-->
Receptor
PDB id Resolution Class Description Source Keywords
3MD0 2.45 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF ARGININE/ORNITHINE TRANSPORT SYSTEM ATP MYCOBACTERIUM TUBERCULOSIS BOUND TO GDP (A RAS-LIKE GTPASE S UPERFAMILY PROTEIN) MYCOBACTERIUM TUBERCULOSIS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE RLIKE GTPASE ALLOSTERIC MODULATOR TUBERCULOSIS ATP-BINDINNUCLEOTIDE-BINDING SSGCID TRANSPORT PROTEIN
Ref.: CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-L GTPASES. J.STRUCT.FUNCT.GENOM. V. 16 91 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:335;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
UNX A:336;
A:337;
A:338;
A:339;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
n/a X *
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3MD0 2.45 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF ARGININE/ORNITHINE TRANSPORT SYSTEM ATP MYCOBACTERIUM TUBERCULOSIS BOUND TO GDP (A RAS-LIKE GTPASE S UPERFAMILY PROTEIN) MYCOBACTERIUM TUBERCULOSIS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE RLIKE GTPASE ALLOSTERIC MODULATOR TUBERCULOSIS ATP-BINDINNUCLEOTIDE-BINDING SSGCID TRANSPORT PROTEIN
Ref.: CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-L GTPASES. J.STRUCT.FUNCT.GENOM. V. 16 91 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3MD0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3MD0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3TK1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3MD0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4JYB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2QM7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 4JYC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 4LC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3TK1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3MD0; Ligand: GDP; Similar sites found with APoc: 699
This union binding pocket(no: 1) in the query (biounit: 3md0.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 2ZEJ GDP None
2 3WR7 COA None
3 2D7D ADP 1.40845
4 6B4K ANP 1.40845
5 2V2V V12 1.47601
6 2ZX2 RAM 1.53846
7 1H74 ADP 1.68919
8 1DAR GDP 1.69014
9 5IRN ADP 1.69014
10 4NCN GTP 1.69014
11 2ZFI ADP 1.69014
12 2IS6 ADP 1.69014
13 3FKQ ATP 1.69014
14 2FNA ADP 1.69014
15 2VOS ADP 1.69014
16 1P3D ANP 1.69014
17 4PX9 ADP 1.71233
18 1F9V ADP 1.72911
19 4TMZ GSP 1.73913
20 1T8U UAP SGN IDS SGN 1.83824
21 1T8U A3P 1.83824
22 5MEX SZZ 1.86335
23 5MEX PAP 1.86335
24 6AIC AMP 1.86916
25 2J0V GDP 1.88679
26 3NC9 TR3 1.91693
27 1RYH GNP 1.97044
28 1KK1 GNP 1.97183
29 2QTV GNP 1.97183
30 2Q2Y ADP 1.97183
31 2Q2Y MKR 1.97183
32 1ZCB GDP 1.97183
33 1QF5 GDP 1.97183
34 1QF5 RPL 1.97183
35 4I6G FAD 1.97183
36 5ND5 TPP 1.97183
37 2GCO GNP 1.99005
38 2GCN GDP 1.99005
39 2ZW5 COA 1.99336
40 2GWH A3P 2.01342
41 2XT3 ADP 2.03488
42 4GDX GLU 2.05128
43 4Y4V DAL 2.0649
44 3CX8 GSP 2.07101
45 1M2O GNP 2.10526
46 3SBD GNP 2.13904
47 1MH1 GNP 2.15054
48 5HPY GDP 2.16216
49 6BCA GSP 2.16216
50 1G4U GDP 2.17391
51 5CK5 GDP 2.21519
52 5ULP KB1 2.23881
53 4U5X GNP 2.24719
54 4J0Q GDP 2.25352
55 6AU6 GDP 2.25352
56 1CS4 GSP 2.25352
57 4D0N GDP 2.25352
58 2NCD ADP 2.25352
59 4LYA ATP 2.25352
60 1SVM ATP 2.25352
61 5I34 GDP 2.25352
62 3DZD ADP 2.25352
63 2ZJ5 ADP 2.25352
64 1W5T ADP 2.25352
65 1W5T ANP 2.25352
66 1WRA PC 2.27273
67 1YRB GDP 2.29008
68 1T5C ADP 2.29226
69 1RRC ADP 2.32558
70 2JJK R15 2.36686
71 5TIV A3P 2.37154
72 2ZE7 DST 2.37154
73 3KC1 2T6 2.37389
74 1J99 AND 2.38908
75 4WEI GLC GAL 2.52708
76 5ZXD ATP 2.53521
77 4ZG4 VO4 ADP 2.53521
78 1IWE IMP 2.53521
79 4ZKD GDP 2.53521
80 3FVQ ATP 2.53521
81 4IHQ ADP 2.53521
82 4YS0 ADP 2.53521
83 3V2U ATP 2.53521
84 2ZPA ADP 2.53521
85 3SXN COA 2.53521
86 2CXG GLC GLC 2.53521
87 5U32 GDP 2.54237
88 5GVR LMR 2.5641
89 3WGT FAD 2.59366
90 5NM7 GLY 2.63158
91 5H68 AGS 2.64706
92 1W7J ADP BEF 2.64901
93 1Q20 PLO 2.67559
94 1Q20 A3P 2.67559
95 1DAK ADP 2.67857
96 1DAK DPU 2.67857
97 1AQU A3P 2.6936
98 2WKQ GTP 2.71084
99 1NST A3P 2.76923
100 1NJF ADP 2.8
101 1NJF AGS 2.8
102 3E5H GNP 2.80899
103 1XMV ADP 2.80899
104 4R43 GDP 2.8169
105 3ZFD ANP 2.8169
106 1NHX FTB 2.8169
107 1NHX PEP 2.8169
108 2GMV UN8 2.8169
109 2GMV PEP 2.8169
110 4PJ3 ANP 2.8169
111 5MZN ADP 2.8169
112 1FNN ADP 2.8169
113 2I4I AMP 2.8169
114 1X8J A3P 2.849
115 3C3N FMN 2.88462
116 4YLG GDP 2.89017
117 1IN4 ADP 2.99401
118 4IXH IMP 3.04709
119 5KF9 ACO 3.04878
120 3QVV 3QV 3.05085
121 3QVV A3P 3.05085
122 5EXT ADP 3.07692
123 4NON GDP 3.07692
124 1G7S GDP 3.09859
125 1TQ4 GDP 3.09859
126 1WDT GTP 3.09859
127 1F5N GNP 3.09859
128 2DPY ADP 3.09859
129 1Z6T ADP 3.09859
130 2FSH ANP 3.09859
131 1K6M AGS 3.09859
132 2A2C NG1 3.09859
133 2A2C ADP 3.09859
134 3RC3 ANP 3.09859
135 3ZL8 ADP 3.09859
136 1OXV ANP 3.11615
137 3F8K COA 3.125
138 3MGB PAP 3.1348
139 3MJY IJZ 3.17919
140 3MJY FMN 3.17919
141 2ZTS ADP 3.18725
142 3BD9 A3P 3.21429
143 2W2X GSP 3.22581
144 5OEC GDP 3.27869
145 4ZNL BEF ADP 3.28467
146 1P72 ADP 3.29341
147 6BC0 GSP 3.33333
148 5CUQ NSC 3.37079
149 3BFX A3P 3.37838
150 1D2E GDP 3.38028
151 3VMF GTP 3.38028
152 5FG3 GDP 3.38028
153 5YT0 GDP 3.38028
154 3WXM GTP 3.38028
155 3LRE ADP 3.38028
156 6A20 ADP 3.38028
157 5AK0 8V1 3.38028
158 2BIF ANP 3.38028
159 2BIF SIN 3.38028
160 5LB3 ADP 3.38028
161 1XKV ATP 3.38028
162 5ZBR ANP 3.38028
163 2FAH GDP 3.38028
164 3TBK ANP 3.38028
165 2J5V PCA 3.38028
166 3UR0 SVR 3.38028
167 1VG0 GDP 3.38164
168 1VG8 GNP 3.38164
169 5X40 ACP 3.42466
170 1E96 GTP 3.44828
171 2JEV NHQ 3.44828
172 1JJ7 ADP 3.46154
173 1R0X ATP 3.4965
174 2B4D COA 3.50877
175 2B4B COA 3.50877
176 4D81 ADP 3.53357
177 1OJ4 ANP 3.53357
178 3QKT ANP 3.53982
179 1E2K TMC 3.62538
180 3AB3 GDP 3.65854
181 3WY9 GDP 3.66197
182 5M04 GDP 3.66197
183 1SKQ GDP 3.66197
184 3WYA GDP 3.66197
185 2AWN ADP 3.66197
186 2FJU GSP 3.66197
187 2WHX ADP 3.66197
188 5TSH ADP 3.66197
189 4HSE ADP 3.66197
190 5TSH ANP 3.66197
191 1V8K ANP 3.66197
192 1G41 ADP 3.66197
193 2JLR ANP 3.66197
194 4OHY ANP 3.66197
195 1G3M PCQ 3.66197
196 1G3M A3P 3.66197
197 3QF7 ANP 3.66197
198 2O0J ADP 3.66197
199 2NYA MGD 3.66197
200 5E5U MLI 3.66197
201 4NU0 AP5 3.68664
202 4R98 GNH 3.69004
203 5OCG GNP 3.7037
204 2VVG ADP 3.71429
205 1CR1 TTP 3.71622
206 3BOS CDP 3.71901
207 3DC4 ADP 3.77907
208 1VG1 GDP 3.78378
209 1VG9 GDP 3.78378
210 4WZ6 ATP 3.7931
211 2QZ4 ADP 3.81679
212 5BYK A3P 3.861
213 5BYK OAQ 3.861
214 2RGX AP5 3.8835
215 1SQ5 ADP 3.8961
216 5IRR GSP 3.8961
217 4D42 NAP 3.90071
218 4D42 W0I 3.90071
219 5EP2 AZU 3.90625
220 4P4T GDP 3.94366
221 5Z69 AGS 3.94366
222 6FAA ADP 3.94366
223 1GQY ACP 3.94366
224 1ITZ TPP 3.94366
225 1Y3A GDP 3.95137
226 2W58 ADP 3.9604
227 5G3Y ADP 3.9823
228 4PPF FLC 4
229 1D2N ANP 4.04412
230 4XOI GTP 4.07407
231 1EK0 GNP 4.11765
232 1R2Q GNP 4.11765
233 1QF9 C5P 4.12371
234 1QF9 ADP 4.12371
235 1QF9 ALF 4.12371
236 1BH2 GSP 4.12698
237 2VZZ SCA 4.12844
238 3LXR GDP 4.16667
239 5O3Q CMP 4.16667
240 2A5J GDP 4.18848
241 1DUB CAA 4.21456
242 4B47 GDP 4.22535
243 4KVA GTP 4.22535
244 5VHC BEF ADP 4.22535
245 1NY5 ADP 4.22535
246 2CE7 ADP 4.22535
247 4IEE AGS 4.22535
248 2Z5F A3P 4.22535
249 6H5E ANP 4.22535
250 4ONQ SFG 4.22535
251 3DOE GTP 4.24242
252 2VBQ BSJ 4.24242
253 1L2T ATP 4.25532
254 1G6H ADP 4.28016
255 1KHZ ADV 4.30622
256 2PZE ATP 4.36681
257 1ZRH A3P 4.37956
258 4YDS ATP 4.38596
259 3IUY AMP 4.38596
260 2JAQ DCP 4.39024
261 1S7N COA 4.3956
262 3BER AMP 4.41767
263 1FZQ GDP 4.41989
264 5G41 AP5 4.4843
265 1MKY GDP 4.50704
266 5Z2M GTP 4.50704
267 4YJ1 ADP 4.50704
268 4AF0 IMP 4.50704
269 3AB4 THR 4.50704
270 3L9W AMP 4.50704
271 3L9W GSH 4.50704
272 4QOS ADP 4.5283
273 2X7I CIT 4.54545
274 6G96 ACO 4.54545
275 1JI0 ATP 4.58333
276 1ZIN AP5 4.60829
277 4MKF AP5 4.60829
278 1PUJ GNP 4.60993
279 4UTG ANP 4.62428
280 3FB4 AP5 4.62963
281 2CBZ ATP 4.64135
282 3TE4 ACO 4.65116
283 5KSP GDP 4.73684
284 4ITM ATP 4.7619
285 5H67 ATP 4.78723
286 3R96 AMP 4.78723
287 3R96 ACO 4.78723
288 5W7Q GDP 4.78873
289 3P4X ADP 4.78873
290 4XGU ADP 4.78873
291 5I0H ADP BEF 4.78873
292 4A4Z ANP 4.78873
293 2BME GNP 4.83871
294 1JJV ATP 4.85437
295 2IL4 COA 4.85437
296 1I4D GDP 4.91071
297 1UKZ ADP 4.92611
298 3FYH ADP 4.96894
299 3EWA ANP 4.96894
300 4ZY1 4U5 4.98084
301 4XSH GSP 5.02283
302 2C78 GNP 5.07042
303 5W75 GDP 5.07042
304 2C77 GNP 5.07042
305 5W75 SUC 5.07042
306 5KSZ GCP 5.07042
307 5M7P ADP 5.07042
308 2GK6 ADP 5.07042
309 2OHH FMN 5.07042
310 3FWY ADP 5.09554
311 2VOH CIT 5.09554
312 1Z83 AP5 5.10204
313 1W0J ADP 5.14706
314 2CK3 ANP 5.14706
315 1W0J ADP BEF 5.14706
316 2CK3 ADP 5.14706
317 1Z0K GTP 5.23256
318 1KSH GDP 5.26316
319 1Z06 GNP 5.29101
320 4V0K GDP 5.32544
321 5TB5 GDP 5.33333
322 3H4S ADP 5.35211
323 4FRZ ADP 5.35211
324 4BFW ZVW 5.35211
325 4IDN GNP 5.35211
326 1U0J ADP 5.35211
327 5TVJ COA 5.35211
328 1Z2A GDP 5.35714
329 3MJH GTP 5.35714
330 1BO4 COA 5.35714
331 1GWN GTP 5.36585
332 3W5J GDP 5.39216
333 5TAR GDP 5.40541
334 5K5Z ANP 5.41401
335 1CJW COT 5.42169
336 3GJ8 GDP 5.42986
337 3GJ3 GDP 5.42986
338 3GJ4 GDP 5.42986
339 3GJ5 GDP 5.42986
340 3WYF GTP 5.47945
341 3M1I GTP 5.47945
342 5JCP GDP ALF 5.48926
343 2PL3 ADP 5.50847
344 3T5G GDP 5.52486
345 3IIJ ADP 5.55556
346 5MVR ADP 5.55556
347 3GJX GTP 5.55556
348 1Z0F GDP 5.58659
349 6BSX GDP 5.61798
350 6BSX E7S 5.61798
351 5W76 GDP 5.6338
352 3NHB ADP 5.6338
353 4H1V GNP 5.6338
354 5XDR ADP 5.6338
355 5Y6N ADP 5.6338
356 4M3P HCS 5.6338
357 4HUT ATP 5.6338
358 2IO8 ADP 5.6338
359 4DDY DN6 5.70342
360 4D0G GTP 5.71429
361 4R2I ANP 5.71429
362 2CJW GDP 5.72917
363 3QBT GNP 5.74713
364 4LHW GNP 5.74713
365 3TNF GNP 5.74713
366 1OFH ADP 5.74713
367 2HF9 GSP 5.75221
368 1OIV GDP 5.75916
369 4CVN ADP 5.75916
370 4ITR GDP 5.75916
371 4KVX ACO 5.76923
372 3KTA AP5 5.78035
373 3A1S GDP 5.81395
374 1XEX ATP 5.81395
375 5K04 COA 5.88235
376 4YMU ATP 5.90909
377 5GOE GDP 5.91549
378 5HR5 ADP 5.91549
379 5LTJ ADP 5.91549
380 1NRJ GTP 5.91549
381 4IOK XPO 5.91549
382 4IOK ADP 5.91549
383 2XAU ADP 5.91549
384 5LTJ BEF 5.91549
385 4ZDJ UTP 5.91549
386 1Q19 APC 5.91549
387 1Q19 SSC 5.91549
388 1HE1 GDP 5.92593
389 6CS8 F9Y 5.94059
390 1M7B GTP 5.97826
391 2PZ8 APC 5.98592
392 1KAO GDP 5.98802
393 4DKX GDP 6.01852
394 3IO3 ADP 6.03448
395 3T1O GDP 6.06061
396 4Q1A 2XZ 6.07143
397 4Q1A UDP 6.07143
398 4YC7 GNP 6.07735
399 4U00 ADP 6.14754
400 6BCB GSP 6.16438
401 1X1R GDP 6.17978
402 5H7J GCP 6.19718
403 1X6V ADP 6.19718
404 1YTM ATP 6.19718
405 1OS1 ATP 6.19718
406 1OS1 PYR 6.19718
407 4JLV ADP 6.19718
408 2ODE ALF GDP 6.19718
409 1SVK ALF GDP 6.19718
410 1OYY AGS 6.19718
411 2R42 FPS 6.19718
412 3QXC ATP 6.19835
413 4XVU ATP 6.21469
414 3ZS9 ADP ALF 6.21469
415 2WOJ ADP ALF 6.21469
416 1XX6 ADP 6.28272
417 5UWP GNP 6.29371
418 5UWU GNP 6.29371
419 6CIT GNP 6.29371
420 5UWQ GNP 6.29371
421 5UWW GNP 6.29371
422 5DHF GNP 6.29371
423 5UWO GNP 6.29371
424 5UWS GNP 6.29371
425 5UWH GNP 6.29371
426 5UWT GNP 6.29371
427 5DIF GNP 6.29371
428 5UWJ GNP 6.29371
429 5UWI GNP 6.29371
430 5UWR GNP 6.29371
431 5DI9 GNP 6.29371
432 1VKJ A3P 6.31579
433 1Z0A GDP 6.32184
434 5L3V GDP 6.35452
435 1ZJ6 G3D 6.41711
436 4HAT GNP 6.42857
437 5N69 ADP 6.47887
438 1IHU AF3 6.47887
439 1IHU ADP 6.47887
440 4LJ9 ACP 6.48968
441 3Q85 GNP 6.50888
442 1Y63 ADP 6.52174
443 4BAS GNP 6.53266
444 4DID GDP 6.57895
445 1KY3 GDP 6.59341
446 4M9Q GNP 6.60793
447 3T12 GDP ALF 6.61765
448 1H65 GDP 6.66667
449 5H4S RAM 6.69014
450 5KDO GDP 6.76056
451 3COB ADP 6.76056
452 4DPL NAP 6.76056
453 5LEF GTP 6.80628
454 1WA5 GTP 6.81818
455 5KUT GDP 6.87831
456 2WJG GDP 6.91489
457 1ZD9 GDP 6.91489
458 1T3D CYS 6.92042
459 3Q9L ATP 6.92308
460 1V0C KNC 6.93069
461 1V0C ACO 6.93069
462 2BEK ATP 7.00389
463 4X8O AP5 7.00935
464 5EE5 GTP 7.01754
465 1UPT GTP 7.01754
466 5DI3 GNP 7.02703
467 4GOX A3P 7.02875
468 2QG6 NMN 7.03518
469 1S9D GDP 7.04225
470 1RE0 GDP 7.04225
471 1D8T GDP 7.04225
472 5XKT GNP 7.04225
473 2BVN GNP 7.04225
474 1GOJ ADP 7.04225
475 2QQ0 TMP 7.06522
476 2QQ0 ADP 7.06522
477 2QQ0 THM 7.06522
478 2QQ0 ANP 7.06522
479 4UXH T5A 7.06522
480 4FCW ADP 7.07396
481 3ZQ6 ADP ALF 7.09877
482 1MR3 G3D 7.18232
483 5FVJ ACO 7.22892
484 1YZG GDP 7.26257
485 2Y8E GNP 7.26257
486 1R4A GNP 7.27273
487 1AKY AP5 7.27273
488 5HCN GCP 7.27969
489 1LVK MNT BEF 7.32394
490 4PFO ADP 7.32394
491 3EZ2 ADP 7.32394
492 1ME8 RVP 7.32394
493 3DDC GNP 7.36196
494 5J1J ANP 7.36842
495 5SZH GNP 7.38916
496 3B7G ANP 7.3913
497 2HCJ GDP 7.46269
498 1P9B GDP 7.46606
499 5WRI A3P 7.5
500 1F6B GDP 7.57576
501 2FFQ GSP 7.60234
502 4G5G GDP 7.60563
503 3U6B GDP 7.60563
504 4P3Y GDP 7.60563
505 5JBQ GDP 7.60563
506 3U6K GDP 7.60563
507 4PC3 GDP 7.60563
508 5L3W GDP 7.60563
509 5L3S GNP 7.60563
510 5L3S G 7.60563
511 1FP6 ADP 7.61246
512 2YOH WMJ 7.61905
513 4QRH 0O2 7.61905
514 1Z0J GTP 7.64706
515 1YZQ GNP 7.64706
516 1XP8 AGS 7.65027
517 3TKL GTP 7.65306
518 1YVD GNP 7.69231
519 2OBM ADP 7.78098
520 1VHT BA3 7.79817
521 3H86 AP5 7.8125
522 1ION ADP 7.81893
523 4OI4 ATP 7.82609
524 2WJH GDP 7.83133
525 3Q72 GNP 7.83133
526 2WJH FLC 7.83133
527 6CRK GDP 7.88732
528 5H7K GDP 7.88732
529 2WIC GNP 7.88732
530 5FHD ADP ALF 7.88732
531 5FTB ANP 7.88732
532 3WYG GTP 7.89474
533 4NSQ COA 7.89474
534 4TTQ ATP 7.90698
535 2XTZ GSP 7.9096
536 5WRJ A3P 7.92079
537 2EW1 GNP 7.9602
538 2CHG ANP 7.9646
539 4WZA ADP 7.97101
540 4WZA ACP 7.97101
541 2KIN ADP 7.98319
542 1KO8 6PG 8
543 2HT6 GDP 8.04598
544 1F2U ATP 8.05369
545 2OZE AGS 8.05369
546 4XTR ADP 8.10811
547 4XTR ATP 8.10811
548 1YZN GNP 8.10811
549 5J1S ATP 8.13008
550 3DKP ADP 8.16327
551 2RCN GDP 8.16901
552 3T34 GDP 8.16901
553 2GKS ADP 8.16901
554 3PCR GTP 8.16901
555 4RZ3 ADP 8.16901
556 4QM7 GTP 8.18713
557 1G16 GDP 8.23529
558 1Z08 GNP 8.23529
559 3KJI ADP 8.26772
560 3SFV GDP 8.28729
561 2EFE GNH 8.28729
562 5O74 GDP 8.33333
563 4HDO GNP 8.38323
564 4NE2 SH2 8.38323
565 4NE2 ADP 8.38323
566 4HDQ GNP 8.38323
567 4DCT GDP 8.4507
568 5WC2 ADP 8.4507
569 1KK8 BEF ADP 8.4507
570 2CDN ADP 8.45771
571 3A4M ADP 8.46154
572 5BQ5 ADP BEF 8.46561
573 3NKV GNP 8.57143
574 2ZR9 DTP 8.59599
575 1D5C GDP 8.64198
576 3RWO GDP 8.64865
577 2FH5 GTP 8.64865
578 4TL6 ANP 8.69565
579 3CNL GNP 8.73239
580 3RLF ANP 8.73239
581 1GXU 2HP 8.79121
582 5UIV ADP 8.81057
583 1DS6 GDP 8.88889
584 4WOP CTP 8.88889
585 1OIX GDP 8.90052
586 5JCZ GDP 8.93855
587 2B8T THM 8.96861
588 5UQW GDP 8.99471
589 3UIE ANP 9
590 4LX0 BEF GDP 9.03955
591 2F9L GDP 9.04523
592 1UAD GNP 9.14286
593 4KOT CE3 9.25926
594 4GBM A3P 9.28793
595 2QN6 GDP 9.29577
596 2Y65 ADP 9.29577
597 4RD0 GDP 9.29577
598 1M7G AV2 9.47867
599 1M7G ADP 9.47867
600 1M7G ADX 9.47867
601 1U8Z GDP 9.52381
602 1OE0 TTP 9.56522
603 3CV2 OXL 9.57747
604 4BQS K2Q 9.65909
605 4BQS ADP 9.65909
606 4V03 ADP 9.72763
607 3PQC GDP 9.74359
608 5BN3 ADP 9.85915
609 4QDI ATP 9.85915
610 4K81 GTP 9.94152
611 4GOJ GNP 10
612 6B8B ADP 10.0402
613 5O2T GSP 10.0592
614 1WWZ ACO 10.0629
615 2OFW ADX 10.0962
616 4KVG GTP 10.119
617 1G3Q ADP 10.1266
618 1HTW ADP 10.1266
619 1S8F GDP 10.1695
620 4E03 ADP 10.1942
621 1FQJ GDP 10.2041
622 1CLU DBG 10.241
623 2UZI GTP 10.241
624 2WMO GTP 10.4225
625 1JBW ACQ 10.4225
626 2ZPT A3P 10.8475
627 2A5F GTP 10.8571
628 3AQ4 GDP 10.8696
629 5LLB 6YZ 11.0266
630 2C5L GTP 11.1111
631 3GJ7 GDP 11.2245
632 4TMK T5A 11.2676
633 1BG2 ADP 11.3846
634 1NN5 2DT 11.6279
635 1NN5 ANP 11.6279
636 5WDR GNP 11.6959
637 3N5C GDP 11.7284
638 2OG2 MLI 11.831
639 1FWY UD1 11.831
640 4AVB ACO 12.012
641 4ZI2 GNP 12.0301
642 3TMK T5A 12.037
643 1J2J GTP 12.0482
644 1O3Y GTP 12.0482
645 2J59 GTP 12.0482
646 1G7C 5GP 12.1127
647 5VGR GDP 12.1127
648 2V7Q ATP 12.1212
649 2V7Q ADP 12.1212
650 1B0U ATP 12.2137
651 5IFS ADP 12.2363
652 2PEZ GGZ 12.2905
653 2PEZ DAT 12.2905
654 1GUA GNP 12.3457
655 3KUD GDP 12.3457
656 3B5J 12D 12.3457
657 5UPK GNP 12.5
658 2F3R G5P 12.5604
659 1UJ2 ADP 12.6984
660 1UJ2 C5P 12.6984
661 2VB6 ADP BEF 12.7517
662 2ORV 4TA 12.8205
663 1ZUI SKM 13.0952
664 3E70 GDP 13.1098
665 5ZB0 ADP 13.1313
666 5ZB0 TYD 13.1313
667 2C9O ADP 13.2394
668 3CPJ GDP 13.8028
669 2BCG GDP 13.8028
670 3B9Q MLI 13.9073
671 5L3R GCP 14.3345
672 5E95 GDP 14.433
673 3ZIA ADP 14.7541
674 3ZIA ATP 14.7541
675 1W4R TTP 14.8718
676 1R9J TPP 15.2113
677 3DEF GDP 15.2672
678 2ZFZ ARG 16.4557
679 1LVG ADP 16.6667
680 1B7T ADP 16.6667
681 6C90 ADP 17.3077
682 4MKG AP5 17.9724
683 1S3G AP5 18.894
684 3BFV ADP 19.1882
685 3X1Z GNP 20.9581
686 3CH5 GDP 21.1538
687 2A9K GDP 22.4599
688 2IYL GDP 23.2394
689 3BC1 GNP 23.7288
690 2X77 GDP 23.8095
691 2OM2 GDP 25
692 1RJ9 GCP 25
693 4C4P GNP 25.2336
694 4KAX GTP 25.4438
695 1ZC3 GNP 26.5487
696 1TU3 GNP 27.8481
697 2W83 GTP 29.8701
698 4HI0 GDP 33.1658
699 4LPS GDP 36.7769
Pocket No.: 2; Query (leader) PDB : 3MD0; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3md0.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
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