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Receptor
PDB id Resolution Class Description Source Keywords
3N26 2.1 Å NON-ENZYME: TRANSPORT CPN0482 : THE ARGININE BINDING PROTEIN FROM THE PERIPLASM OF PNEUMONIAE CHLAMYDOPHILA PNEUMONIAE VACCINE DEVELOPMENT ALPHA AND BETA PROTEIN (A/B) STRUCTURAGENOMICS BACABS - EU FP6 PROGRAMME MARSEILLES STRUCTURAL PROGRAM @ AFMB MSGP TRANSPORT PROTEIN
Ref.: EXPLOITING ANTIGENIC DIVERSITY FOR VACCINE DESIGN: CHLAMYDIA ARTJ PARADIGM. J.BIOL.CHEM. 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ARG A:500;
Valid;
none;
submit data
175.209 C6 H15 N4 O2 C(C[C...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3N26 2.1 Å NON-ENZYME: TRANSPORT CPN0482 : THE ARGININE BINDING PROTEIN FROM THE PERIPLASM OF PNEUMONIAE CHLAMYDOPHILA PNEUMONIAE VACCINE DEVELOPMENT ALPHA AND BETA PROTEIN (A/B) STRUCTURAGENOMICS BACABS - EU FP6 PROGRAMME MARSEILLES STRUCTURAL PROGRAM @ AFMB MSGP TRANSPORT PROTEIN
Ref.: EXPLOITING ANTIGENIC DIVERSITY FOR VACCINE DESIGN: CHLAMYDIA ARTJ PARADIGM. J.BIOL.CHEM. 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 175 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 3N26 - ARG C6 H15 N4 O2 C(C[C@@H](....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ARG; Similar ligands found: 42
No: Ligand ECFP6 Tc MDL keys Tc
1 ARG 1 1
2 DAR 1 1
3 CIR 0.735294 0.763158
4 AAR 0.705882 0.783784
5 ILO 0.615385 0.783784
6 3AR 0.595238 0.891892
7 4JK 0.585366 0.789474
8 NMM 0.585366 0.888889
9 VUR 0.585366 0.810811
10 HAR 0.585366 0.780488
11 VIO 0.581395 0.769231
12 WT2 0.571429 0.805556
13 DA2 0.55814 0.744186
14 2MR 0.545455 0.864865
15 2YH 0.545455 0.65
16 3KJ 0.545455 0.680851
17 1KJ 0.533333 0.744186
18 JM2 0.533333 0.731707
19 NRG 0.521739 0.622642
20 RPI 0.521739 0.64
21 2YJ 0.521739 0.619048
22 API 0.515152 0.611111
23 LN6 0.510638 0.725
24 HRG 0.5 0.941176
25 JM7 0.5 0.731707
26 2KJ 0.489796 0.727273
27 D20 0.489796 0.744186
28 AS1 0.489796 0.8
29 ORN 0.472222 0.757576
30 JM8 0.470588 0.714286
31 JM6 0.470588 0.697674
32 JM4 0.470588 0.697674
33 LYS ARG LYS ARG LYS ARG LYS ARG 0.463415 0.848485
34 MLZ 0.463415 0.65
35 JM5 0.461538 0.714286
36 DLY 0.447368 0.735294
37 DAB 0.441176 0.685714
38 LYS 0.435897 0.764706
39 0TF 0.428571 0.619048
40 2YG 0.42 0.619048
41 PG3 0.416667 0.756757
42 6CL 0.414634 0.638889
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3N26; Ligand: ARG; Similar sites found with APoc: 91
This union binding pocket(no: 1) in the query (biounit: 3n26.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 1NZY BCA None
2 1JXZ BCA None
3 2O4N TPV None
4 5B4T NAD 1.21951
5 5B4T 3HR 1.21951
6 2HSA FMN 2.03252
7 3EWP APR 2.25989
8 5H5O PCG 2.32558
9 5KMS NAD 2.43902
10 5KMS FAD 2.43902
11 1UWK NAD 2.43902
12 1UWK URO 2.43902
13 1EJH M7G 2.63158
14 4RW3 DKA 2.84553
15 3FSY SCA 2.84553
16 3S5W ONH 2.84553
17 4R38 RBF 2.85714
18 4HK8 XYP XYP XYP XYP XYP XYP 3.1746
19 2E2R 2OH 3.27869
20 1QMG DMV 3.65854
21 5EHS 5OY 4.06504
22 5EHS 2JJ 4.06504
23 4OOE FOM 4.06504
24 6G5Q EMZ 4.26065
25 4ITU 1HS 4.46097
26 4F2Q QUS 4.47154
27 4XDY HIO 4.47154
28 5NA1 FAD 4.47154
29 3FPZ AHZ 4.47154
30 3P7N FMN 4.47154
31 4ZU3 4SD 4.84582
32 3F7Z 34O 4.87805
33 1D6Z HY1 4.87805
34 4OTH DRN 4.87805
35 5K8P 6R8 4.87805
36 4ZDM GLY 5.28455
37 5VZ0 ADP 5.28455
38 2Z48 A2G 5.28455
39 1EU1 MGD 5.28455
40 1KZL CRM 5.28846
41 3AJ4 SEP 5.35714
42 4NTD FAD 5.69106
43 4WXJ GLU 5.69106
44 4CL6 7SB 5.84795
45 5TCI 79V 6.09756
46 4YKI GLY 6.50407
47 5BWD FUM 6.50407
48 4KQW NAP 6.50407
49 3E3U NVC 6.59898
50 4LO2 GAL BGC 6.80272
51 5H4S RAM 7.72358
52 5E4R 40E 8.53659
53 4XDZ 40E 8.53659
54 2OFW ADX 8.65385
55 5AHO TLA 8.94309
56 1RZM E4P 9.34959
57 2FAH MLA 9.7561
58 2NXW TPP 9.7561
59 1IDA 0PO 11.1111
60 6G1O GLV 11.7886
61 3GCM 5GP 12.1951
62 2E7Z MGD 13.4146
63 1II5 GLU 13.7339
64 1OFD AKG 14.2276
65 1OFD FMN 14.2276
66 4JWX 1N4 15.0407
67 3ZNR NU9 15.0407
68 5DEX GLY 15.8537
69 1PBQ DK1 15.8537
70 5CC2 CKA 15.8537
71 5AA4 6X4 16.6667
72 5O4F 8VE 17.4797
73 3O5N BR0 17.8571
74 6FC1 MGP 21.875
75 5NC1 NAG 23.5772
76 1M5B BN1 23.9837
77 3OEN GLU 23.9837
78 5IKB KAI 26.0163
79 5CMK GLU 34.9594
80 3FV1 DYH 35.3659
81 2RCA GLY 35.3659
82 2RC8 DSN 36.9919
83 5DT6 GLU 37.8277
84 4IO2 GLU 39.0244
85 6H1U ASP 41.0569
86 5ORG 6DB 42.2764
87 4KQP GLN 42.6724
88 2PYY GLU 42.9825
89 1WDN GLN 43.3628
90 4C0R GDS 43.9024
91 4POW OP1 47.561
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