-->
Receptor
PDB id Resolution Class Description Source Keywords
3GLC 2.5 Å EC: 4.1.2.- CRYSTAL STRUCTURE OF E. COLI LSRF IN COMPLEX WITH RIBOSE-5-P ESCHERICHIA COLI TIM BARREL LYASE SCHIFF BASE
Ref.: THE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI AUTOI PROCESSING PROTEIN LSRF. PLOS ONE V. 4 E6820 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
R5P A:400;
B:400;
C:400;
D:400;
E:400;
F:400;
G:400;
H:400;
I:400;
J:400;
K:400;
L:400;
M:400;
N:400;
O:400;
P:400;
Q:400;
R:400;
S:400;
T:400;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
230.11 C5 H11 O8 P C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GLC 2.5 Å EC: 4.1.2.- CRYSTAL STRUCTURE OF E. COLI LSRF IN COMPLEX WITH RIBOSE-5-P ESCHERICHIA COLI TIM BARREL LYASE SCHIFF BASE
Ref.: THE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI AUTOI PROCESSING PROTEIN LSRF. PLOS ONE V. 4 E6820 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3GLC - R5P C5 H11 O8 P C(C(C(C(C=....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3GLC - R5P C5 H11 O8 P C(C(C(C(C=....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3GLC - R5P C5 H11 O8 P C(C(C(C(C=....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: R5P; Similar ligands found: 44
No: Ligand ECFP6 Tc MDL keys Tc
1 R5P 1 1
2 R52 1 1
3 G6Q 0.722222 1
4 E4P 0.647059 0.939394
5 M2P 0.606061 0.941176
6 GOS 0.606061 0.941176
7 A5P 0.540541 0.861111
8 DX5 0.540541 0.861111
9 LXP 0.540541 0.861111
10 LX1 0.540541 0.885714
11 S6P 0.526316 0.885714
12 LG6 0.5 0.970588
13 HG3 0.5 0.852941
14 DG6 0.5 0.837838
15 6PG 0.5 0.970588
16 TX4 0.5 0.673913
17 R10 0.487805 0.970588
18 PA5 0.487805 0.970588
19 LRY 0.479167 0.767442
20 AGP 0.47619 0.72093
21 M6R 0.47619 0.72093
22 TG6 0.465116 0.942857
23 F6R 0.465116 0.942857
24 G3H 0.459459 0.909091
25 FQ8 0.454545 0.888889
26 H4P 0.446809 0.744186
27 2FP 0.444444 0.970588
28 PAN 0.444444 0.717391
29 P6F 0.444444 0.970588
30 I22 0.444444 0.942857
31 P6T 0.444444 0.970588
32 KD0 0.434783 0.970588
33 9C2 0.434783 0.702128
34 5SP 0.418605 0.916667
35 5RP 0.418605 0.916667
36 HMS 0.418605 0.916667
37 52L 0.416667 0.733333
38 DEZ 0.414634 0.970588
39 DER 0.414634 0.970588
40 PAI 0.411765 0.727273
41 G3P 0.405405 0.828571
42 1GP 0.405405 0.828571
43 DXP 0.404762 0.885714
44 XDP 0.4 0.888889
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 221
This union binding pocket(no: 1) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1IIM TTP 1.0274
2 2C6Q NDP 1.35593
3 2C6Q IMP 1.35593
4 4LH7 1X8 1.35593
5 4XP7 FNR 1.69492
6 4KXL 6C6 1.97368
7 3LL5 IP8 2.00803
8 4PIV NDP 2.0339
9 5WGR FAD 2.0339
10 4WZ8 3W7 2.0339
11 3OIX FMN 2.0339
12 3SJU NDP 2.15054
13 4IGH FMN 2.37288
14 4IGH 1EA 2.37288
15 4IGH ORO 2.37288
16 5XFV FMN 2.37288
17 4ORM FMN 2.37288
18 4ORM 2V6 2.37288
19 4ORM ORO 2.37288
20 1TV5 FMN 2.37288
21 2GJN NIS 2.37288
22 4V15 PLP 2.37288
23 5FAG PPI 2.37288
24 2GJN FMN 2.37288
25 2RHQ GAX 2.38095
26 4ITH RCM 2.38095
27 2Y88 2ER 2.45902
28 5O0B 9FE 2.46914
29 6BKA FMN 2.71186
30 2NVA PL2 2.71186
31 4LUT DCS 2.71186
32 5T79 NDP 2.71186
33 4RD0 GDP 2.71186
34 3GAY P6T 2.71186
35 2FLI DX5 2.72727
36 3RJ5 NAD 2.75591
37 5XG5 A2G 2.75862
38 5TO8 7FM 2.83688
39 3ZV6 4HB 2.84698
40 3ZV6 NAD 2.84698
41 5TCI MLI 2.89855
42 1FDJ 13P 3.05085
43 1FDJ 2FP 3.05085
44 5AHN IMP 3.05085
45 1UUO ORO 3.05085
46 1UUO FMN 3.05085
47 1UUO BRF 3.05085
48 2Z6J FMN 3.05085
49 4HKP 16B 3.05085
50 4HKP TKW 3.05085
51 5AHM IMP 3.05085
52 3KDN CAP 3.05085
53 2Z6I FMN 3.05085
54 1TUF AZ1 3.05085
55 3EPO MP5 3.05085
56 2C29 DQH 3.05085
57 2C29 NAP 3.05085
58 5YJS SAL 3.05085
59 2RJH DCS 3.05085
60 2PTZ PAH 3.05085
61 5TTJ FAD 3.05085
62 5VJE GOS 3.05085
63 5AEE NSQ 3.05085
64 4NMC FAD 3.05085
65 3MI2 PFU 3.22581
66 4O9S 2RY 3.25581
67 1DQX BMP 3.37079
68 4Z87 5GP 3.38983
69 4RF7 ARG 3.38983
70 4Z0G 5GP 3.38983
71 6G34 5ID 3.38983
72 6F3G CJN 3.38983
73 5GJO PLP 3.38983
74 4J1Q NDP 3.38983
75 3X01 AMP 3.38983
76 2WYV NAD 3.44828
77 6GNO XDI 3.7037
78 1PVN MZP 3.72881
79 1ME8 RVP 3.72881
80 4TR9 ASP TRP ASN 3.72881
81 2BLE 5GP 3.72881
82 2VD9 IN5 3.72881
83 2VD9 EPC 3.72881
84 2Q8Z NUP 3.72881
85 1OX5 1PR 3.72881
86 3JU6 ANP 3.72881
87 1VRP ADP 3.72881
88 4TR9 38D 3.72881
89 2FFC U5P 3.72881
90 3KRU FMN 3.79009
91 1JG3 ADN 3.82979
92 2QCD U5P 3.84615
93 5F90 GLA GAL BGC 5VQ 3.84615
94 1QY1 PRZ 4.02299
95 1ADO 13P 4.0678
96 2HSA FMN 4.0678
97 4Y8D 49J 4.0678
98 5CIC 51R 4.08163
99 1M5W DXP 4.11523
100 1RBO CAP 4.40678
101 3EAU PDN 4.40678
102 3EAU NDP 4.40678
103 5DF1 NAP 4.40678
104 5DF1 58X 4.40678
105 4JTA NAP 4.40678
106 1IR1 CAP 4.40678
107 1TB3 FMN 4.40678
108 1ZFJ IMP 4.74576
109 5Z21 OXM 4.74576
110 3DR4 G4M 4.74576
111 3OVR 5SP 4.82456
112 4NAT 2W5 5
113 4NAT ADP 5
114 4R38 RBF 5
115 1GVE NAP 5.08475
116 3W9Z FMN 5.08475
117 5TKL G3H 5.08475
118 5YB7 FAD 5.08475
119 5YB7 ORN 5.08475
120 1S16 ANP 5.08475
121 1UZD CAP 5.08475
122 5YSN 5AD 5.08475
123 2Q3R FMN 5.08475
124 1UZH CAP 5.08475
125 5A5W GUO 5.13834
126 1X1Z BMP 5.15873
127 1QPR PPC 5.28169
128 4UAL 3FV 5.42373
129 3JQ9 NAP 5.55556
130 3BMN NAP 5.55556
131 3SAO DBH 5.625
132 1LOR BMP 5.70175
133 1VFS DCS 5.76271
134 5J5R 6G1 6.1017
135 5J5R IMP 6.1017
136 4Q4K FMN 6.1017
137 1GTE IUR 6.1017
138 1GTE FMN 6.1017
139 1F9V ADP 6.1017
140 1NJJ ORX 6.1017
141 2PLK P3D 6.1017
142 2G30 ALA ALA PHE 6.20155
143 4NAE 1GP 6.22222
144 2BP1 NDP 6.38889
145 1AL8 DHP 6.40669
146 1AL8 FMN 6.40669
147 3B0P FMN 6.44068
148 1L5Y BEF 6.44068
149 3HGM ATP 6.80272
150 5H9P TD2 6.96203
151 2GVJ DGB 7.11864
152 4IXH IMP 7.11864
153 4HXY NDP 7.11864
154 4D52 GXL 7.11864
155 4D52 GIV 7.11864
156 1NIU DCS 7.11864
157 5ALC TIQ 7.26496
158 2RDT FMN 7.45763
159 2RDT 2RD 7.45763
160 1UJP CIT 7.74908
161 1EIX BMQ 7.7551
162 1EXB NDP 7.76699
163 4Y24 TD2 7.79221
164 4WZH FMN 7.79661
165 4S28 SAH 7.79661
166 4S28 AIR 7.79661
167 1VGR COA 7.79661
168 5N5S NAP 8.13559
169 2Q3O FMN 8.13559
170 1ICP FMN 8.13559
171 1HYH NAD 8.13559
172 5A89 ADP 8.33333
173 5A89 FMN 8.33333
174 5GVH FMN 8.59873
175 1DBT U5P 8.78661
176 2TPS TPS 8.81057
177 3MJY IJZ 8.81356
178 3MJY FMN 8.81356
179 3WG3 A2G GAL NAG FUC 8.98876
180 3EXS 5RP 9.04977
181 2OO0 PLP 9.15254
182 4UTU LRY 9.17031
183 4UTW RFW 9.17031
184 6FA4 D1W 9.24856
185 1GT4 UNA 9.43396
186 5DYO FLU 9.63303
187 4WOE ADP 9.83051
188 2H8Z 8CM 10.1695
189 2H8Z FMN 10.1695
190 3C3N FMN 10.1695
191 4AF0 IMP 10.5085
192 5N9Z CAP 10.5085
193 4JEJ 1GP 10.6557
194 2F5Z FAD 10.9375
195 6CUZ FEV 11.1864
196 3BW2 FMN 11.5254
197 5ABH YWN 11.5254
198 5OCS FMN 12.8814
199 4ITU NAI 13.0112
200 3HCH RSM 13.0137
201 1YNQ NDP 13.2203
202 6BJ0 G6P 13.2203
203 1WDD CAP 13.2812
204 2NNQ T4B 13.7405
205 2V63 CAP 14.2857
206 2VDH CAP 14.2857
207 2V6A CAP 14.2857
208 2V67 CAP 14.2857
209 2V68 CAP 14.2857
210 1OVD ORO 14.9153
211 1OVD FMN 14.9153
212 1IR2 CAP 15
213 5LXT GDP 16.7832
214 2C91 NAP 18.6391
215 3NZ1 3NY 19.9234
216 1EP2 ORO 21.0728
217 2HK9 SKM 22.9091
218 1RBL CAP 24.7706
219 1KBI PYR 31.5254
220 1KBI FMN 31.5254
221 1W8S FBP 45.6274
Pocket No.: 2; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 33
This union binding pocket(no: 2) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4WCX MET 1.69492
2 5KJW 53C 2.0339
3 4A22 TD4 2.37288
4 2GJP MAL 2.71186
5 4B0T ADP 2.71186
6 1RJW ETF 3.05085
7 4RPL 3UC 3.38983
8 5UIU 8CG 3.38983
9 4XF6 LIP 3.663
10 4XF6 INS 3.663
11 4XF6 ADP 3.663
12 2AL2 PEP 3.72881
13 2J3M ATP 3.72881
14 3ZNN 4WL 4.40678
15 3ZNN FAD 4.40678
16 3WGT FAD 4.40678
17 1D8C GLV 4.74576
18 5G5G MCN 4.80349
19 4H8N NDP 6.1017
20 4NZN ANP 7.11864
21 4NZN 2OU 7.11864
22 5Z20 OXM 7.11864
23 4D4U FUC NDG GAL FUC 7.11864
24 4D4U FUC 7.11864
25 2JLD AG1 8.13559
26 1XSE NDP 8.13559
27 5OCG 9R5 8.46561
28 6DAW ARG 8.81356
29 4K26 SFF 9.05797
30 3QH2 3NM 9.95475
31 3WG6 NDP 10.1695
32 5F6U 5VK 10.1911
33 4ZCW 4NG 12.2034
Pocket No.: 3; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 13
This union binding pocket(no: 3) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 2QBU SAH 2.15517
2 3E9I XAH 3.05085
3 4RPL FAD 3.38983
4 6DVH FMN 3.38983
5 1QO8 FAD 3.72881
6 4WAS NAP 4.0678
7 3GFZ C2E 4.74576
8 5EK3 5PK 4.74576
9 6F5W KG1 5.42373
10 3W9F I3P 5.76923
11 5GWT SIN 11.8644
12 4ITU 1HS 13.0112
13 3KIF GDL 16.9811
Pocket No.: 4; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 12
This union binding pocket(no: 4) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4BG4 ADP 1.69492
2 1F6D UDP 2.0339
3 5L13 6ZE 2.71186
4 5F90 GLA GAL 3.84615
5 2VVL FAD 4.0678
6 2Q1W NAD 5.42373
7 5BVA FAD 6.44068
8 5GVL GI8 6.44068
9 5GVL PLG 6.44068
10 1N62 FAD 6.94444
11 4E1O PLP PVH 11.8644
12 1EP2 FMN 21.0728
Pocket No.: 5; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 8
This union binding pocket(no: 5) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1Z48 FMN 6.44068
2 2XXP DSL 7.45763
3 1SJD NPG 9.83051
4 1I2B USQ 10.5085
5 1I2B NAD 10.5085
6 1I2B UPG 10.5085
7 4YCA NDP 11.5646
8 5GWT NAD 11.8644
Pocket No.: 6; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 6
This union binding pocket(no: 6) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 6HTO MET 3.05085
2 6HTO 5AD 3.05085
3 1EWF PC1 4.0678
4 5DEY 59T 4.74576
5 2P3V SRT 5.08475
6 4OYA 1VE 5.76271
Pocket No.: 7; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 2
This union binding pocket(no: 7) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5TZO 7V7 6.91489
2 1RZM PEP 17.2881
Pocket No.: 8; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 6
This union binding pocket(no: 8) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1UNB PN1 2.0339
2 1UNB AKG 2.0339
3 1BWV CAP 6.52174
4 2FKA BEF 6.97674
5 2PHN GDP 8.66142
6 3ICS FAD 12.8814
Pocket No.: 9; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 2
This union binding pocket(no: 9) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 2CFC NAD 2.4
2 2WQP WQP 2.71186
Pocket No.: 10; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 3glc.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 3
This union binding pocket(no: 11) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3GC8 B45 7.79661
2 1OC2 NAD 9.49153
3 1OC2 TDX 9.49153
Pocket No.: 12; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 5
This union binding pocket(no: 12) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4X7Q 3YR 2.88462
2 1P7T PYR 4.74576
3 5I60 67W 7.45763
4 2ZJ1 ARJ 9.83051
5 2ZJ1 NAD 9.83051
Pocket No.: 13; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 2
This union binding pocket(no: 13) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3HDY FAD 2.0339
2 1UR1 XYS XYP AHR 2.37288
Pocket No.: 14; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 3
This union binding pocket(no: 14) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5BUK FAD 1.69492
2 3FPF MTA 3.72881
3 3FPF TNA 3.72881
Pocket No.: 15; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 2
This union binding pocket(no: 15) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3DG6 MUC 2.0339
2 4QNW FMN 7.45763
Pocket No.: 16; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 5
This union binding pocket(no: 16) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1DZK PRZ 1.91083
2 3HB5 NAP 3.38983
3 2J3M PRI 3.72881
4 4CLI 5P8 5.08475
5 6G9I CXX 6.77966
Pocket No.: 17; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 17) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 18; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 19; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 1
This union binding pocket(no: 19) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5UMY TNN 5.71429
Pocket No.: 20; Query (leader) PDB : 3GLC; Ligand: R5P; Similar sites found with APoc: 2
This union binding pocket(no: 20) in the query (biounit: 3glc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1M0W ANP 6.77966
2 6DWI HD4 10.7296
APoc FAQ
Feedback