Receptor
PDB id Resolution Class Description Source Keywords
3N26 2.1 Å NON-ENZYME: TRANSPORT CPN0482 : THE ARGININE BINDING PROTEIN FROM THE PERIPLASM OF PNEUMONIAE CHLAMYDOPHILA PNEUMONIAE VACCINE DEVELOPMENT ALPHA AND BETA PROTEIN (A/B) STRUCTURAGENOMICS BACABS - EU FP6 PROGRAMME MARSEILLES STRUCTURAL PROGRAM @ AFMB MSGP TRANSPORT PROTEIN
Ref.: EXPLOITING ANTIGENIC DIVERSITY FOR VACCINE DESIGN: CHLAMYDIA ARTJ PARADIGM. J.BIOL.CHEM. 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ARG A:500;
Valid;
none;
submit data
175.209 C6 H15 N4 O2 C(C[C...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N26 2.1 Å NON-ENZYME: TRANSPORT CPN0482 : THE ARGININE BINDING PROTEIN FROM THE PERIPLASM OF PNEUMONIAE CHLAMYDOPHILA PNEUMONIAE VACCINE DEVELOPMENT ALPHA AND BETA PROTEIN (A/B) STRUCTURAGENOMICS BACABS - EU FP6 PROGRAMME MARSEILLES STRUCTURAL PROGRAM @ AFMB MSGP TRANSPORT PROTEIN
Ref.: EXPLOITING ANTIGENIC DIVERSITY FOR VACCINE DESIGN: CHLAMYDIA ARTJ PARADIGM. J.BIOL.CHEM. 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 175 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ARG; Similar ligands found: 42
No: Ligand ECFP6 Tc MDL keys Tc
1 ARG 1 1
2 DAR 1 1
3 CIR 0.735294 0.763158
4 AAR 0.705882 0.783784
5 ILO 0.615385 0.783784
6 3AR 0.595238 0.891892
7 4JK 0.585366 0.789474
8 NMM 0.585366 0.888889
9 VUR 0.585366 0.810811
10 HAR 0.585366 0.780488
11 VIO 0.581395 0.769231
12 WT2 0.571429 0.805556
13 DA2 0.55814 0.744186
14 2MR 0.545455 0.864865
15 2YH 0.545455 0.65
16 3KJ 0.545455 0.680851
17 1KJ 0.533333 0.744186
18 JM2 0.533333 0.731707
19 NRG 0.521739 0.622642
20 RPI 0.521739 0.64
21 2YJ 0.521739 0.619048
22 API 0.515152 0.611111
23 LN6 0.510638 0.725
24 HRG 0.5 0.941176
25 JM7 0.5 0.731707
26 2KJ 0.489796 0.727273
27 D20 0.489796 0.744186
28 AS1 0.489796 0.8
29 ORN 0.472222 0.757576
30 JM8 0.470588 0.714286
31 JM6 0.470588 0.697674
32 JM4 0.470588 0.697674
33 LYS ARG LYS ARG LYS ARG LYS ARG 0.463415 0.848485
34 MLZ 0.463415 0.65
35 JM5 0.461538 0.714286
36 DLY 0.447368 0.735294
37 DAB 0.441176 0.685714
38 LYS 0.435897 0.764706
39 0TF 0.428571 0.619048
40 2YG 0.42 0.619048
41 PG3 0.416667 0.756757
42 6CL 0.414634 0.638889
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N26; Ligand: ARG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3n26.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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