADP 12.963
384 3FVQ ATP 12.963
385 1OFH ADP 12.963
386 4OI4 ATP 12.963
387 1NST A3P 12.963
388 1LVG ADP 13.5802
389 2PEZ DAT 13.5802
390 2PEZ GGZ 13.5802
391 3FWY ADP 13.5802
392 3VX3 ADP 13.5802
393 1W4R TTP 13.5802
394 2ORV 4TA 13.5802
395 2ZJ5 ADP 13.5802
396 2V5K OXM 13.5802
397 2JEV NHQ 13.5802
398 1X6V ADP 14.1975
399 2OFW ADX 14.1975
400 3HU3 AGS 14.1975
401 4WZA ACP 14.1975
402 4WZA ADP 14.1975
403 2PL3 ADP 14.1975
404 1OE0 TTP 14.1975
405 2J5V PCA 14.1975
406 3H86 AP5 14.5833
407 3ZIA ATP 14.7541
408 3ZIA ADP 14.7541
409 1L2T ATP 14.8148
410 1H65 GDP 14.8148
411 2CDN ADP 15.4321
412 2V7Q ATP 16
413 2CK3 ANP 16
414 2CK3 ADP 16
415 2V7Q ADP 16
416 6G14 G4P 16.0494
417 1PUJ GNP 17.284
418 3Q85 GNP 17.284
419 6FA4 GNP 17.284
420 5TAR GDP 17.9012
421 5O2T GSP 17.9012
422 5WLB GNP 17.9012
423 5TB5 GDP 17.9012
424 5UQW GDP 17.9012
425 1RJ9 GCP 18.5185
426 2IYL GDP 18.5185
427 1MH1 GNP 19.1358
428 2W2X GSP 19.1358
429 4U5X GNP 19.1358
430 1G4U GDP 19.1358
431 1ZUI SKM 19.1358
432 2BIF SIN 19.1358
433 2BIF ANP 19.1358
434 1YQT ADP 19.1358
435 5YV5 ADP 19.1358
436 2J0V GDP 19.7531
437 3RLF ANP 19.7531
438 2VHJ ADP 19.7531
439 3MJY IJZ 19.7531
440 3MJY FMN 19.7531
441 2KIN ADP 20
442 1DS6 GDP 20.9877
443 2CE7 ADP 20.9877
444 4YMU ATP 20.9877
445 5BN3 ADP 21.6049
446 2GK6 ADP 22.2222
447 1M7B GTP 22.8395
448 1GWN GTP 22.8395
449 5KSP GDP 22.8395
450 6AU6 GDP 24.0741
451 1CS4 GSP 24.0741
452 2XTZ GSP 24.0741
453 2ZEJ GDP 24.0741
454 3REF GDP 24.0741
455 6CS8 F9Y 24.0741
456 3A1S GDP 24.4186
457 3CH5 GDP 24.6914
458 4HAT GNP 24.6914
459 5UWP GNP 24.6914
460 5DIF GNP 24.6914
461 5UWQ GNP 24.6914
462 5UWI GNP 24.6914
463 5UWU GNP 24.6914
464 3GJ3 GDP 24.6914
465 6CIT GNP 24.6914
466 3M1I GTP 24.6914
467 5UWR GNP 24.6914
468 5UWW GNP 24.6914
469 5UWH GNP 24.6914
470 5UWS GNP 24.6914
471 5DHF GNP 24.6914
472 5UWJ GNP 24.6914
473 5UWO GNP 24.6914
474 5UWT GNP 24.6914
475 3GJ0 GDP 24.6914
476 5BXQ GDP 24.6914
477 4D0N GDP 24.6914
478 2GCN GDP 24.6914
479 1CXZ GSP 24.6914
480 5HPY GDP 24.6914
481 1OW3 GDP 24.6914
482 1TX4 ALF GDP 24.6914
483 5IRC GDP 24.6914
484 1IBR GNP 24.6914
485 5DI9 GNP 24.6914
486 3GJ8 GDP 25.3086
487 3GJ7 GDP 25.3086
488 3GJ4 GDP 25.3086
489 3GJ5 GDP 25.3086
490 1K6M AGS 25.9259
491 1NRJ GTP 26.6055
492 1B7T ADP 26.9231
493 1KAO GDP 26.9461
494 1TAD GDP 27.1605
495 1TAD ALF 27.1605
496 3Q72 GNP 27.1605
497 1KK8 BEF ADP 27.2727
498 1GOT GDP 27.7778
499 1GOJ ADP 27.7778
500 1RYH GNP 28.3951
501 4H1V GNP 28.3951
502 1GUA GNP 29.0123
503 4HDO GNP 29.0123
504 2FJU GSP 29.0123
505 1HE1 GDP 29.0123
506 1FQK GDP 29.6296
507 3T5G GDP 29.6296
508 4DCT GDP 29.6296
509 3SBD GNP 29.6296
510 1FQJ GDP 29.6296
511 6BSX GDP 29.6296
512 6BSX E7S 29.6296
513 6CRK GDP 30.2469
514 2OM2 GDP 30.2469
515 1Y3A GDP 30.2469
516 1BH2 GSP 30.2469
517 5KDO GDP 30.2469
518 1GP2 GDP 30.2469
519 1U8Z GDP 30.2469
520 5OCG GNP 30.2469
521 2ODE ALF GDP 30.8642
522 2WKQ GTP 30.8642
523 1I4D GDP 30.8642
524 1SVK ALF GDP 30.8642
525 2WJG GDP 31.4815
526 2WJH GDP 31.4815
527 1KMQ GNP 31.4815
528 2WJH FLC 31.4815
529 5Z2M GTP 32.0988
530 2GCO GNP 32.0988
531 1Z0F GDP 32.716
532 2D7C GTP 32.716
533 3RWO GDP 32.716
534 1VG9 GDP 32.716
535 1VG1 GDP 32.716
536 1VG0 GDP 32.716
537 2XTN GTP 32.716
538 1VG8 GNP 32.716
539 3T12 GDP ALF 33.3333
540 3T1O GDP 33.3333
541 2HV8 GTP 33.3333
542 1OIX GDP 33.3333
543 2A5J GDP 33.3333
544 1Z0K GTP 33.3333
545 1S8F GDP 33.3333
546 1E96 GTP 33.3333
547 2FFQ GSP 33.9506
548 4C4P GNP 33.9506
549 1WA5 GTP 33.9506
550 2BME GNP 33.9506
551 2F9L GDP 33.9506
552 1OIV GDP 33.9506
553 1YZQ GNP 33.9506
554 2QZ4 ADP 33.9506
555 2HT6 GDP 34.5679
556 2CJW GDP 34.5679
557 1Z2A GDP 34.5679
558 5CK5 GDP 34.5679
559 1G16 GDP 34.5679
560 1Z08 GNP 35.1852
561 3CX8 GSP 35.8025
562 3AB3 GDP 35.8025
563 1EK0 GNP 35.8025
564 3MJH GTP 36.4198
565 1ZC3 GNP 36.4198
566 5UPK GNP 36.4198
567 1NF3 GNP 36.4198
568 3BC1 GNP 37.037
569 2A9K GDP 37.037
570 1Z0J GTP 37.037
571 1TU3 GNP 37.037
572 1A4R GDP 37.037
573 1A4R GNH 37.037
574 2NGR GDP 37.037
575 4DID GDP 37.037
576 1GRN GDP 37.037
577 4ITR GDP 37.037
578 5HR5 ADP 37.037
579 1R2Q GNP 37.037
580 1YVD GNP 37.6543
581 1KY3 GDP 37.6543
582 1YZN GNP 38.2716
583 2BCG GDP 38.2716
584 3RAB GNP 38.8889
585 5O74 GDP 38.8889
586 3QBT GNP 39.5062
587 2FH5 GTP 39.5062
588 2G77 GDP 40.7407
589 1Z06 GNP 40.7407
590 5XC5 GTP 40.7407
591 1D5C GDP 42.5926
592 1Z0A GDP 42.5926
593 2QTV GNP 47.5309
594 1M2O GNP 47.5309
595 1F6B GDP 49.3827
Pocket No.: 2; Query (leader) PDB : 3N5C; Ligand: GDP; Similar sites found with APoc: 13
This union binding pocket(no: 2) in the query (biounit: 3n5c.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1WS5 MMA None
2 1QHG ATP 4.32099
3 4KVX ACO 4.48718
4 1RJW ETF 4.93827
5 1JG3 ADN 4.93827
6 1ME8 RVP 5.55556
7 1V59 FAD 6.17284
8 3FSY SCA 6.17284
9 1YXM ADE 8.02469
10 1ZEI CRS 11.3208
11 1DCP HBI 11.5385
12 4WZ8 3W7 14.1975
13 1LOJ U 21.8391
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