Receptor
PDB id Resolution Class Description Source Keywords
3KIF 2.5 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURES OF TWO FRAGMENTS TRUNCATED FROM 5-BLA PROPELLER LECTIN, TACHYLECTIN-2 (LIB1-B7-18 AND LIB2-D2-15) SYNTHETIC CONSTRUCT 5-BLADED -PROPELLER STRUCTURAL GENOMICS ISRAEL STRUCTURAL PROTEOMICS CENTER ISPC SUGAR BINDING PROTEIN
Ref.: METAMORPHIC PROTEINS MEDIATE EVOLUTIONARY TRANSITIO STRUCTURE PROC.NATL.ACAD.SCI.USA V. 107 7287 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDL A:110;
B:110;
D:238;
D:241;
E:110;
F:110;
G:110;
I:110;
J:110;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
219.192 C8 H13 N O6 CC(=O...
SO4 E:107;
J:107;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3KIF 2.5 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURES OF TWO FRAGMENTS TRUNCATED FROM 5-BLA PROPELLER LECTIN, TACHYLECTIN-2 (LIB1-B7-18 AND LIB2-D2-15) SYNTHETIC CONSTRUCT 5-BLADED -PROPELLER STRUCTURAL GENOMICS ISRAEL STRUCTURAL PROTEOMICS CENTER ISPC SUGAR BINDING PROTEIN
Ref.: METAMORPHIC PROTEINS MEDIATE EVOLUTIONARY TRANSITIO STRUCTURE PROC.NATL.ACAD.SCI.USA V. 107 7287 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 3KIH - GDL C8 H13 N O6 CC(=O)N[C@....
2 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDL; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 GDL 1 1
2 LOG 0.529412 0.754717
3 NBG 0.411765 0.906977
4 NAG MAN 0.409091 0.893617
5 8S0 0.404255 0.714286
6 149 0.404255 0.714286
7 LGC 0.404255 0.714286
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3kif.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3kif.bio2) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3kif.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3kif.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3kif.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3kif.bio3) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3kif.bio3) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3kif.bio3) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 3kif.bio3) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 3kif.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 3kif.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 3kif.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 13; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 13) in the query (biounit: 3kif.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 14; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 14) in the query (biounit: 3kif.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 15; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 15) in the query (biounit: 3kif.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 16; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 16) in the query (biounit: 3kif.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 17; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 17) in the query (biounit: 3kif.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 18; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 3kif.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
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