Receptor
PDB id Resolution Class Description Source Keywords
3IA4 1.7 Å EC: 1.5.1.3 MORITELLA PROFUNDA DIHYDROFOLATE REDUCTASE (DHFR) IN COMPLEX WITH NADPH AND METHOTREXATE (MTX) MORITELLA PROFUNDA DHFR DIHYDROFOLATE REDUCTASE NADPH METHOTREXATE OXIDOREDUCTASE
Ref.: ARE THE CATALYTIC PROPERTIES OF ENZYMES FROM PIEZOPHILIC ORGANISMS PRESSURE ADAPTED? CHEMBIOCHEM V. 10 2348 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MTX A:164;
B:164;
C:164;
D:164;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
454.439 C20 H22 N8 O5 CN(Cc...
NDP A:163;
B:163;
C:163;
D:163;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3IA4 1.7 Å EC: 1.5.1.3 MORITELLA PROFUNDA DIHYDROFOLATE REDUCTASE (DHFR) IN COMPLEX WITH NADPH AND METHOTREXATE (MTX) MORITELLA PROFUNDA DHFR DIHYDROFOLATE REDUCTASE NADPH METHOTREXATE OXIDOREDUCTASE
Ref.: ARE THE CATALYTIC PROPERTIES OF ENZYMES FROM PIEZOPHILIC ORGANISMS PRESSURE ADAPTED? CHEMBIOCHEM V. 10 2348 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 28 families.
1 3IA4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (71)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 22 families.
1 4QLG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 4RGC - FOL C19 H19 N7 O6 c1cc(ccc1C....
3 1RB2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 1RA9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 3QYL Ki = 1 uM 7ME C9 H14 N4 C[C@H]1CCc....
6 1RA1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
7 1RX6 - DDF C21 H25 N5 O6 c1cc(ccc1C....
8 1JOM - FFO C20 H23 N7 O7 c1cc(ccc1C....
9 2D0K Kd = 9.51 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
10 1DRA - MTX C20 H22 N8 O5 CN(Cc1cnc2....
11 1RC4 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
12 2ANQ ic50 = 0.075 uM C1A C14 H22 N8 S2 [H]/N=C(/N....
13 4PSY - FOL C19 H19 N7 O6 c1cc(ccc1C....
14 4KJJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
15 5CCC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
16 3QYO Ki = 7 uM Q24 C8 H8 N4 c1ccc2c(c1....
17 6DFR Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
18 4P68 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
19 1RX1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
20 1TDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
21 3OCH - 2MX C49 H62 N18 O8 CN(Cc1cnc2....
22 7DFR - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
23 4PSS - FOL C19 H19 N7 O6 c1cc(ccc1C....
24 2DRC Kd = 0.13 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
25 3R33 Ki = 0.8 uM 6ME C9 H14 N4 C[C@H]1CCc....
26 1RB3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
27 1DHI Kd = 55 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
28 1DYI - FOL C19 H19 N7 O6 c1cc(ccc1C....
29 1RA2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
30 4DFR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
31 4PST - FOL C19 H19 N7 O6 c1cc(ccc1C....
32 3DAU - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
33 4NX7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
34 3QL3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
35 4PTH - FOL C19 H19 N7 O6 c1cc(ccc1C....
36 4GH8 Kd = 2.6 uM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
37 4P3R - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
38 3QL0 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
39 4P66 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
40 5W3Q - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
41 5CC9 - DDF C21 H25 N5 O6 c1cc(ccc1C....
42 1DRB - MTX C20 H22 N8 O5 CN(Cc1cnc2....
43 1RG7 Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
44 1DDS - MTX C20 H22 N8 O5 CN(Cc1cnc2....
45 1DRH Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
46 4QLF - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
47 1RH3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
48 1RA8 - FOL C19 H19 N7 O6 c1cc(ccc1C....
49 1DHJ Kd = 281 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
50 4PTJ - FOL C19 H19 N7 O6 c1cc(ccc1C....
51 1RX3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
52 1DYH - DZF C20 H20 N6 O6 c1cc(ccc1C....
53 1RX9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
54 3DRC Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
55 1DDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
56 1JOL - FFO C20 H23 N7 O7 c1cc(ccc1C....
57 1RX4 - DDF C21 H25 N5 O6 c1cc(ccc1C....
58 1RA3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
59 4P3Q - FOL C19 H19 N7 O6 c1cc(ccc1C....
60 4KJK - FOL C19 H19 N7 O6 c1cc(ccc1C....
61 1RF7 - DHF C19 H21 N7 O6 c1cc(ccc1C....
62 1RX5 - DDF C21 H25 N5 O6 c1cc(ccc1C....
63 4QLE - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
64 1RX2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
65 1RX7 - FOL C19 H19 N7 O6 c1cc(ccc1C....
66 4NX6 - FOL C19 H19 N7 O6 c1cc(ccc1C....
67 1DYJ - DDF C21 H25 N5 O6 c1cc(ccc1C....
68 4KJL - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
69 3IA4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70 4OR7 ic50 = 23 nM 25U C19 H18 N6 CCc1c(c(nc....
71 5DXV - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (233)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 12 families.
1 2FZJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 3K47 ic50 = 14.5 uM D09 C16 H16 N4 O2 C/C(=Cc1co....
3 3D80 - Q22 C21 H19 N7 O c1cc2c(cc1....
4 3D84 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 3K45 ic50 = 3.9 uM 51P C16 H16 N4 O2 C/C(=C/c1c....
6 1U70 Ki = 230 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
7 4QJC ic50 = 0.15 uM IXE C14 H11 F3 N6 CN(c1cc(c(....
8 4QHV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
9 2C2S ic50 = 0.15 uM 34B C8 H20 B10 N4 [BH]1234[B....
10 1U71 - MXA C17 H19 N5 O2 Cc1c(cnc2c....
11 4G95 Ki = 24.4 nM OAG C14 H12 Cl2 N6 c1cc(c(cc1....
12 1OHJ - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
13 3NZD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
14 3GHV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
15 3NXV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
16 1PD9 - CO4 C19 H24 N6 O3 Cc1c(cnc2c....
17 3NXX Ki = 11 uM D2D C19 H22 N4 O2 CC(C)C/C(=....
18 1DHF Kd = 0.111 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
19 3F8Y Ki = 8.3 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
20 3GYF ic50 = 12.3 nM 51P C16 H16 N4 O2 C/C(=C/c1c....
21 4KFJ ic50 = 60 nM 1R0 C25 H23 N5 O CCc1c(c(nc....
22 3S7A - 684 C25 H23 N7 O3 c1ccc2c(c1....
23 4M6K - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
24 4KAK ic50 = 1300 nM 06U C22 H23 N5 O CCc1c(c(nc....
25 1MVT - DTM C18 H22 N6 O3 CN(Cc1cc(c....
26 1DRF Kd = 0.111 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
27 1PD8 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
28 1S3V - TQD C19 H29 N5 O3 CN(CC1CCC2....
29 3NXT - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
30 3NU0 ic50 = 0.1 uM 3TU C24 H21 N5 O6 S c1cc(c2c(c....
31 4KEB ic50 = 45 nM 1QZ C26 H25 N5 O CCc1c(c(nc....
32 1BOZ ic50 = 8500 nM PRD C17 H20 N6 O2 C[N@](Cc1c....
33 1DLR Ki = 16.4 nM MXA C17 H19 N5 O2 Cc1c(cnc2c....
34 3GHW Kd = 0.02 uM GHW C19 H18 N4 O6 S2 Cc1c(c2c(s....
35 1HFR Ki = 790 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
36 4M6J - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
37 3F91 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
38 3NXO Ki = 0.83 uM D2B C18 H20 N4 O2 CC(C)/C(=C....
39 4DDR Ki = 2841 nM MMV C18 H24 N4 O4 CCc1c(c(nc....
40 3NXY - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
41 3F8Z Ki = 66 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
42 3S3V Ki = 593 nM TOP C14 H18 N4 O3 COc1cc(cc(....
43 1U72 Kd = 0.0034 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
44 4M6L - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
45 1DLS Ki = 10.9 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
46 1KMV - LII C18 H19 N5 O2 Cc1c(cnc2c....
47 1MVS - DTM C18 H22 N6 O3 CN(Cc1cc(c....
48 4KBN ic50 = 330 nM 25U C19 H18 N6 CCc1c(c(nc....
49 3NXR Ki = 11 uM D2D C19 H22 N4 O2 CC(C)C/C(=....
50 1S3W - TQT C17 H33 N5 C1CCC2C(C1....
51 3NTZ ic50 = 0.09 uM 3TZ C23 H21 N5 O6 S c1cc(c2c(c....
52 3GHC - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
53 1HFP Ki = 1036 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
54 2C2T ic50 = 15 uM 39B C8 H20 B9 N4 [H]1[BH]2[....
55 3GI2 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
56 2DHF - DZF C20 H20 N6 O6 c1cc(ccc1C....
57 1OHK - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
58 1HFQ Ki = 2.7 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
59 1S3U - TQD C19 H29 N5 O3 CN(CC1CCC2....
60 3N0H Ki = 617 nM TOP C14 H18 N4 O3 COc1cc(cc(....
61 3EIG Ki = 21 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
62 1KMS - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
63 3FS6 Ki = 230 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
64 3FQO ic50 = 0.67 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
65 3SRU Ki = 0.02 nM Q26 C23 H23 N5 O3 S CCOc1ccc(c....
66 3FY9 Ki = 3.5 nM XCF C19 H22 N4 O3 COc1cc(c2c....
67 4LEK Ki = 0.16 nM 1DN C20 H17 N7 O2 S COc1cc2c(c....
68 4TU5 ic50 = 18 nM 06W C22 H23 N5 O CCc1c(c(nc....
69 2W9G Kd = 8.1 nM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70 3SRQ Ki = 0.48 nM Q19 C17 H16 N4 O Cc1cc2c(cc....
71 4LAG Ki = 0.011 nM 1VN C20 H16 Cl N7 S Cc1cc2c(cc....
72 3M08 Ki = 2.8 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
73 3FYW Ki = 0.23 nM I2H C19 H22 N4 O3 COc1cc(c2c....
74 3FRD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
75 3F0Q Ki = 10 nM 52V C24 H26 N4 O Cc1cccc(c1....
76 2W9H Kd = 430 nM TOP C14 H18 N4 O3 COc1cc(cc(....
77 4LAE Ki = 0.002 nM 1VM C20 H17 N7 S Cc1cc2c(cc....
78 3FYV Ki = 0.22 nM XCF C19 H22 N4 O3 COc1cc(c2c....
79 3F0U ic50 = 0.19 uM 53R C22 H22 N4 O Cc1c(c(nc(....
80 3FQ0 ic50 = 0.068 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
81 3FQF ic50 = 0.75 uM 55V C19 H24 N4 O3 Cc1c(c(nc(....
82 3SRS Ki = 0.76 nM M23 C17 H17 Br N4 O CCOc1ccc(c....
83 3F0B ic50 = 0.061 uM 53R C22 H22 N4 O Cc1c(c(nc(....
84 3FRA Ka = 76000000 M^-1 I2H C19 H22 N4 O3 COc1cc(c2c....
85 5ISQ Ki = 158.3 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
86 3FRB Ka = 5800000 M^-1 TOP C14 H18 N4 O3 COc1cc(cc(....
87 3SRR Ki = 0.24 nM Q20 C18 H18 N4 O2 CCOc1ccc(c....
88 5JG0 ic50 = 0.01 uM UC9 C24 H22 N4 O4 CCc1c(c(nc....
89 3FQV ic50 = 0.77 uM 11F C22 H22 N4 O Cc1c(c(nc(....
90 5ISP Ki = 11.75 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
91 4LAH Ki = 0.096 nM 1VO C20 H17 N7 S Cc1cc2c(cc....
92 3SRW Ki = 0.026 nM Q27 C21 H20 N4 O CCOc1ccc2c....
93 3I8A Ki = 0.12 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
94 3M09 Ki = 0.9 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
95 4FGG Ki = 4.1 nM 0U5 C31 H36 N6 O3 CCCc1c(c(n....
96 3FRE Ki = 0.0006 uM TOP C14 H18 N4 O3 COc1cc(cc(....
97 5IST Ki = 3.89 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
98 3FY8 Ki = 0.9 nM I2H C19 H22 N4 O3 COc1cc(c2c....
99 3SR5 Ki = 0.35 nM Q12 C17 H18 N4 O2 Cc1cc2c(cc....
100 1RA9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
101 3QYL Ki = 1 uM 7ME C9 H14 N4 C[C@H]1CCc....
102 1RA1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
103 1RX6 - DDF C21 H25 N5 O6 c1cc(ccc1C....
104 1JOM - FFO C20 H23 N7 O7 c1cc(ccc1C....
105 2D0K Kd = 9.51 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
106 1DRA - MTX C20 H22 N8 O5 CN(Cc1cnc2....
107 1RC4 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
108 2ANQ ic50 = 0.075 uM C1A C14 H22 N8 S2 [H]/N=C(/N....
109 4PSY - FOL C19 H19 N7 O6 c1cc(ccc1C....
110 4KJJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
111 5CCC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
112 3QYO Ki = 7 uM Q24 C8 H8 N4 c1ccc2c(c1....
113 6DFR Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
114 4P68 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
115 1RX1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
116 1TDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
117 3OCH - 2MX C49 H62 N18 O8 CN(Cc1cnc2....
118 7DFR - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
119 4PSS - FOL C19 H19 N7 O6 c1cc(ccc1C....
120 2DRC Kd = 0.13 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
121 3R33 Ki = 0.8 uM 6ME C9 H14 N4 C[C@H]1CCc....
122 1RB3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
123 1DHI Kd = 55 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
124 1DYI - FOL C19 H19 N7 O6 c1cc(ccc1C....
125 1RA2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
126 4DFR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
127 4PST - FOL C19 H19 N7 O6 c1cc(ccc1C....
128 3DAU - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
129 4NX7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
130 3QL3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
131 4PTH - FOL C19 H19 N7 O6 c1cc(ccc1C....
132 4GH8 Kd = 2.6 uM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
133 4P3R - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
134 3QL0 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
135 4P66 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
136 1RG7 Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
137 1DDS - MTX C20 H22 N8 O5 CN(Cc1cnc2....
138 1DRH Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
139 4QLF - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
140 1RH3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
141 1RA8 - FOL C19 H19 N7 O6 c1cc(ccc1C....
142 1DHJ Kd = 281 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
143 4PTJ - FOL C19 H19 N7 O6 c1cc(ccc1C....
144 1RX3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
145 1DYH - DZF C20 H20 N6 O6 c1cc(ccc1C....
146 1RX9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
147 3DRC Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
148 1DDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
149 1JOL - FFO C20 H23 N7 O7 c1cc(ccc1C....
150 1RX4 - DDF C21 H25 N5 O6 c1cc(ccc1C....
151 1RA3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
152 4P3Q - FOL C19 H19 N7 O6 c1cc(ccc1C....
153 4KJK - FOL C19 H19 N7 O6 c1cc(ccc1C....
154 1RF7 - DHF C19 H21 N7 O6 c1cc(ccc1C....
155 1RX5 - DDF C21 H25 N5 O6 c1cc(ccc1C....
156 4QLE - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
157 1RX2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
158 1RX7 - FOL C19 H19 N7 O6 c1cc(ccc1C....
159 4NX6 - FOL C19 H19 N7 O6 c1cc(ccc1C....
160 1DYJ - DDF C21 H25 N5 O6 c1cc(ccc1C....
161 4KJL - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
162 3IX9 Ki = 3.9 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
163 3DFR ic50 = 3 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
164 4H97 ic50 = 22 nM 53S C23 H24 N4 O Cc1ccc(cc1....
165 1M79 ic50 = 320 nM MQ1 C15 H14 N4 O2 COc1ccc(cc....
166 3QLR ic50 = 45 nM QLR C19 H24 N4 O3 CC[C@@H](C....
167 1AOE Ki = 0.22 nM GW3 C15 H19 N5 CCC(CC)n1c....
168 1IA3 ic50 = 8 nM TQ5 C18 H20 N4 S CC(C)(C)c1....
169 4HOF ic50 = 20 nM 18H C22 H22 N4 O Cc1c(c(nc(....
170 3QLW ic50 = 100 nM N22 C17 H20 N4 O2 CCc1c(c(nc....
171 1IA1 ic50 = 0.034 uM TQ3 C14 H12 N4 S c1ccc(cc1)....
172 3QLS ic50 = 33 nM 55V C19 H24 N4 O3 Cc1c(c(nc(....
173 1AI9 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
174 1IA4 ic50 = 0.13 uM TQ6 C18 H19 N5 O S c1cc2c(c(c....
175 4HOE ic50 = 36 nM 18G C23 H24 N4 O2 Cc1c(c(nc(....
176 1M7A ic50 = 9 nM MQU C15 H19 N5 O2 COCC(COC)n....
177 1M78 ic50 = 52 nM CLZ C8 H8 Cl N5 O2 c1cc2c(c(c....
178 1IA2 ic50 = 0.023 uM TQ4 C15 H14 N4 S Cc1ccc(cc1....
179 3EEL ic50 = 0.55 nM 53T C24 H26 N4 O Cc1cc(cc(c....
180 3QLZ ic50 = 15 nM QLZ C18 H22 N4 O2 CCCc1c(c(n....
181 3EEK ic50 = 0.61 nM 53S C23 H24 N4 O Cc1ccc(cc1....
182 3CSE ic50 = 8.2 nM N22 C17 H20 N4 O2 CCc1c(c(nc....
183 3QLX ic50 = 27 nM QLR C19 H24 N4 O3 CC[C@@H](C....
184 3EEJ ic50 = 7.3 nM 53R C22 H22 N4 O Cc1c(c(nc(....
185 3EEM ic50 = 5.5 nM 53V C24 H26 N4 O Cc1cccc(c1....
186 4HOG ic50 = 5.5 nM 18H C22 H22 N4 O Cc1c(c(nc(....
187 3IA4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
188 1DR6 - HBI C9 H13 N5 O3 C[C@@H]([C....
189 1DR1 - HBI C9 H13 N5 O3 C[C@@H]([C....
190 1DR3 - HBI C9 H13 N5 O3 C[C@@H]([C....
191 1DR4 - HBI C9 H13 N5 O3 C[C@@H]([C....
192 1DR7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
193 1DR2 - TAP C21 H28 N7 O16 P3 S c1cc(c[n+]....
194 1DR5 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
195 8DFR - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
196 4ELG Ki = 6.9 nM 52J C28 H32 N6 O3 CC(C)C[C@H....
197 3DAT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
198 3E0B ic50 = 0.89 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
199 2QK8 ic50 ~ 20 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
200 4ELE Ki = 13.4 nM 31I C27 H30 N6 O3 CC(C)[C@H]....
201 4ELH Ki = 8.2 nM 53I C28 H30 N6 O3 CC(=C[C@@H....
202 3FL8 ic50 = 54 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
203 4ELF Ki = 9.4 nM 35I C27 H27 F3 N6 O3 COc1cc(cc(....
204 3FL9 ic50 = 77 mM TOP C14 H18 N4 O3 COc1cc(cc(....
205 1S3Y ic50 = 210 nM TQT C17 H33 N5 C1CCC2C(C1....
206 4IXG ic50 = 0.076 uM IXG C14 H14 N6 CN(c1ccccc....
207 2FZH ic50 = 0.049 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
208 4CD2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
209 3NZC - D2O C24 H25 N5 O2 Cc1c(cnc2c....
210 3NZA - D2K C22 H27 N5 O4 CCOC(=O)CC....
211 4G8Z Ki = 227 nM TOP C14 H18 N4 O3 COc1cc(cc(....
212 3NZ6 ic50 = 1.3 nM D2J C22 H27 N5 O4 Cc1c(cnc2c....
213 1CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
214 3NZB ic50 = 35 nM D2N C24 H31 N5 O4 CCOC(=O)CC....
215 3NZ9 ic50 = 6.5 nM D2K C22 H27 N5 O4 CCOC(=O)CC....
216 1DYR ic50 = 20 uM TOP C14 H18 N4 O3 COc1cc(cc(....
217 3TD8 ic50 = 1.2 nM D2R C22 H23 N5 O3 Cc1c(cnc2c....
218 1LY3 ic50 = 87 nM COG C18 H21 N5 O2 CN(Cc1cc(c....
219 3CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
220 1VJ3 ic50 = 0.17 uM TAB C23 H26 Cl N7 O2 CCc1c(c(nc....
221 1E26 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
222 1DAJ Ki = 6.5 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
223 2FZI ic50 = 1 nM DH3 C19 H22 N4 O4 COc1cc(cc(....
224 4IXE - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
225 1KLK ic50 = 0.21 uM PMD C21 H17 N7 c1ccc2c(c1....
226 2CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
227 4IXF - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
228 1LY4 ic50 = 76 nM COQ C17 H20 N6 O2 CN(Cc1cc(c....
229 4M7V Ki = 4.5 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
230 4M7U - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
231 2W9S Kd = 2370 nM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
232 4OR7 ic50 = 23 nM 25U C19 H18 N6 CCc1c(c(nc....
233 5DXV - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MTX; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 MTX 1 1
2 3BI 0.783505 0.884058
3 2MX 0.778947 0.924242
4 04J 0.663043 0.870968
5 MT1 0.632653 0.968254
6 MOT 0.534653 0.923077
7 COP 0.453782 0.815385
8 FOL 0.410714 0.779412
Ligand no: 2; Ligand: NDP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 DG1 0.68 1
8 1DG 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 2AM 0.529412 0.87013
23 6V0 0.519685 0.974026
24 NAP 0.514493 0.922078
25 EAD 0.507143 0.949367
26 A2D 0.504673 0.921053
27 TXE 0.503876 0.935897
28 NA0 0.496454 0.910256
29 TXD 0.496124 0.911392
30 SAP 0.495575 0.875
31 AGS 0.495575 0.875
32 P1H 0.493056 0.925926
33 CO7 0.489796 0.791209
34 TAP 0.489362 0.864198
35 PAP 0.482456 0.907895
36 BA3 0.481818 0.921053
37 NAJ PZO 0.478261 0.924051
38 ATP 0.477876 0.921053
39 B4P 0.477477 0.921053
40 ADP 0.477477 0.921053
41 AP5 0.477477 0.921053
42 OAD 0.47541 0.897436
43 5FA 0.473684 0.921053
44 AR6 0.473684 0.896104
45 APR 0.473684 0.896104
46 AQP 0.473684 0.921053
47 AN2 0.473214 0.909091
48 3OD 0.467742 0.897436
49 50T 0.464912 0.884615
50 PO4 PO4 A A A A PO4 0.463415 0.857143
51 V3L 0.461538 0.896104
52 2A5 0.46087 0.85
53 A1R 0.459016 0.841463
54 ADQ 0.459016 0.897436
55 4AD 0.459016 0.875
56 OVE 0.458716 0.8375
57 OMR 0.458647 0.813953
58 PPS 0.457627 0.811765
59 AD9 0.456897 0.897436
60 CA0 0.45614 0.897436
61 M33 0.45614 0.884615
62 ADJ 0.455882 0.879518
63 A3P 0.455357 0.894737
64 ACP 0.452174 0.897436
65 ENP 0.451613 0.85
66 UP5 0.451128 0.948052
67 SRP 0.45 0.8625
68 ANP 0.449153 0.897436
69 ACQ 0.449153 0.897436
70 PRX 0.448276 0.82716
71 5AL 0.445378 0.884615
72 7D4 0.443478 0.8375
73 ADX 0.443478 0.811765
74 AMP 0.436364 0.894737
75 A 0.436364 0.894737
76 4TC 0.433824 0.924051
77 7D3 0.433628 0.8375
78 ETB 0.433566 0.797753
79 DCA 0.433566 0.788889
80 1ZZ 0.433071 0.802326
81 BIS 0.433071 0.864198
82 00A 0.432 0.864198
83 ATF 0.429752 0.886076
84 0T1 0.427586 0.788889
85 5SV 0.427419 0.788235
86 8QN 0.427419 0.884615
87 3AM 0.427273 0.857143
88 N01 0.426573 0.884615
89 PR8 0.425197 0.811765
90 WAQ 0.425197 0.841463
91 LAD 0.425197 0.821429
92 DTP 0.425 0.8375
93 AMO 0.424 0.886076
94 PAJ 0.424 0.843373
95 APC 0.423729 0.886076
96 UPA 0.423358 0.935897
97 48N 0.422222 0.853659
98 FYA 0.421875 0.860759
99 PTJ 0.421875 0.853659
100 CNA 0.421429 0.910256
101 PUA 0.42069 0.9125
102 NXX 0.419118 0.910256
103 DND 0.419118 0.910256
104 AV2 0.418033 0.848101
105 COA 0.417808 0.788889
106 3UK 0.417323 0.897436
107 OOB 0.416 0.909091
108 IVC 0.415584 0.78022
109 DAT 0.415254 0.8375
110 NDO 0.414966 0.897436
111 139 0.414286 0.901235
112 3AT 0.413223 0.896104
113 TAT 0.413223 0.886076
114 YLB 0.413043 0.784091
115 62F 0.4125 0.823529
116 ABM 0.412281 0.848101
117 YAP 0.412214 0.875
118 YLP 0.411765 0.784091
119 ME8 0.410853 0.802326
120 NB8 0.410853 0.853659
121 SON 0.410256 0.886076
122 DLL 0.409449 0.909091
123 AHX 0.409449 0.853659
124 COS 0.409396 0.771739
125 AMX 0.409396 0.797753
126 CAO 0.409396 0.763441
127 30N 0.409396 0.72449
128 7D5 0.409091 0.8125
129 4UW 0.408759 0.9125
130 APX 0.407692 0.841463
131 SRA 0.40708 0.85
132 CMX 0.406667 0.788889
133 SCO 0.406667 0.788889
134 TYM 0.405797 0.886076
135 COD 0.405594 0.777778
136 OXK 0.405229 0.771739
137 CA6 0.405229 0.70297
138 A12 0.405172 0.886076
139 AP2 0.405172 0.886076
140 9SN 0.40458 0.853659
141 LAQ 0.404412 0.802326
142 T5A 0.404255 0.914634
143 FAM 0.403974 0.771739
144 ACO 0.403974 0.763441
145 FCX 0.403974 0.763441
146 AMP MG 0.403509 0.825
147 VO4 ADP 0.403226 0.860759
148 ADP VO4 0.403226 0.860759
149 YLC 0.402878 0.823529
150 1VU 0.402597 0.763441
151 FA5 0.401515 0.886076
152 HAX 0.401316 0.771739
153 APU 0.4 0.923077
154 TXA 0.4 0.886076
155 A U 0.4 0.898734
156 4UU 0.4 0.948052
157 AFH 0.4 0.843373
158 CAJ 0.4 0.771739
159 AR6 AR6 0.4 0.871795
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3IA4; Ligand: NDP; Similar sites found: 31
This union binding pocket(no: 1) in the query (biounit: 3ia4.bio1) has 32 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3KPE TM3 0.0399 0.4037 None
2 2VZ6 FEF 0.02203 0.4072 2.46914
3 1FNZ A2G 0.04608 0.40585 2.46914
4 1M2Z BOG 0.02848 0.41686 3.08642
5 1NPD NAD 0.006412 0.40353 3.08642
6 1GXU 2HP 0.04727 0.41885 3.2967
7 5FJJ MAN 0.005236 0.44634 3.7037
8 2NCD ADP 0.03165 0.41331 3.7037
9 2YVK MRU 0.01203 0.40955 3.7037
10 2F2U M77 0.02399 0.409 3.7037
11 2B6N ALA PRO THR 0.0231 0.40646 3.7037
12 4RL4 PPV 0.03276 0.42279 4.32099
13 3KYG 5GP 5GP 0.02133 0.40108 4.32099
14 3CV2 COA 0.006946 0.45554 4.93827
15 3JUC PCA 0.04059 0.40607 5.22876
16 3ZPG 5GP 0.007868 0.40594 5.55556
17 2VOH CIT 0.02641 0.41172 6.36943
18 1T9D P22 0.01431 0.42909 6.79012
19 5BXV MGP 0.02038 0.42402 7.40741
20 3FIU POP 0.03572 0.41391 7.40741
21 2QV7 ADP 0.007919 0.42157 8.02469
22 3KYF 5GP 5GP 0.01549 0.4187 8.64198
23 1D8C GLV 0.03511 0.41204 9.25926
24 2FYF PLP 0.01929 0.41784 9.87654
25 2J5V PCA 0.03163 0.41984 11.1111
26 3NHB ADP 0.02914 0.41456 11.1111
27 1WUW TSU 0.02132 0.42766 13.3333
28 4BQS K2Q 0.0358 0.40374 20.3704
29 4HA9 NDP 0.00000001665 0.54768 23.4568
30 3NRR D16 0.00000000000009126 0.83167 46.2963
31 3NRR NAP 0.00000000000008571 0.82359 46.2963
Pocket No.: 2; Query (leader) PDB : 3IA4; Ligand: MTX; Similar sites found: 65
This union binding pocket(no: 2) in the query (biounit: 3ia4.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1R2Q GNP 0.01792 0.41038 None
2 2RKN LP3 0.007348 0.40391 None
3 3IX8 TX3 0.01262 0.40894 1.23457
4 3WYJ H78 0.02461 0.42519 1.85185
5 4H07 IPH 0.01477 0.40972 1.94805
6 3KMZ EQO 0.004331 0.43252 2.46914
7 1XAP TTB 0.0102 0.40532 2.46914
8 3TDC 0EU 0.0001155 0.50557 3.08642
9 2QE4 JJ3 0.002421 0.46934 3.08642
10 2BJ4 OHT 0.001157 0.44905 3.08642
11 3FUR Z12 0.005052 0.44874 3.08642
12 5K8V 6RE 0.01611 0.43022 3.08642
13 3P0K FAD 0.003918 0.42819 3.08642
14 3B1M KRC 0.007657 0.41287 3.08642
15 4MGB XDH 0.00929 0.40346 3.08642
16 3L9R L9Q 0.006393 0.43229 3.7037
17 4OIV XX9 0.009082 0.43025 3.7037
18 1H9G COA MYR 0.005886 0.42617 3.7037
19 2Q2Y MKR 0.04099 0.41888 3.7037
20 2Q2Y ADP 0.04099 0.41888 3.7037
21 4RW3 SHV 0.02806 0.41342 3.7037
22 3UST FAD 0.006513 0.40845 3.7037
23 3T58 FAD 0.01577 0.40834 3.7037
24 1W5T ANP 0.01201 0.40204 3.7037
25 1DKF BMS 0.006811 0.41695 4.32099
26 3V49 PK0 0.00995 0.41238 4.32099
27 2E2R 2OH 0.004539 0.44074 4.93827
28 1PVS 7HP 0.009144 0.43926 4.93827
29 3B6C SDN 0.0004538 0.43228 4.93827
30 5L2J 6UL 0.02361 0.42614 4.93827
31 5L2J 70E 0.02487 0.42614 4.93827
32 1RYD GLC 0.01331 0.4067 4.93827
33 1EWF PC1 0.03635 0.40107 4.93827
34 3G5N PB2 0.03286 0.42506 5.55556
35 5IUB CLR 0.02733 0.40135 5.55556
36 3B96 MYA 0.01271 0.40089 5.55556
37 4G8R 96P 0.02399 0.40033 5.55556
38 4OPC PGT 0.0152 0.45348 6.17284
39 4OPC FDA 0.01535 0.45036 6.17284
40 4P6X HCY 0.02539 0.40184 6.17284
41 5DKK FMN 0.009895 0.40594 6.2069
42 4MNS 2AX 0.04331 0.40294 6.28931
43 1I1D COA 0.007957 0.41541 6.8323
44 1I1D 16G 0.02323 0.40259 6.8323
45 4UA3 COA 0.003607 0.42624 7.40741
46 4HIA FMN 0.006763 0.43226 7.95455
47 4M0R 644 0.008182 0.43638 8.02469
48 1D2N ANP 0.01175 0.40247 8.02469
49 5LXT 7AK 0.03981 0.42337 8.64198
50 5LXT GDP 0.04134 0.42337 8.64198
51 3KDU NKS 0.002761 0.46381 9.25926
52 4QRH 0O2 0.01261 0.40106 9.25926
53 3MX2 TTP 0.004694 0.41492 9.87654
54 2VEZ G6P 0.01877 0.40591 9.87654
55 2VEZ ACO 0.01773 0.40588 9.87654
56 3SXN COA 0.007746 0.41264 10.4938
57 4QJL COA 0.01228 0.40806 11.1111
58 3F3E LEU 0.03315 0.40123 11.7284
59 5G5W R8C 0.00595 0.42595 13.5802
60 1NHZ 486 0.01073 0.4077 14.1975
61 4UCC ZKW 0.002139 0.46246 14.8148
62 1SR7 MOF 0.01366 0.41384 16.6667
63 4QJK COA 0.005526 0.42446 17.9012
64 3NRR D16 0.000000002266 0.77137 46.2963
65 3NRR NAP 0.000000005634 0.7447 46.2963
Pocket No.: 3; Query (leader) PDB : 3IA4; Ligand: NDP; Similar sites found: 6
This union binding pocket(no: 3) in the query (biounit: 3ia4.bio3) has 30 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1TV5 N8E 0.04646 0.40726 3.08642
2 3R4S SIA 0.04695 0.40352 5.55556
3 1LL2 UPG 0.01002 0.40126 6.17284
4 4UP4 NDG 0.01953 0.40931 6.79012
5 5LXT 7AK 0.02704 0.40227 8.64198
6 1NF8 BOG 0.03372 0.41142 9.25926
Pocket No.: 4; Query (leader) PDB : 3IA4; Ligand: MTX; Similar sites found: 12
This union binding pocket(no: 4) in the query (biounit: 3ia4.bio3) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4AG9 COA 0.00471 0.40254 None
2 5AAV GW5 0.007446 0.44678 3.08642
3 3GUZ PAF 0.01487 0.40443 3.08642
4 3EWK FAD 0.01211 0.40007 3.7037
5 4OAS 2SW 0.01699 0.40802 4.16667
6 2Z7I 742 0.04377 0.41365 4.32099
7 4MKF AP5 0.02234 0.41171 4.60829
8 4CJX NAP 0.01688 0.40291 4.93827
9 2ZPA ACO 0.01279 0.40413 5.55556
10 2W90 6PG 0.01773 0.40048 5.55556
11 5BVE 4VG 0.04876 0.40707 7.40741
12 2I0G I0G 0.02171 0.41989 15.4321
Pocket No.: 5; Query (leader) PDB : 3IA4; Ligand: NDP; Similar sites found: 3
This union binding pocket(no: 5) in the query (biounit: 3ia4.bio4) has 30 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2WMC MGP 0.04973 0.40172 None
2 3FHR P4O 0.004587 0.42273 7.40741
3 1GOJ ADP 0.01048 0.44032 10.4938
Pocket No.: 6; Query (leader) PDB : 3IA4; Ligand: MTX; Similar sites found: 12
This union binding pocket(no: 6) in the query (biounit: 3ia4.bio4) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5IF4 6AK 0.01355 0.41394 None
2 3QCQ 3Q0 0.04531 0.42252 2.46914
3 5TWO 7MV 0.009633 0.41036 3.08642
4 2PRG BRL 0.01089 0.40412 3.08642
5 1T8U UAP SGN IDS SGN 0.03748 0.40271 5.55556
6 3WV1 WHH 0.0442 0.40164 5.55556
7 5MES 7LT 0.00689 0.40692 6.17284
8 3KFC 61X 0.02636 0.40213 6.17284
9 1XRO LEU 0.02883 0.40462 6.79012
10 5IR4 ZPE 0.01555 0.4251 8.64198
11 1FM9 570 0.0194 0.40877 9.25926
12 5G41 AP5 0.02415 0.41698 9.87654
Pocket No.: 7; Query (leader) PDB : 3IA4; Ligand: MTX; Similar sites found: 4
This union binding pocket(no: 7) in the query (biounit: 3ia4.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3G9E RO7 0.02669 0.40525 3.08642
2 5UI2 EQ3 0.03101 0.40196 3.7037
3 4MRT COA 0.02147 0.40002 6.66667
4 5HGR 45D 0.0259 0.40698 8.64198
Pocket No.: 8; Query (leader) PDB : 3IA4; Ligand: NDP; Similar sites found: 3
This union binding pocket(no: 8) in the query (biounit: 3ia4.bio2) has 30 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3TDC 0EU 0.008569 0.40402 3.08642
2 2WPF WPF 0.03512 0.40193 14.8148
3 2WPF FAD 0.03589 0.40029 14.8148
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