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Receptor
PDB id Resolution Class Description Source Keywords
3M94 2.05 Å NON-ENZYME: TRANSCRIPT_TRANSLATE COMPLEX CRYSTAL STRUCTURE OF ASCARIS SUUM EIF4E-3 WITH M2,2, TRANSLATION INITIATION FACTOR 4E ASCARIS SUUM
Ref.: STRUCTURAL BASIS FOR NEMATODE EIF4E BINDING AN M2,2 AND ITS IMPLICATIONS FOR TRANSLATION INITIATION. NUCLEIC ACIDS RES. V. 39 8820 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACE C:0;
Invalid;
none;
submit data
44.053 C2 H4 O CC=O
M7M A:1;
Valid;
none;
submit data
487.296 C13 H23 N5 O11 P2 CN1CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3M94 2.05 Å NON-ENZYME: TRANSCRIPT_TRANSLATE COMPLEX CRYSTAL STRUCTURE OF ASCARIS SUUM EIF4E-3 WITH M2,2, TRANSLATION INITIATION FACTOR 4E ASCARIS SUUM
Ref.: STRUCTURAL BASIS FOR NEMATODE EIF4E BINDING AN M2,2 AND ITS IMPLICATIONS FOR TRANSLATION INITIATION. NUCLEIC ACIDS RES. V. 39 8820 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1WKW - GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
2 3HXG Kd = 0.27 uM GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
3 1EJ4 - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
4 2V8W Kd = 0.146 uM MGO C12 H20 N4 O14 P3 C[n+]1cn(c....
5 2V8Y Kd = 1.96 uM MGV C17 H20 F N5 O8 P c1cc(ccc1C....
6 2V8X Kd = 6.95 uM MGQ C17 H21 N5 O8 P c1ccc(cc1)....
7 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
8 2JGB Ka = 410000 M^-1 MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: M7M; Similar ligands found: 6
No: Ligand ECFP6 Tc MDL keys Tc
1 M7M 1 1
2 M7G 0.541667 0.963855
3 MGT 0.49505 0.963855
4 CDP 0.412371 0.797619
5 UDP 0.40625 0.771084
6 TPG 0.401515 0.931818
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3M94; Ligand: M7M; Similar sites found with APoc: 51
This union binding pocket(no: 1) in the query (biounit: 3m94.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 2X3F APC 2.1164
2 1F76 FMN 2.1164
3 4NPL AKG 2.1164
4 4CBU ATP 3.14961
5 5LUN OGA 3.1746
6 3FW9 SLX 3.1746
7 3AMN CBI 3.1746
8 3AMN CBK 3.1746
9 5ML3 DL3 3.3557
10 5O9W AKG 3.7037
11 2OFW ADX 3.7037
12 5M1T C2E 3.7037
13 4IAW LIZ 3.7234
14 1QY1 PRZ 4.02299
15 1VA6 ADP 4.2328
16 1VA6 P2S 4.2328
17 2J7T 274 4.2328
18 4I5I 4I5 4.2328
19 5XEG AKG 4.7619
20 5Z4T BMA BMA 4.7619
21 1P0F NAP 5.29101
22 4DRI RAP 5.55556
23 5C5T AKG 6.14035
24 1ZUA NAP 6.34921
25 1ZUA TOL 6.34921
26 6A0J GLC GLC GLC GLC 6.34921
27 4Y7U 2KH 6.34921
28 4DA6 GA2 6.87831
29 1K1Y ACR 6.87831
30 1YVM TMG 6.87831
31 1Y52 BTN 7.14286
32 5EOB 5QQ 7.40741
33 1XDS SAM 7.40741
34 4LAY I63 7.40741
35 5KWY C3S 7.40741
36 2FB3 GTP 7.93651
37 1GP6 QUE 8.46561
38 1GP6 SIN 8.46561
39 1GP6 DH2 8.46561
40 4IAE 1DX 8.46561
41 4NMC FAD 10.0529
42 4H2W AMP 10.6796
43 3O84 HTJ 11.6402
44 3LPF Z77 12.1693
45 5HUA FK5 14.7826
46 5C3R AKG 15.3439
47 5C3R HMU 15.3439
48 3SAO NKN 26.25
49 3HMO STU 29.4118
50 2QUN FUD 35.2941
51 3C2O NTM 35.2941
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