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Receptor
PDB id Resolution Class Description Source Keywords
3KIF 2.5 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURES OF TWO FRAGMENTS TRUNCATED FROM 5-BLA PROPELLER LECTIN, TACHYLECTIN-2 (LIB1-B7-18 AND LIB2-D2-15) SYNTHETIC CONSTRUCT 5-BLADED -PROPELLER STRUCTURAL GENOMICS ISRAEL STRUCTURAL PROTEOMICS CENTER ISPC SUGAR BINDING PROTEIN
Ref.: METAMORPHIC PROTEINS MEDIATE EVOLUTIONARY TRANSITIO STRUCTURE PROC.NATL.ACAD.SCI.USA V. 107 7287 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDL A:110;
B:110;
D:238;
D:241;
E:110;
F:110;
G:110;
I:110;
J:110;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
219.192 C8 H13 N O6 CC(=O...
SO4 E:107;
J:107;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3KIF 2.5 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURES OF TWO FRAGMENTS TRUNCATED FROM 5-BLA PROPELLER LECTIN, TACHYLECTIN-2 (LIB1-B7-18 AND LIB2-D2-15) SYNTHETIC CONSTRUCT 5-BLADED -PROPELLER STRUCTURAL GENOMICS ISRAEL STRUCTURAL PROTEOMICS CENTER ISPC SUGAR BINDING PROTEIN
Ref.: METAMORPHIC PROTEINS MEDIATE EVOLUTIONARY TRANSITIO STRUCTURE PROC.NATL.ACAD.SCI.USA V. 107 7287 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 3KIH - GDL C8 H13 N O6 CC(=O)N[C@....
2 3KIF - GDL C8 H13 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDL; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 GDL 1 1
2 LOG 0.529412 0.754717
3 NBG 0.411765 0.906977
4 NAG MAN 0.409091 0.893617
5 8S0 0.404255 0.714286
6 149 0.404255 0.714286
7 LGC 0.404255 0.714286
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 343
This union binding pocket(no: 1) in the query (biounit: 3kif.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 1U7Z PMT None
2 2F9L GDP None
3 3GBR PRP None
4 4USI ATP None
5 4FN4 NAD None
6 2W83 GTP None
7 3FRH SAH None
8 4NBT NAD None
9 3MQG ACO None
10 5L95 AMP None
11 4ITU NAI None
12 2BGM NAJ None
13 3NCQ ATP None
14 4CKL SM8 None
15 2JCB ADP None
16 5BSH PRO None
17 4ITU 1HS None
18 2XTZ GSP None
19 4OOE FOM None
20 1G16 GDP None
21 5Y2W PGA None
22 2Q6B HR2 1.88679
23 5OBY ANP 1.88679
24 2GDZ NAD 1.88679
25 1IG3 VIB 1.88679
26 3H4V NAP 1.88679
27 3H4V DVP 1.88679
28 1S16 ANP 2.83019
29 4NBU NAI 2.83019
30 3EAU NDP 2.83019
31 3EAU PDN 2.83019
32 3EWR APR 2.83019
33 4BNU 9KQ 2.83019
34 5E9W SAH 2.83019
35 5E8J SAH 2.83019
36 2O66 FLC 2.83019
37 3G2O SAM 2.83019
38 3KLJ FAD 2.83019
39 2XWL CTP 2.83019
40 1YB5 NAP 2.83019
41 2ZL4 ALA ALA ALA ALA 2.83019
42 5GWT NAD 2.83019
43 5GWT SIN 2.83019
44 3VZS NAP 2.83019
45 5KOK R9T 3.77358
46 5KOK S9T 3.77358
47 5KOK SAH 3.77358
48 1GEG NAD 3.77358
49 4J56 FAD 3.77358
50 2Z3Y F2N 3.77358
51 2A14 SAH 3.77358
52 4JTA NAP 3.77358
53 3MJY IJZ 3.77358
54 3MJY FMN 3.77358
55 1I8T FAD 3.77358
56 5XWV NDP 3.77358
57 5XWV 8H6 3.77358
58 1FK8 NAD 3.77358
59 2WOE AR6 3.77358
60 4DHY GLC 3.77358
61 2RGJ FAD 3.77358
62 3LKZ SFG 3.77358
63 1ZGD NAP 3.77358
64 4D86 ADP 4.33735
65 2Q0L FAD 4.71698
66 6GBC AMP 4.71698
67 5Z75 NAD 4.71698
68 2QZZ EMF 4.71698
69 2QZZ NAP 4.71698
70 3LCV SAM 4.71698
71 4CZG ADP 4.71698
72 4CZG QH3 4.71698
73 5I60 67W 4.71698
74 2YY7 NAD 4.71698
75 1D6S MET PLP 4.71698
76 4M73 SAH 4.71698
77 5W7M SAH 4.71698
78 2OBF F83 4.71698
79 2OBF SAH 4.71698
80 4M73 M72 4.71698
81 1LVW TYD 4.71698
82 1SVM ATP 4.71698
83 5EEH SAH 4.71698
84 5EEH P9P 4.71698
85 1D6S PLP MET 4.71698
86 4NBI D3Y 4.71698
87 1H65 GDP 4.71698
88 3TN7 NJP 4.71698
89 2QWO ADP 4.71698
90 1QZR ANP 4.71698
91 3FPZ AHZ 4.71698
92 5ULP KB1 4.71698
93 5BUK FAD 5.66038
94 3LZW FAD 5.66038
95 3LZW NAP 5.66038
96 2WTX UDP 5.66038
97 2WTX VDO 5.66038
98 5YYF PHQ GLN THR ALA ARG LYS NH2 FOA 5.66038
99 4MO4 ACP 5.66038
100 2CVQ NDP 5.66038
101 4A62 ANP 5.66038
102 2CFC NAD 5.66038
103 1H5T DAU 5.66038
104 3SJ7 NDP 5.66038
105 2AMT 1AA 5.66038
106 3WMX NAD 5.66038
107 3C3N FMN 5.66038
108 1H5R THM 5.66038
109 4Y9D NAI 5.66038
110 4NVQ SAH 5.66038
111 2BHZ MAL 5.66038
112 3M54 SAH 5.66038
113 1G51 AMO 5.66038
114 2IU8 PLM 5.66038
115 1RLZ NAD 5.66038
116 1VG8 GNP 5.66038
117 3LST SAH 5.66038
118 5K4W THR 5.66038
119 5K4W NAI 5.66038
120 3KO8 NAD 5.66038
121 6MB9 NMY 5.66038
122 6MB9 COA 5.66038
123 1RJD SAM 5.66038
124 4NEC SAH 5.66038
125 5Y72 DST 5.66038
126 4M9Q GNP 5.66038
127 6EJI UD2 5.66038
128 4LHW GNP 5.66038
129 1IK4 PGH 5.66038
130 4CTA ATP 5.66038
131 5FFF NAP 6.60377
132 1YXM ADE 6.60377
133 2VBU CDP 6.60377
134 1LQA NDP 6.60377
135 3OID NDP 6.60377
136 4I42 1HA 6.60377
137 5MZI FYK 6.60377
138 5MZI FAD 6.60377
139 5TV6 PML 6.60377
140 5ZI2 NAD 6.60377
141 5ZI2 ADP 6.60377
142 3OU2 SAH 6.60377
143 3WQT ANP 6.60377
144 6GNA FAD 6.60377
145 3JVH HHV 6.60377
146 5JGL SAM 6.60377
147 4HA6 FAD 6.60377
148 4B9Q ATP 6.60377
149 2NLI LAC 6.60377
150 2NLI FMN 6.60377
151 3LCC SAH 6.60377
152 4ZA2 NAD 6.60377
153 4QIJ 1HA 6.60377
154 1ZEM NAD 6.60377
155 2FK8 SAM 6.60377
156 4ZL4 4PK 6.60377
157 1T36 ADP 6.60377
158 3MAX LLX 6.60377
159 2NVK FAD 6.60377
160 5ERG SAM 7.54717
161 1T9D P22 7.54717
162 1C1X HFA 7.54717
163 1BW9 PPY 7.54717
164 5U8U FAD 7.54717
165 5WKC AUJ 7.54717
166 5W7R 9Z7 7.54717
167 5W7R SAH 7.54717
168 2IHU TP9 7.54717
169 2IHT TPP 7.54717
170 1UPA TPP 7.54717
171 1TPY SAH 7.54717
172 5U61 7WG 7.54717
173 5ODQ FAD 7.54717
174 6D6Y SAH 7.54717
175 3AFN NAP 7.54717
176 4PQG NAG 7.54717
177 1NF3 GNP 7.54717
178 1T9D FAD 7.54717
179 2BD0 NAP 7.54717
180 5I0H ADP BEF 7.54717
181 1ZX5 LFR 7.54717
182 5WKC TP9 7.54717
183 3KJS NAP 7.54717
184 1COY FAD 7.54717
185 3A28 NAD 7.54717
186 4ZG4 VO4 ADP 7.54717
187 2Q2V NAD 7.54717
188 2IVD FAD 7.54717
189 2NV2 GLN 7.54717
190 3EFS BTN 7.54717
191 2Z7R STU 7.54717
192 4NBW NAD 7.54717
193 5HXI FAD 7.54717
194 5HXI 5HN 7.54717
195 1KPG SAH 8.49057
196 3AB1 FAD 8.49057
197 4C2G ALA ALA ALA ALA 8.49057
198 5J5Z FAD 8.49057
199 3QWI CUE 8.49057
200 4D57 ARG AMP 8.49057
201 4MO2 FAD 8.49057
202 4CQM NAP 8.49057
203 3KCC CMP 8.49057
204 1FL2 FAD 8.49057
205 5THQ NDP 8.49057
206 3LAD FAD 8.49057
207 1VPE ANP 8.49057
208 1H5Q NAP 8.49057
209 5LEF GTP 8.49057
210 3PPM JG1 8.49057
211 5O98 NAP 8.49057
212 4QTU SAM 8.49057
213 6H3O FAD 8.49057
214 1NVM NAD 8.49057
215 6C2Z P1T 8.49057
216 1GZ4 ATP 8.49057
217 2ZFZ ARG 8.86076
218 5THZ SAH 9.43396
219 6GAS FAD 9.43396
220 1U1W 3HA 9.43396
221 4O0L NDP 9.43396
222 3A3B RBF 9.43396
223 2AE2 PTO 9.43396
224 1SVK ALF GDP 9.43396
225 1D4O NAP 9.43396
226 4O1M NAD 9.43396
227 5TWJ SAM 9.43396
228 3LXR GDP 9.43396
229 3A3B FMN 9.43396
230 4JNE ATP 9.43396
231 4BQH 9VU 9.43396
232 3ITJ FAD 10.3774
233 2JJK R15 10.3774
234 1VL0 NAI 10.3774
235 3E1T FAD 10.3774
236 4GUT FAD 10.3774
237 2IID PHE 10.3774
238 3GGO ENO 10.3774
239 3GGO NAI 10.3774
240 5EXW 7DT 10.3774
241 4J36 1HR 10.3774
242 4J36 FAD 10.3774
243 6EOF ADP 10.3774
244 2VZZ SCA 10.3774
245 4FWE FAD 10.3774
246 1QAN SAH 10.3774
247 5NNS AKR 11.3208
248 1OFD AKG 11.3208
249 1OFD FMN 11.3208
250 3MB5 SAM 11.3208
251 5KOR GDP 11.3208
252 5GSN FAD 11.3208
253 2IMF TOM 11.3208
254 2IMF GSH 11.3208
255 1AE1 NAP 11.3208
256 1M9H NAD 11.3208
257 4GOJ GNP 11.3208
258 6ECW SAH 11.3208
259 3ZS7 ATP 11.3208
260 4RF2 NAP 11.3208
261 1KPH SAH 12.2642
262 5YJI 8WO 12.2642
263 5YJI SAH 12.2642
264 1L1E SAH 12.2642
265 4EIL NDP 12.2642
266 1F0X FAD 12.2642
267 1O3Y GTP 12.2642
268 1X9I G6Q 12.2642
269 1GUZ NAD 12.2642
270 3VC3 C6P 13.2075
271 2J59 GTP 13.2075
272 5BSZ SAH 13.2075
273 3RZ3 U94 13.2075
274 5MZY 8EZ 13.2075
275 3ZFD ANP 13.2075
276 3CH6 NAP 14.1509
277 3CH6 311 14.1509
278 5OBU ANP 14.1509
279 3RFV NAI 14.1509
280 4RSL FAD 14.1509
281 5XNC MTA 14.1509
282 5DF1 58X 15.0943
283 5DF1 NAP 15.0943
284 3AD8 NAD 15.0943
285 3GXO SAH 15.0943
286 5OF9 ANP 15.0943
287 3GWZ SAH 15.0943
288 3JSX FAD 15.0943
289 2ZWA SAH 15.0943
290 3SSO SAH 15.0943
291 6CZ7 MGD 16.0377
292 3NKS FAD 16.0377
293 2AJ4 ANP 16.0377
294 3A1I UNU 16.0377
295 2C7G ODP 16.0377
296 2C7G FAD 16.0377
297 5UPK GNP 16.0377
298 1REO FAD 16.0377
299 4I4Z 2NE 16.9811
300 3K56 IS3 16.9811
301 5W7K SAH 16.9811
302 6GNF QPS 17.9245
303 6GNF GLC 17.9245
304 1D5Z ACE ALC ARG ALA ODA SER LEU NH2 17.9245
305 2B9W FAD 17.9245
306 5YJF SAH 17.9245
307 5YJF 8WO 17.9245
308 5XWC 2IT 17.9245
309 5XWC NAP 17.9245
310 5XWC 8GL 17.9245
311 1X87 NAD 17.9245
312 1CX4 CMP 17.9245
313 3MKH FAD 18.8679
314 3X0V FAD 18.8679
315 3A4V NAD 19.8113
316 3A4V PYR 19.8113
317 2VDV SAM 20.7547
318 4CM9 NAP 20.7547
319 4CME NAP 20.7547
320 5DI9 GNP 20.7547
321 5UWS GNP 20.7547
322 3JQ8 NAP 20.7547
323 3JQ9 NAP 20.7547
324 4CM4 NAP 20.7547
325 3JQA NAP 20.7547
326 5JDI NAP 20.7547
327 4CMI NAP 20.7547
328 2WD7 NAP 20.7547
329 4CLO NAP 20.7547
330 3BMO NAP 20.7547
331 3JQF NAP 20.7547
332 4CM8 NAP 20.7547
333 3JQB NAP 20.7547
334 3BMN NAP 20.7547
335 2JHP SAH 21.6981
336 1SIV PSI 22.2222
337 3RIY NAD 22.6415
338 1Z2I NAD 23.5849
339 2AG5 NAD 24.5283
340 4KP7 1UQ 24.5283
341 2NXW TPP 26.4151
342 4D0G GTP 28.9855
343 6DIO NAD 29.2453
Pocket No.: 2; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 180
This union binding pocket(no: 2) in the query (biounit: 3kif.bio2) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 3KMT SAH None
2 4IMG NGF None
3 2J9C ATP None
4 3QLM PLM None
5 6CEN SAM None
6 2GJ8 ALF GDP None
7 6ASZ GLN THR ALA ARG M3L SER None
8 3ENG CBI None
9 4YNM SAM None
10 1P9P SAH None
11 2UZH CDP None
12 1WPY BTN None
13 5LOG SAH None
14 3X1Z GNP None
15 1N07 ADP None
16 1N07 FMN None
17 5FVJ ACO None
18 1KGZ PRP 1.88679
19 5CZY SAM 1.88679
20 4EHU ANP 1.88679
21 4OXI GAP 1.88679
22 3BIB PSF 1.88679
23 5N81 8Q2 1.88679
24 5ERR ADP 2.83019
25 1YQZ FAD 2.83019
26 4ZRN NAD 2.83019
27 3FPF MTA 2.83019
28 4ZRN UPG 2.83019
29 3FPF TNA 2.83019
30 4O4K 2PK 2.83019
31 1NFQ NAI 2.83019
32 2YY8 MTA 2.83019
33 3EWP APR 2.83019
34 4Q4K FMN 2.83019
35 1Z6Z NAP 2.83019
36 6AU6 GDP 2.83019
37 5OVL NAP 2.83019
38 3QXY SAM 3.77358
39 5TUZ SAM 3.77358
40 5TUZ 7L6 3.77358
41 2YCH ATP 3.77358
42 3SWC SAH 3.77358
43 3DOE GTP 3.77358
44 2RFI SAH 3.77358
45 3HNA SAH 3.77358
46 4XDA RIB 3.77358
47 4XDA ADP 3.77358
48 5B4T NAD 3.77358
49 5B4T 3HR 3.77358
50 2GQS C2R 3.77358
51 4JEM C5P 3.77358
52 1PJS SAH 3.77358
53 2A2C NG1 4.71698
54 2A2C ADP 4.71698
55 5J60 FAD 4.71698
56 1Z08 GNP 4.71698
57 2Q7V FAD 4.71698
58 3A2Q ACA ACA 4.71698
59 5WS9 AMP 4.71698
60 5HSA FAS 4.71698
61 1YBH P22 4.71698
62 5OVK NDP 4.71698
63 4R74 F6P 4.71698
64 5H5F SAM 4.71698
65 3QOX SAH 4.71698
66 1IYK MYA 4.71698
67 3ICT COA 4.71698
68 1YZN GNP 4.71698
69 5O4J SAH 4.71698
70 5O4J 9KH 4.71698
71 3ICS COA 4.71698
72 3MAG SAH 4.71698
73 5YLT C7N 5.66038
74 5YLT SFG 5.66038
75 4NVQ 2OD 5.66038
76 4J8O SAH 5.66038
77 2F69 SAH 5.66038
78 1MT6 SAH 5.66038
79 1RSG FAD 5.66038
80 5O96 SAM 5.66038
81 5T0K SAM 5.66038
82 4P6G 2FZ 5.66038
83 5JIY SAM 5.66038
84 2GQT FAD 5.66038
85 3UA1 08Y 5.66038
86 4KQI RBZ 5.66038
87 2PZM NAD 5.66038
88 2PZM UDP 5.66038
89 5AHM IMP 5.66038
90 5Z99 SLB 5.66038
91 1XA4 COA 5.66038
92 1JQ9 PHE LEU SER TYR LYS 5.66038
93 5DI3 GNP 5.66038
94 3NTD COA 5.66038
95 4RJK TPP 5.66038
96 3VIU ADP 5.66038
97 1D8C SOR 5.66038
98 3S7D SAH 5.66038
99 3TG5 SAH 5.66038
100 3IWD M2T 5.88235
101 4C1Q SAH 6.60377
102 5IF4 6AK 6.60377
103 5AHS FAD 6.60377
104 2PO3 T4K 6.60377
105 5Y77 FAD 6.60377
106 4C8E C5P 6.60377
107 1JG3 ADN 6.60377
108 3SIG AR6 6.60377
109 2VK4 TPP 6.60377
110 4DV8 0LX 6.60377
111 2Q1W NAD 6.60377
112 1ZCB GDP 6.60377
113 3TNF GNP 6.60377
114 5GT9 NAP 6.60377
115 4FE2 AIR 6.60377
116 6FTB M0E 7.54717
117 2VJ8 HA2 7.54717
118 4X7R NTO 7.54717
119 6DWI HD4 7.54717
120 3TA2 AKG 7.54717
121 4WZH FMN 7.54717
122 1NPD NAD 7.54717
123 4BGB ADP 7.54717
124 2H21 SAM 8.49057
125 5HQ8 SAH 8.49057
126 5CCM SAM 8.49057
127 3MVH WFE 8.49057
128 2OO0 XAP 8.49057
129 3QWI NAP 8.49057
130 5EVY FAD 8.49057
131 5THY SAH 9.43396
132 4ZLU 4PW 9.43396
133 4MZU COA 9.43396
134 4CBU ATP 9.43396
135 4ZLU ADP 9.43396
136 4HSU FAD 10.3774
137 4GUS FAD 10.3774
138 1NZY BCA 10.3774
139 1DJN ADP 10.3774
140 5WUW NAP 10.3774
141 1JXZ BCA 10.3774
142 5GZ9 MAN 10.3774
143 3ZOK GLY 11.3208
144 3QVP FAD 11.3208
145 5UY8 AMZ 11.3208
146 3W8X FAD 11.3208
147 3W8X FTK 11.3208
148 1O94 ADP 11.3208
149 2VJM COA 11.3208
150 1E6E FAD 11.3208
151 5UY8 8UM 11.3208
152 1VGR COA 11.3208
153 1M2O GNP 12.2642
154 1H82 FAD 13.2075
155 1H82 GZZ 13.2075
156 5U97 PIT 13.2075
157 4D9M 0JO 13.2075
158 5XFV FMN 13.2075
159 4FMU 0UM 14.1509
160 5CPR SAM 14.1509
161 1UWK NAD 14.1509
162 1UWK URO 14.1509
163 4E1Z 0MX 14.1509
164 3ETG NDP 14.1509
165 3ETG GLU 14.1509
166 5V22 SAH 14.1509
167 1NAA 6FA 15.0943
168 1WG8 SAM 15.0943
169 1NVT NAP 15.0943
170 6DA9 FMN 16.0377
171 1E96 GTP 16.0377
172 2R3A SAM 16.0377
173 4IV9 FAD 16.9811
174 2PID YSA 16.9811
175 1CS4 GSP 16.9811
176 2JB2 PHE 17.9245
177 4USQ FAD 17.9245
178 6GD6 EVB 17.9245
179 3LU1 NAD 19.8113
180 3T1O GDP 31.1321
Pocket No.: 3; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 273
This union binding pocket(no: 3) in the query (biounit: 3kif.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 4UP3 FAD None
2 4HE2 AMP None
3 4A4X JUP None
4 1SOW NAD None
5 3T3C 017 None
6 1IV2 CDP None
7 5O3Q CMP None
8 4PLG NAI None
9 4PLG OXM None
10 2J9D ADP None
11 1S17 GNR None
12 3GGU 017 None
13 5UBG PRT None
14 6HOY AR6 None
15 3RG9 NDP None
16 3RG9 WRA None
17 4JGP PYR None
18 5NIU 8YZ None
19 4UX9 ANP 1.88679
20 4EU7 COA 1.88679
21 2PLK P3D 1.88679
22 5TWB FAD 1.88679
23 1U72 NDP 1.88679
24 1U72 MTX 1.88679
25 5EOB 5QQ 1.88679
26 5MBX FAD 1.88679
27 5MBX SP5 1.88679
28 2O4C NAD 1.88679
29 3CIF G3H 1.88679
30 3FVQ ATP 1.88679
31 2OFW ADX 1.88679
32 6FIV 3TL 1.88679
33 1Q8Y ADP 2.83019
34 4FG8 ATP 2.83019
35 2GOO NDG 2.83019
36 2CDC NAP 2.83019
37 2CDC XYS 2.83019
38 2CDC XYP 2.83019
39 2HSA FMN 2.83019
40 3WLE NAD 2.83019
41 5GMD DP6 2.83019
42 1U7T NAD 2.83019
43 4L3L 5FI 2.83019
44 1GQ2 NAP 2.83019
45 3MWS 017 3.0303
46 5DMZ ADP 3.77358
47 5AE2 FYC 3.77358
48 1BYG STU 3.77358
49 3CGD NAD 3.77358
50 6C0T EE4 3.77358
51 5C03 AGS 3.77358
52 2HQM FAD 3.77358
53 1VJY 460 3.77358
54 1ZVW PRP 3.77358
55 5JGA 6KC 3.77358
56 3A5Y KAA 3.77358
57 3NUG NAD 3.77358
58 3OV6 MK0 3.77358
59 1XXA ARG 3.84615
60 1F8Y 5MD 4.71698
61 6FYL 3NG 4.71698
62 5DH3 5BS 4.71698
63 4C3Y FAD 4.71698
64 1YBH FAD 4.71698
65 2RIO ADP 4.71698
66 3ICT ADP 4.71698
67 2AQJ TRP 4.71698
68 2AQJ FAD 4.71698
69 2ZXI FAD 4.71698
70 6A1G 9OL 4.71698
71 3NRR D16 4.71698
72 4IWN GEK 4.71698
73 1N2X SAM 4.71698
74 1IYK MIM 4.71698
75 1K6M AGS 4.71698
76 3WV8 ATP 4.71698
77 2WKT COA 4.71698
78 3K7M FAD 5.66038
79 2XK9 XK9 5.66038
80 5MQ6 NDP 5.66038
81 3TDV GDP 5.66038
82 4OH4 ANP 5.66038
83 2GAG NAD 5.66038
84 3PLS ANP 5.66038
85 1E1O LYS 5.66038
86 1YY5 FAD 5.66038
87 4D04 FAD 5.66038
88 4D04 NAP 5.66038
89 1ZK7 FAD 5.66038
90 4YKG NAD 5.66038
91 4YKG FAD 5.66038
92 1T90 NAD 5.66038
93 1LVL NAD 5.66038
94 3ORF NAD 5.66038
95 5X68 FAD 5.66038
96 4FFS BIG 5.66038
97 1QRD FAD 5.66038
98 4DXJ IPE 5.66038
99 3TKY SAH 5.66038
100 3RKR NAP 5.66038
101 1XHL NDP 5.66038
102 5EOW FAD 5.66038
103 3S5W NAP 5.66038
104 3TTI KBI 6.60377
105 3NEM AMO 6.60377
106 2WPF WPF 6.60377
107 2WPF FAD 6.60377
108 3UOY NAP 6.60377
109 3UOY FAD 6.60377
110 1T26 GBD 6.60377
111 1T26 NAI 6.60377
112 3IID APR 6.60377
113 4PLT NAI 6.60377
114 3IGO ANP 6.60377
115 1FFU FAD 6.60377
116 1GZ6 NAI 6.60377
117 3PVW QRX 6.60377
118 4PLT OXM 6.60377
119 3AYI FAD 6.60377
120 3AYI HCI 6.60377
121 3IX9 NDP 6.60377
122 5E65 5N6 GAL 6.60377
123 2A92 NAI 6.60377
124 2PWY SAH 6.60377
125 1QPB PYM 6.60377
126 1DFO PLG 6.60377
127 4NW6 2NS 7.54717
128 1O9J NAD 7.54717
129 2WOX NDP 7.54717
130 1FEC FAD 7.54717
131 2RGH FAD 7.54717
132 1WDK NAD 7.54717
133 5WKC FAD 7.54717
134 4DR9 BB2 7.54717
135 4ONA UW1 7.54717
136 5C4L SIS 7.54717
137 2Q3O FMN 7.54717
138 1VI2 NAD 7.54717
139 3UG4 AHR 7.54717
140 3BIY 01K 7.54717
141 4H3P ANP 7.54717
142 2PVN P63 7.54717
143 3KJS DQ1 7.54717
144 3IAE D7K 7.54717
145 4CS4 ANP 8.49057
146 4CS4 AXZ 8.49057
147 2R5T ANP 8.49057
148 5MIT NAP 8.49057
149 5MIT FAD 8.49057
150 2F5Z FAD 8.49057
151 2CUL FAD 8.49057
152 1LDM NAD 8.49057
153 5G3U ITW 8.49057
154 4REP FAD 8.49057
155 5LVP ATP 8.49057
156 4Q9N NAI 8.49057
157 4MO2 FDA 8.49057
158 4E5N NAD 8.49057
159 2I7N ACO 8.49057
160 1X7D ORN 8.49057
161 3RNM FAD 8.62069
162 4LZJ 22H 9.43396
163 5TS5 FAD 9.43396
164 3RLF ANP 9.43396
165 4PXL NAD 9.43396
166 4F9C 0SX 9.43396
167 5YPU ATP 9.43396
168 1PHK ATP 9.43396
169 5HTX ADP 9.43396
170 1U5R ATP 9.43396
171 4NTC FAD 9.43396
172 3MN7 ATP 9.43396
173 3NRZ FAD 9.43396
174 4XL4 COA 9.43396
175 1FIQ FAD 9.43396
176 3G5S FAD 9.43396
177 1YNH SUO 9.43396
178 2BIF ANP 9.43396
179 3ORK AGS 10.3774
180 4WNK 453 10.3774
181 2IID FAD 10.3774
182 4EUU BX7 10.3774
183 3KC1 2T6 10.3774
184 3GD4 NAD 10.3774
185 3OTI TYD 10.3774
186 3OZ2 FAD 10.3774
187 4XUC SAM 10.3774
188 4XUC 43G 10.3774
189 3C0G 3AM 10.3774
190 4YZN 4K5 10.3774
191 2CSN CKI 11.3208
192 6CMJ F6J 11.3208
193 2YVJ FAD 11.3208
194 5L8L ADP 11.3208
195 2YVF NAD 11.3208
196 3GNI ATP 11.3208
197 1D4D FAD 11.3208
198 5J7X FAD 11.3208
199 1L3I SAH 11.3208
200 2VVL FAD 11.3208
201 1I9G SAM 11.3208
202 1N62 FAD 11.3208
203 3M6P BB2 11.3208
204 4BFM ANP 12.2642
205 5TTJ FAD 12.2642
206 5HR5 ADP 12.2642
207 3FHI ANP 12.2642
208 1TKB N1T 12.2642
209 2P8O BVA 12.2642
210 3QT6 2P0 12.2642
211 3A5Z KAA 12.2642
212 5GUD 2IT 12.2642
213 5GUD NDP 12.2642
214 6CI9 NAP 12.2642
215 4OTH DRN 12.2642
216 6BXI ANP 13.2075
217 1PS9 NAP 13.2075
218 2BPM 529 13.2075
219 1XJD STU 13.2075
220 5HCY 60D 13.2075
221 2GMV UN8 13.2075
222 5X40 ACP 13.2075
223 4L9I 8PR 13.2075
224 4LOO SB4 13.2075
225 4GQB 0XU 13.2075
226 4PNI KQQ 13.2075
227 4P3H 25G 13.2075
228 5LY3 ADP 14.1509
229 3T31 DCQ 14.1509
230 3ETG GTP 14.1509
231 5JZJ AN2 15.0943
232 5ECP ATP 15.0943
233 5ECP MET 15.0943
234 6CGD AKN 15.0943
235 6CGD GNP 15.0943
236 4YCA NDP 15.0943
237 3JSX CC2 15.0943
238 1V3S ATP 15.0943
239 2WET FAD 15.0943
240 3VZ3 NAP 15.0943
241 5G1X ADP 15.873
242 6ER9 NAP 16.0377
243 6ER9 FAD 16.0377
244 2QCS ANP 16.0377
245 4XQC 13D 16.0377
246 4XQC NAD 16.0377
247 1EBF NAD 16.0377
248 3NK7 SAM 16.0377
249 5UKL SIX 16.9811
250 1VDC FAD 16.9811
251 5N87 N66 16.9811
252 5XVG 8FX 16.9811
253 2A19 ANP 16.9811
254 4YSX FAD 17.9245
255 3E8N ATP 17.9245
256 3E8N VRA 17.9245
257 1V0O INR 17.9245
258 1KNR FAD 18.8679
259 5A6N U7E 18.8679
260 5LI1 ANP 18.8679
261 5LI9 ACP 18.8679
262 5L13 6ZE 19.8113
263 4WB6 ATP 19.8113
264 6HKE MLT 20.7547
265 6HKE LMR 20.7547
266 2II3 CAO 20.7547
267 4RLQ 3SK 21.6981
268 3V8S 0HD 23.5849
269 2YAK OSV 23.5849
270 5JIL 6KL 25.4717
271 4C2W ANP 28.3019
272 4USR FAD 29.2453
273 5EYK 5U5 29.2453
Pocket No.: 4; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 111
This union binding pocket(no: 4) in the query (biounit: 3kif.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 4UP5 94W None
2 3LF0 ATP None
3 3U7S 017 None
4 1FP1 SAH None
5 6FA4 GNP None
6 4M8X KGQ None
7 1EZ4 NAD None
8 1GUA GNP None
9 5GG9 8GM 1.88679
10 3WV1 WHH 1.88679
11 1Q7B NAP 1.88679
12 1LTH NAD 2.83019
13 4UWJ 7L5 2.83019
14 4UWJ MYA 2.83019
15 2BVL GLC 2.83019
16 2BVL UDP 2.83019
17 3GF4 FAD 2.83019
18 1U3G THF 2.83019
19 3KA2 2NC 2.83019
20 5TO8 7FM 2.83019
21 1P9B GDP 2.83019
22 4YHQ G10 3.0303
23 2P3C 3TL 3.0303
24 3HB5 NAP 3.77358
25 1UAD GNP 3.77358
26 2JL1 NAP 3.77358
27 3H8V ATP 3.77358
28 1KNM LAT 3.77358
29 1HZP DAO 3.77358
30 1XDS SAM 3.77358
31 5KVM THR TYR PHE ALA VAL LEU MET VAL SER 3.77358
32 5UR1 YY9 4.71698
33 4C2X NHW 4.71698
34 5YB7 FAD 4.71698
35 5YB7 ORN 4.71698
36 4KIB SAH 4.71698
37 6F3M NAD 4.71698
38 1C0I BE2 4.71698
39 1C0I FAD 4.71698
40 1JA9 NDP 4.71698
41 2FV5 541 4.71698
42 5OGX FAD 4.71698
43 5O2T GSP 4.71698
44 2GAG FAD 5.66038
45 4URF NAD 5.66038
46 1V8B NAD 5.66038
47 4WGF HX2 5.66038
48 3O9Z AKG 5.66038
49 3O9Z NAD 5.66038
50 4XTX 590 5.66038
51 4Y30 SAH 5.66038
52 3HQ9 OXL 6.60377
53 1XHC FAD 6.60377
54 6GNC FAD 6.60377
55 1W78 ADP 6.60377
56 1W78 PD8 6.60377
57 1MI3 NAD 6.60377
58 3VPH OXM 7.54717
59 3CTY FAD 7.54717
60 2O07 MTA 7.54717
61 2O07 SPD 7.54717
62 3TA2 ATP 7.54717
63 4JK3 NAD 7.54717
64 5CQG 55C 7.54717
65 6C5B SAH 7.54717
66 4U8P UDP 7.54717
67 2ZIF SAM 7.54717
68 1C1X NAD 7.54717
69 4A6D SAM 7.54717
70 1RJW ETF 8.49057
71 5JBE GLC GLC GLC GLC GLC 8.49057
72 1X7D NAD 8.49057
73 4MOP 2H5 9.43396
74 1D7O NAD 9.43396
75 1D7O TCL 9.43396
76 1H6W SER LEU ASN TYR ILE ILE LYS VAL LYS GLU 9.43396
77 4II2 ATP 9.43396
78 3CIP ATP 9.43396
79 1HKU NAD 9.43396
80 1YNQ NDP 10.3774
81 4K81 GTP 10.3774
82 2C91 NAP 10.3774
83 3RAB GNP 10.3774
84 3HSS MLA 10.3774
85 9LDB NAD 10.3774
86 6H5E ANP 11.3208
87 5TUK FAD 11.3208
88 5KTC COA 11.3208
89 5KTC FUH 11.3208
90 1EXF GLY 12.2642
91 5MPT SAH 12.2642
92 4OM8 NAD 12.2642
93 5XK9 GST 12.2642
94 5XK9 DMA 12.2642
95 3WGT FAD 13.2075
96 3WGT QSC 13.2075
97 1NHX FTB 13.2075
98 1NHX PEP 13.2075
99 1LDN NAD 13.2075
100 1JBW ACQ 14.1509
101 1Z45 NAD 15.0943
102 1NVV GNP 15.0943
103 3UCL CYH 16.0377
104 3UCL FAD 16.0377
105 3UCL NAP 16.0377
106 3WYF GTP 16.9811
107 1Y8Q ATP 17.9245
108 2YB9 HA0 17.9245
109 2E5V FAD 19.8113
110 5ZBL AMP 20.7547
111 1NJJ ORX 34.9057
Pocket No.: 5; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 122
This union binding pocket(no: 5) in the query (biounit: 3kif.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 4PPF FLC None
2 2FXD DR7 None
3 1ZUI SKM None
4 1W4R TTP None
5 2O4N TPV None
6 5T2Z 017 None
7 1BAI 0Q4 None
8 3GD8 GOL 1.88679
9 5T2U NAP 1.88679
10 5WQP NAP 1.88679
11 4J7U YTZ 2.83019
12 4J7U NAP 2.83019
13 4XV1 904 2.83019
14 3O3R NAP 2.83019
15 2V7Y ADP 2.83019
16 4UA3 COA 2.83019
17 2B4B COA 3.77358
18 1KYZ SAH 4.71698
19 6F97 FAD 4.71698
20 2BUP ATP 4.71698
21 2BUP ADP 4.71698
22 2JAP NDP 4.71698
23 1H74 ILE 4.71698
24 2JAH NDP 4.71698
25 5M04 GDP 4.71698
26 1YKJ FAD 4.71698
27 1LFD GNP 4.71698
28 3LDQ 3P1 4.71698
29 1YQS BSA 4.71698
30 5AR0 GB8 4.71698
31 5UQW GDP 4.71698
32 3IWK NAD 4.71698
33 4RVU NDP 5.66038
34 2BFR ADP 5.66038
35 4GNI ATP 5.66038
36 3NTA FAD 5.66038
37 3I53 SAH 5.66038
38 1H5S TMP 5.66038
39 5HGZ ACO 5.66038
40 1UZN NAP 5.66038
41 3W6X HZP 5.66038
42 3RUV ANP 6.60377
43 2YG3 FAD 6.60377
44 4QED NAP 6.60377
45 1IBR GNP 6.60377
46 5JCA FAD 6.60377
47 4LGY ADP 6.60377
48 5FEU NAP 6.60377
49 1ZC3 GNP 6.60377
50 1EDO NAP 6.60377
51 3LM9 ADP 6.60377
52 1WMA NDP 7.54717
53 1WMA AB3 7.54717
54 2OBD PCW 7.54717
55 4CBX ATP 7.54717
56 2YNC YNC 7.54717
57 4YAC NAI 8.49057
58 1WD4 AHR 8.49057
59 3O26 NDP 8.49057
60 5TCI MLI 8.49057
61 1QPG MAP 8.49057
62 2Q97 ATP 9.43396
63 4PKG ATP 9.43396
64 3GJX GTP 9.43396
65 2D0O ADP 9.43396
66 1Q19 APC 9.43396
67 4PKI ATP 9.43396
68 4B1V ATP 9.43396
69 2A40 ATP 9.43396
70 5ZZB ATP 9.43396
71 4PL8 ATP 9.43396
72 1KXP ATP 9.43396
73 2FF3 ATP 9.43396
74 2D1K ATP 9.43396
75 2PAV ATP 9.43396
76 5LJW ANP 9.43396
77 4MIG G3F 10.3774
78 5ZZA ATP 10.3774
79 1XG5 NAP 11.3208
80 3FV3 IVA VAL VAL STA ALA STA 11.3208
81 2XYA 7L4 11.3208
82 5FUB SAH 11.3208
83 4YRY NAD 11.3208
84 4YRY FAD 11.3208
85 2GMH FAD 11.3208
86 3IES M24 11.3208
87 1ATL 0QI 11.3208
88 4H03 ATP 12.2642
89 1J2J GTP 12.2642
90 4X60 3XV 13.2075
91 4X60 SFG 13.2075
92 4YDU ADP 14.1509
93 5WDR GNP 15.0943
94 6D5L GNP 15.0943
95 6BVJ GNP 15.0943
96 3VPB ADP 15.0943
97 6BVI GNP 15.0943
98 6D56 GNP 15.0943
99 6D5E GNP 15.0943
100 6D59 GNP 15.0943
101 6D5J GNP 15.0943
102 6BVK GNP 15.0943
103 6D5M GNP 15.0943
104 6D5H GNP 15.0943
105 6BVM GNP 15.0943
106 6BVL GNP 15.0943
107 6D5V GNP 15.0943
108 2NVA PL2 16.0377
109 1P77 ATR 16.9811
110 3M1I GTP 16.9811
111 3GLC R5P 16.9811
112 2E2P ADP 16.9811
113 2OUA AES 18.8679
114 5UWO GNP 20.7547
115 5UWH GNP 20.7547
116 5UWW GNP 20.7547
117 5UWQ GNP 20.7547
118 5UWP GNP 20.7547
119 5DX0 SFG 24.5283
120 5DXA SFG 24.5283
121 5DX1 SFG 24.5283
122 2PBD ATP 30.2326
Pocket No.: 6; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 91
This union binding pocket(no: 6) in the query (biounit: 3kif.bio3) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 1QG6 NAD None
2 2DC1 NAD None
3 3GYQ SAM None
4 1HXD BTN 1.88679
5 3KEE 30B 1.88679
6 3SUD SUE 1.88679
7 5L53 NAP 2.83019
8 1OAA OAA 2.83019
9 2PXX SAH 2.83019
10 1DEK DGP 2.83019
11 1WY7 SAH 2.83019
12 2XVM SAH 3.77358
13 1QZZ SAM 3.77358
14 3GE7 AFQ 3.77358
15 4UCI SAM 3.77358
16 5XG5 A2G 3.77358
17 5H68 AGS 3.77358
18 2VAP GDP 3.77358
19 3AWJ COA 4.71698
20 5O4J PJL 4.71698
21 3DZ6 M8E 4.71698
22 1YZQ GNP 4.71698
23 3MCT SAH 4.71698
24 2XVE FAD 5.66038
25 1GPE FAD 5.66038
26 3NT6 FAD 5.66038
27 2H6T IVA VAL VAL STA ALA STA 5.66038
28 5WX3 COA 5.66038
29 4R0M FA5 5.66038
30 5KJK 6T1 5.66038
31 5KJK SAM 5.66038
32 2CDU FAD 5.66038
33 3ICC NAP 5.66038
34 4UUW AMP 5.66038
35 5O42 NAD 6.60377
36 5O42 9JW 6.60377
37 5O42 BGC 6.60377
38 5FFF 5XC 6.60377
39 3EMY IVA VAL VAL STA ALA STA 6.60377
40 1G0N NDP 6.60377
41 1G0N PHH 6.60377
42 5W8Q BU4 6.60377
43 1PVN MZP 6.60377
44 4UOX PLP PUT 6.60377
45 5GM1 SAH 6.60377
46 5VN0 FAD 7.54717
47 1T3Q FAD 7.54717
48 4PNE SAH 7.54717
49 5NMX FAD 7.54717
50 4F97 VDO 7.54717
51 4QGE 35O 7.54717
52 3SBD GNP 7.54717
53 2A5F GTP 7.54717
54 3D3W NAP 8.49057
55 1RP0 AHZ 8.49057
56 4HZO COA 8.49057
57 2QZX IVA VAL VAL STA ALA STA 8.49057
58 1PR9 NAP 8.49057
59 1PN4 HDC 8.49057
60 3ZTV ADN 8.49057
61 2V51 ATP 9.43396
62 3RJ5 NAD 9.43396
63 2AE2 NAP 9.43396
64 1EE0 CAA 9.43396
65 3SJH ATP 9.43396
66 4B1X ATP 9.43396
67 2FF6 ATP 9.43396
68 5YEE ATP 9.43396
69 2A3Z ATP 9.43396
70 4Z94 ATP 9.43396
71 1QO8 FAD 10.3774
72 5ZDN CDP 10.3774
73 1YAG ATP 10.3774
74 4ZAC 4LU 10.3774
75 5E72 SAM 10.3774
76 5GSN NAP 11.3208
77 5JJU AMP 11.3208
78 4JDR FAD 12.2642
79 2C29 DQH 12.2642
80 4H03 LAR 12.2642
81 1J5P NAD 13.2075
82 4HAT GNP 14.1509
83 3RYC GDP 14.1509
84 6D55 GNP 15.0943
85 6D5G GNP 15.0943
86 2QTV GNP 16.3265
87 3T7S SAM 16.9811
88 3FSJ D7K 27.3585
89 3FGZ BEF 28.3019
90 1FQJ ALF 38.6792
91 1FQK ALF 38.6792
Pocket No.: 7; Query (leader) PDB : 3KIF; Ligand: GDL; Similar sites found with APoc: 38
This union binding pocket(no: 7) in the query (biounit: 3kif.bio3) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 4J5R A1R