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Receptor
PDB id Resolution Class Description Source Keywords
3MDE 2.4 Å EC: 1.3.99.3 CRYSTAL STRUCTURES OF MEDIUM CHAIN ACYL-COA DEHYDROGENASE FR LIVER MITOCHONDRIA WITH AND WITHOUT SUBSTRATE SUS SCROFA OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURES OF MEDIUM-CHAIN ACYL-COA DEHYDRO FROM PIG LIVER MITOCHONDRIA WITH AND WITHOUT SUBSTR PROC.NATL.ACAD.SCI.USA V. 90 7523 1993
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CO8 A:400;
B:400;
Valid;
Valid;
none;
none;
submit data
893.73 C29 H50 N7 O17 P3 S CCCCC...
FAD A:399;
B:399;
Valid;
Valid;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UDY 2.4 Å EC: 1.3.99.3 MEDIUM-CHAIN ACYL-COA DEHYDROGENASE WITH 3-THIAOCTANOYL-COA SUS SCROFA MCAD COMPLEX OXIDOREDUCTASE
Ref.: STRUCTURE OF THE TRANSITION STATE ANALOG OF MEDIUM-CHAIN ACYL-COA DEHYDROGENASE. CRYSTALLOGRAPHIC AND MOLECULAR ORBITAL STUDIES ON THE CHARGE-TRANSFER COMPLEX OF MEDIUM-CHAIN ACYL-COA DEHYDROGENASE WITH 3-THIAOCTANOYL-COA J.BIOCHEM.(TOKYO)
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1UDY - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3MDE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 3MDD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1UDY - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3MDE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 3MDD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 1EGD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (22)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1UDY - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3MDE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 3MDD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 4L1F - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
5 2R0N - TGC C25 H40 N7 O19 P3 S2 CC(C)(CO[P....
6 1SIQ - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
7 5AHS - COA C21 H36 N7 O16 P3 S CC(C)(CO[P....
8 5AF7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
9 1EGD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
10 3PFD - FDA C27 H35 N9 O15 P2 Cc1cc2c(cc....
11 3GQT - UFO C11 H17 N3 CN1CCN(c2c....
12 3GNC - QQQ C10 H12 N2 O3 S CC(C)n1c2c....
13 1JQI - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
14 1BUC - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
15 6AF6 - PRO GLY n/a n/a
16 5ZW2 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
17 5ZW7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
18 5ZW8 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
19 1UKW - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
20 3MPJ - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
21 3MPI - GRA C26 H42 N7 O19 P3 S CC(C)(CO[P....
22 1RX0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CO8; Similar ligands found: 137
No: Ligand ECFP6 Tc MDL keys Tc
1 CO8 1 1
2 5F9 0.992126 1
3 ST9 0.992126 1
4 UCC 0.992126 1
5 MFK 0.992126 1
6 DCC 0.992126 1
7 MYA 0.992126 1
8 HXC 0.953125 1
9 BCO 0.884615 0.977528
10 YNC 0.869565 0.945055
11 HDC 0.868613 1
12 GRA 0.865672 0.955556
13 1HE 0.856061 0.956044
14 1VU 0.854962 0.988764
15 SCA 0.843284 0.955556
16 IVC 0.842105 0.966292
17 3HC 0.842105 0.966292
18 CS8 0.834532 0.988889
19 MLC 0.828358 0.955556
20 ACO 0.824427 0.988764
21 HGG 0.823529 0.955556
22 MRS 0.822695 1
23 MRR 0.822695 1
24 CAA 0.822222 0.966292
25 UOQ 0.815603 0.977778
26 NHM 0.815603 0.977778
27 NHW 0.815603 0.977778
28 0ET 0.814286 0.977778
29 3KK 0.81203 0.977528
30 8Z2 0.811189 0.988889
31 COS 0.80916 0.934066
32 CAO 0.80916 0.923913
33 OXK 0.80597 0.955556
34 FAQ 0.804348 0.955556
35 0T1 0.8 0.955056
36 CO6 0.8 0.977528
37 2MC 0.794118 0.935484
38 TGC 0.792857 0.945055
39 FYN 0.785185 0.955056
40 DCA 0.784615 0.955056
41 COO 0.782609 0.955556
42 MCA 0.782609 0.966667
43 COK 0.779412 0.934066
44 SOP 0.779412 0.955556
45 MC4 0.776978 0.925532
46 CMC 0.773723 0.934066
47 COA 0.772727 0.955056
48 1GZ 0.771429 0.945055
49 BYC 0.771429 0.955556
50 IRC 0.771429 0.966292
51 COW 0.771429 0.945055
52 30N 0.768657 0.876289
53 AMX 0.768657 0.94382
54 CAJ 0.768116 0.955556
55 BCA 0.765957 0.945055
56 COA PLM 0.763889 0.966667
57 PLM COA 0.763889 0.966667
58 CMX 0.762963 0.933333
59 A1S 0.76259 0.955556
60 2NE 0.762238 0.934783
61 3CP 0.758865 0.934066
62 COF 0.758865 0.913979
63 ETB 0.757576 0.922222
64 HAX 0.751825 0.913043
65 2CP 0.751773 0.945055
66 SCO 0.75 0.933333
67 1CZ 0.75 0.945055
68 NMX 0.748201 0.865979
69 2KQ 0.746479 0.977778
70 FCX 0.744526 0.903226
71 FAM 0.744526 0.913043
72 SCD 0.742857 0.933333
73 4CA 0.741259 0.923913
74 CA6 0.741007 0.887755
75 MCD 0.741007 0.955556
76 WCA 0.734694 0.934783
77 4KX 0.72973 0.924731
78 CCQ 0.726027 0.935484
79 CIC 0.726027 0.934066
80 0FQ 0.721088 0.934066
81 4CO 0.721088 0.923913
82 DAK 0.72 0.924731
83 01A 0.716216 0.894737
84 HFQ 0.713333 0.913979
85 1CV 0.711409 0.955556
86 CA8 0.710345 0.868687
87 YE1 0.708333 0.923077
88 1HA 0.707792 0.934783
89 UCA 0.70625 0.977778
90 NHQ 0.705882 0.944444
91 S0N 0.702703 0.913043
92 01K 0.692308 0.955556
93 7L1 0.687943 0.988764
94 F8G 0.687898 0.93617
95 CA3 0.679245 0.934066
96 COT 0.677215 0.934066
97 CA5 0.668712 0.894737
98 CO7 0.662162 0.955556
99 93P 0.654545 0.923913
100 93M 0.64497 0.923913
101 COD 0.628571 0.94382
102 HMG 0.605096 0.923077
103 5TW 0.6 0.93617
104 4BN 0.6 0.93617
105 JBT 0.592391 0.916667
106 OXT 0.588889 0.93617
107 BSJ 0.551913 0.904255
108 ASP ASP ASP ILE CMC NH2 0.534091 0.913043
109 191 0.52795 0.887755
110 PAP 0.51938 0.775281
111 RFC 0.5 0.956044
112 SFC 0.5 0.956044
113 PPS 0.485075 0.721649
114 ACE SER ASP ALY THR NH2 COA 0.484375 0.913043
115 A3P 0.472868 0.764045
116 0WD 0.470968 0.755319
117 1ZZ 0.461538 0.866667
118 OMR 0.444444 0.877778
119 S2N 0.43662 0.688889
120 PTJ 0.431507 0.833333
121 MDE 0.421875 0.978022
122 PUA 0.420732 0.784946
123 A22 0.41958 0.777778
124 MYR AMP 0.418919 0.846154
125 NA7 0.417808 0.820225
126 3AM 0.415385 0.752809
127 YLB 0.414013 0.888889
128 PAJ 0.413793 0.844444
129 ATR 0.410072 0.764045
130 5SV 0.406897 0.853933
131 WAQ 0.405405 0.822222
132 YLP 0.403846 0.888889
133 A2D 0.402985 0.766667
134 A2R 0.402778 0.777778
135 3OD 0.402685 0.788889
136 SAP 0.4 0.791209
137 AGS 0.4 0.791209
Ligand no: 2; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UDY; Ligand: CS8; Similar sites found with APoc: 27
This union binding pocket(no: 1) in the query (biounit: 1udy.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1RV1 IMZ None
2 1MID LAP None
3 6CGN DA 1.51515
4 5CX6 CDP 2.0202
5 1R6N 434 2.36967
6 5W7B MYR 3.5461
7 2UW1 GVM 3.5503
8 2BCG GER 3.8835
9 6BR8 PGV 3.96825
10 3N7S 3N7 4.34783
11 4WGF HX2 4.39024
12 4DDY DN6 4.94297
13 1ZED PNP 5.30303
14 4F4S EFO 6.57895
15 3CHT 4NB 9.52381
16 4RJD TFP 10.6061
17 5LX9 OLB 10.7492
18 5LWY OLB 11.3014
19 4TR1 GSH 13.0435
20 5Z84 CHD 25
21 5ZCO CHD 25
22 4Y9J UCC 31.8182
23 2C0U FAD NBT 42.6768
24 3D9F N6C 44.4444
25 3D9F FAD 44.4444
26 3B96 MYA 44.697
27 1R2J FAD 46.7213
Pocket No.: 2; Query (leader) PDB : 1UDY; Ligand: FAD; Similar sites found with APoc: 34
This union binding pocket(no: 2) in the query (biounit: 1udy.bio1) has 68 residues
No: Leader PDB Ligand Sequence Similarity
1 3SZB I1E 1.51515
2 1NSA BEN 2.27848
3 5C3R HMU 2.33236
4 5C3R AKG 2.33236
5 3ITJ CIT 2.36686
6 4L8F MTX 2.5641
7 2D4V FLC 2.77778
8 1KGZ PRP 2.89855
9 1XKD ICT 3.53535
10 1OYJ GSH 3.8961
11 1GPM AMP 4.0404
12 5MR6 FAD 4.0404
13 2GJP MAL 5.55556
14 3UU7 2OH 5.9761
15 4UZI IMD 8.83838
16 1U8V FAD 14.6465
17 2DDH HXD 15.1515
18 2DDH FAD 15.1515
19 5Y9D FAD 19.9495
20 5YS9 FAD 20.4545
21 3DJL FAD 30.0505
22 4XVX P6G FDA 31.3131
23 4XVX P33 FDA 31.3131
24 4Y9J FAD 31.8182
25 4Y9J UCC 31.8182
26 4KCF FMN 36.3636
27 2C0U FAD NBT 42.6768
28 4X28 FDA 42.9293
29 3D9F N6C 44.4444
30 3D9F FAD 44.4444
31 3B96 MYA 44.697
32 3B96 FAD 44.697
33 3MKH FAD 44.9495
34 1R2J FAD 46.7213
Pocket No.: 3; Query (leader) PDB : 1UDY; Ligand: CS8; Similar sites found with APoc: 83
This union binding pocket(no: 3) in the query (biounit: 1udy.bio1) has 57 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV None
2 2RKN LP3 None
3 2G9Z VNP 1.72414
4 1I7L ATP 1.94175
5 2BP1 FLC 1.94444
6 5FD0 NAG 2.0202
7 5UC9 MYR 2.21239
8 4RF7 ARG 2.27273
9 1WUU GLA 2.27273
10 5C3R HMU 2.33236
11 5C3R AKG 2.33236
12 4DS8 A8S 2.33236
13 3IP8 B85 2.41935
14 2VAT COA 2.52525
15 6CS8 F9Y 2.64026
16 4LWP SAH 2.71739
17 4V3I ASP LEU THR ARG PRO 2.72374
18 2D4V FLC 2.77778
19 3HYW DCQ 2.77778
20 3OEN GLU 2.7972
21 1KGZ PRP 2.89855
22 2VWA PTY 2.9703
23 1PCA CIT 3.0303
24 1ZPD CIT 3.0303
25 5UC1 486 3.15315
26 4G05 JZ3 3.15457
27 5Z20 OXM 3.18841
28 5UGW GSH 3.42857
29 2IV3 UDP 3.50877
30 3TDC 0EU 3.53535
31 4YRI 4JH 3.53535
32 4P6W MOF 3.57143
33 4OIC A8S 3.86473
34 6BR8 6OU 3.96825
35 3GFS FMN 4.02299
36 5MR6 FAD 4.0404
37 1GPM AMP 4.0404
38 1VR0 3SL 4.04858
39 5IUY BOG 4.29293
40 5X80 SAL 4.375
41 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 4.54545
42 5C1M CLR 4.8
43 2WOR 2AN 5
44 5N9X THR 5.05051
45 2O1V ADP 5.05051
46 3ETG GTP 5.30303
47 3RY9 1CA 5.6
48 4MGA 27L 5.88235
49 4TV1 36M 5.9761
50 1LRI CLR 6.12245
51 2AIB ERG 6.12245
52 3O01 DXC 6.81818
53 3KO0 TFP 6.93069
54 1V0O INR 6.94444
55 3RHC GSH 7.07965
56 1DTL BEP 7.45342
57 5XJ7 87O 7.46269
58 3NMV PYV 7.71605
59 5C9J STE 8.08081
60 1TL2 NDG 8.8983
61 1NU4 MLA 10.3093
62 2FLI DX5 11.3636
63 1OW4 2AN 11.6279
64 4DS0 A2G GAL NAG FUC 11.6564
65 2AGC DAO 11.7284
66 5OCA 9QZ 13.4921
67 1U8V FAD 14.6465
68 2DDH HXD 15.1515
69 2DDH FAD 15.1515
70 3KJQ B94 15.7895
71 2Y69 CHD 17.5
72 5Y9D FAD 19.9495
73 5YS9 FAD 20.4545
74 5W97 CHD 25
75 3DJL FAD 30.0505
76 4XVX P6G FDA 31.3131
77 4XVX P33 FDA 31.3131
78 4Y9J FAD 31.8182
79 3X0Y FMN 34.2926
80 4KCF FMN 36.3636
81 4X28 FDA 42.9293
82 3B96 FAD 44.697
83 3MKH FAD 44.9495
Pocket No.: 4; Query (leader) PDB : 1UDY; Ligand: FAD; Similar sites found with APoc: 60
This union binding pocket(no: 4) in the query (biounit: 1udy.bio1) has 57 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV None
2 1RV1 IMZ None
3 2G9Z VNP 1.72414
4 2JC9 ADN 1.76768
5 1I7L ATP 1.94175
6 2BP1 FLC 1.94444
7 5CX6 CDP 2.0202
8 4RF7 ARG 2.27273
9 1WUU GLA 2.27273
10 1R6N 434 2.36967
11 3IP8 B85 2.41935
12 2VAT COA 2.52525
13 6CS8 F9Y 2.64026
14 4V3I ASP LEU THR ARG PRO 2.72374
15 3HYW DCQ 2.77778
16 2VWA PTY 2.9703
17 1ZPD CIT 3.0303
18 5UC1 486 3.15315
19 5Z20 OXM 3.18841
20 1HSL HIS 3.36134
21 5UGW GSH 3.42857
22 4YRI 4JH 3.53535
23 5W7B MYR 3.5461
24 2BCG GER 3.8835
25 6BR8 6OU 3.96825
26 3GFS FMN 4.02299
27 3N7S 3N7 4.34783
28 5X80 SAL 4.375
29 3TL1 JRO 4.40252
30 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 4.54545
31 5EY0 GTP 4.74453
32 5C1M CLR 4.8
33 4DDY DN6 4.94297
34 5N9X THR 5.05051
35 1ZED PNP 5.30303
36 3ETG GTP 5.30303
37 3RY9 1CA 5.6
38 4MGA 27L 5.88235
39 4TV1 36M 5.9761
40 2AIB ERG 6.12245
41 4F4S EFO 6.57895
42 3O01 DXC 6.81818
43 3KO0 TFP 6.93069
44 1V0O INR 6.94444
45 3RHC GSH 7.07965
46 1KCE CB3 7.19697
47 3GUZ PAF 7.38636
48 5XJ7 87O 7.46269
49 5C9J STE 8.08081
50 1NU4 MLA 10.3093
51 4RJD TFP 10.6061
52 5LX9 OLB 10.7492
53 5LWY OLB 11.3014
54 2FLI DX5 11.3636
55 2AGC DAO 11.7284
56 2Y69 CHD 17.5
57 5Z84 CHD 25
58 5ZCO CHD 25
59 5W97 CHD 25
60 3X0Y FMN 34.2926
Pocket No.: 5; Query (leader) PDB : 1UDY; Ligand: FAD; Similar sites found with APoc: 31
This union binding pocket(no: 5) in the query (biounit: 1udy.bio1) has 57 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 3OJI PYV 1.5873
3 3HKW IX6 2.27273
4 4DS8 A8S 2.33236
5 6CB2 OLC 2.38908
6 5GG9 8GM 2.63158
7 4MS4 2C0 2.77778
8 4XJ6 GH3 2.77778
9 3BRE C2E 2.7933
10 2HPL ASP ASP LEU TYR GLY 3
11 2RIF AMP 3.5461
12 2OZ5 7XY 3.71622
13 4OIC A8S 3.86473
14 4URN NOV 4
15 6DIO CIT 4.0404
16 5IDB MAN 4.22535
17 5IDB BMA 4.22535
18 5C1M OLC 4.8
19 4RW3 TDA 4.96689
20 6DZN AE3 5.16432
21 2PYY GLU 5.70175
22 5HYR EST 5.81395
23 4TUZ 36J 5.88235
24 4MG7 27H 5.88235
25 4IBF 1D5 6.97674
26 2BHW NEX 7.32759
27 3NMV PYV 7.71605
28 3VV5 SLZ 8.46154
29 5N26 CPT 14.2857
30 2HJ9 AI2 16.7421
31 4V1F BQ1 32.5581
Pocket No.: 6; Query (leader) PDB : 1UDY; Ligand: FAD; Similar sites found with APoc: 3
This union binding pocket(no: 6) in the query (biounit: 1udy.bio1) has 67 residues
No: Leader PDB Ligand Sequence Similarity
1 3C3D FO1 2.2508
2 4JCA CIT 4.79042
3 6MFL OPV 5.51948
Pocket No.: 7; Query (leader) PDB : 1UDY; Ligand: CS8; Similar sites found with APoc: 4
This union binding pocket(no: 7) in the query (biounit: 1udy.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 4PQG NAG 1.26263
2 5KAU RHQ 2.42424
3 1J78 OLA 2.52525
4 4D52 GIV 8.88889
Pocket No.: 8; Query (leader) PDB : 1UDY; Ligand: CS8; Similar sites found with APoc: 39
This union binding pocket(no: 8) in the query (biounit: 1udy.bio1) has 56 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 3OJI PYV 1.5873
3 5N0F 7K2 1.65746
4 2GWH PCI 2.01342
5 3HKW IX6 2.27273
6 1NSA BEN 2.27848
7 4KRG OPE 2.77778
8 4MS4 2C0 2.77778
9 4XJ6 GH3 2.77778
10 3BRE C2E 2.7933
11 5MBC FMN 2.83286
12 1HG4 LPP 3.22581
13 1YUC EPH 3.52941
14 2RIF AMP 3.5461
15 2OZ5 7XY 3.71622
16 4QO5 NAG 3.78788
17 4URN NOV 4
18 5IDB MAN 4.22535
19 5IDB BMA 4.22535
20 5N1X 8HH 4.23729
21 3VPD CIT 4.62633
22 5EY0 GTP 4.74453
23 5C1M OLC 4.8
24 4RW3 TDA 4.96689
25 4RW3 IPD 4.96689
26 4MZU COA 5.44872
27 2GJP MAL 5.55556
28 2PYY GLU 5.70175
29 5XNA SHV 5.7971
30 4MGB XDH 5.88235
31 4TUZ 36J 5.88235
32 1B74 DGN 6.29921
33 5V4R MGT 7.40741
34 1I0B PEL 7.53012
35 4EKQ NPO 8.55615
36 2GNK ATP 8.92857
37 5N26 CPT 14.2857
38 2YJD YJD 17.5
39 4V1F BQ1 32.5581
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