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Receptor
PDB id Resolution Class Description Source Keywords
3GJ8 1.82 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF34 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
A:303;
C:301;
C:303;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ8 1.82 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF34 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ8; Ligand: GDP; Similar sites found with APoc: 629
This union binding pocket(no: 1) in the query (biounit: 3gj8.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4D81 ADP None
2 2V2V V12 1.35747
3 3DKP ADP 1.80995
4 3IUY AMP 1.80995
5 5XKT GNP 2
6 2FNA ADP 2.26244
7 5WRJ A3P 2.26244
8 5WRI A3P 2.26244
9 4UTG ANP 2.26244
10 3ITJ CIT 2.26244
11 1NV8 SAM 2.71493
12 4PPF FLC 3.16742
13 5NM7 GLY 3.16742
14 4NU0 AP5 3.26087
15 2ZPA ADP 3.26087
16 1H74 ADP 3.26087
17 2X7I CIT 3.26087
18 2OFW ADX 3.36538
19 1OBV FMN 3.5503
20 2Q2Y ADP 3.61991
21 2Q2Y MKR 3.61991
22 3P4X ADP 3.61991
23 1SVM ATP 3.61991
24 1DAK DPU 3.61991
25 1DAK ADP 3.61991
26 3QF7 ANP 3.61991
27 3MGB PAP 3.76176
28 1JJV ATP 3.8835
29 2PEZ DAT 3.91061
30 2PEZ GGZ 3.91061
31 2C78 GNP 4.0724
32 5W7Q GDP 4.0724
33 3TK1 GDP 4.0724
34 2C77 GNP 4.0724
35 1JI0 ATP 4.0724
36 1P72 ADP 4.0724
37 5G3Y ADP 4.0724
38 5G41 AP5 4.0724
39 1XP8 AGS 4.0724
40 2IXE ATP 4.0724
41 5LLB 6YZ 4.0724
42 2D2F ADP 4.0724
43 5MEX SZZ 4.0724
44 4TL6 ANP 4.0724
45 1ZIN AP5 4.14747
46 4MKF AP5 4.14747
47 3FB4 AP5 4.16667
48 5W75 GDP 4.34783
49 4AG5 ADP 4.34783
50 5I34 GDP 4.34783
51 2GMV UN8 4.34783
52 2GMV PEP 4.34783
53 1D2N ANP 4.34783
54 1NHX FTB 4.34783
55 1NHX PEP 4.34783
56 1G3M PCQ 4.34783
57 1G3M A3P 4.34783
58 1AQU A3P 4.34783
59 3B5J 12D 4.52489
60 4ZKD GDP 4.52489
61 5ZXD ATP 4.52489
62 1E2K TMC 4.52489
63 1R0X ATP 4.52489
64 4KBF AMP 4.52489
65 5BYK OAQ 4.52489
66 5BYK A3P 4.52489
67 3L6C MLI 4.52489
68 1S3G AP5 4.60829
69 4CVN ADP 4.71204
70 1G6H ADP 4.97738
71 3NHB ADP 4.97738
72 1YQT ADP 4.97738
73 3A4M ADP 4.97738
74 1OXV ANP 4.97738
75 2OZE AGS 4.97738
76 2QEN ADP 4.97738
77 3HU3 AGS 4.97738
78 4HSE ADP 4.97738
79 2CBZ ATP 4.97738
80 1OFH ADP 4.97738
81 1NST A3P 4.97738
82 2F5X ASP 5.12821
83 5BQ5 ADP BEF 5.29101
84 1BO4 COA 5.35714
85 3MD0 GDP 5.42986
86 5VHC BEF ADP 5.42986
87 2A2C ADP 5.42986
88 2A2C NG1 5.42986
89 1GOJ ADP 5.43478
90 3LRE ADP 5.43478
91 4WZ6 ATP 5.43478
92 3DC4 ADP 5.43478
93 3KJI ADP 5.43478
94 3FKQ ATP 5.43478
95 1XX6 ADP 5.43478
96 4MKG AP5 5.43478
97 2QQ0 ANP 5.43478
98 2QQ0 THM 5.43478
99 2QQ0 ADP 5.43478
100 2QQ0 TMP 5.43478
101 2GK6 ADP 5.43478
102 2J5V PCA 5.43478
103 6AIC AMP 5.43478
104 5K5Z ANP 5.43478
105 1L2T ATP 5.43478
106 2ZW5 COA 5.43478
107 5J5R IMP 5.43478
108 5J5R 6G1 5.43478
109 2W58 ADP 5.44554
110 1VHT BA3 5.50459
111 4KFU ACP 5.66038
112 4R2I ANP 5.71429
113 3COB ADP 5.88235
114 1F9V ADP 5.88235
115 2PZE ATP 5.88235
116 3E70 GDP 5.88235
117 4KVA GTP 5.88235
118 1WF3 GNP 5.88235
119 2NCD ADP 5.88235
120 4H1V GNP 5.88235
121 2DPY ADP 5.88235
122 1G6O ADP 5.88235
123 3QXC ATP 5.88235
124 3T34 GDP 5.88235
125 6DEF GCP 5.88235
126 3QKT ANP 5.88235
127 1UKZ ADP 5.91133
128 1Y63 ADP 5.97826
129 1NN5 ANP 6.04651
130 1NN5 2DT 6.04651
131 1QF9 ADP 6.18557
132 1QF9 ALF 6.18557
133 1QF9 C5P 6.18557
134 1YRB GDP 6.33484
135 1PUJ GNP 6.33484
136 6G14 G4P 6.33484
137 5U32 GDP 6.33484
138 4PX9 ADP 6.33484
139 1P9B GDP 6.33484
140 3Q9L ATP 6.33484
141 1OE0 TTP 6.33484
142 2I4I AMP 6.33484
143 1BG2 ADP 6.52174
144 6A20 ADP 6.52174
145 2Y65 ADP 6.52174
146 4P4T GDP 6.52174
147 2XTZ GSP 6.52174
148 3EWA ANP 6.52174
149 3ZFD ANP 6.52174
150 5ZBR ANP 6.52174
151 4PFO ADP 6.52174
152 1Z83 AP5 6.52174
153 4R43 GDP 6.52174
154 5YV5 ADP 6.52174
155 5Y6N ADP 6.52174
156 5J1J ANP 6.52174
157 5M7P ADP 6.52174
158 2VB6 ADP BEF 6.52174
159 3BFX A3P 6.52174
160 5X40 ACP 6.52174
161 2JK0 ASP 6.52174
162 6ECT SAM 6.52174
163 5T67 JHZ 6.52174
164 5AHO TLA 6.52174
165 3QVV A3P 6.52174
166 3QVV 3QV 6.52174
167 2B8W ALF 5GP 6.52174
168 1GXU 2HP 6.59341
169 3EC1 GDP 6.78733
170 3CNL GNP 6.78733
171 1TAD GDP 6.78733
172 1TAD ALF 6.78733
173 1GOT GDP 6.78733
174 5L3V GDP 6.78733
175 6CS8 F9Y 6.78733
176 2ZFI ADP 6.78733
177 3FWY ADP 6.78733
178 1OS1 PYR 6.78733
179 1XKV ATP 6.78733
180 1OS1 ATP 6.78733
181 4GOX A3P 6.78733
182 5MZN ADP 6.78733
183 1CR1 TTP 6.78733
184 6EJI UD2 6.78733
185 5MVR ADP 6.79012
186 4TTQ ATP 6.97674
187 1ZUI SKM 7.14286
188 4HI0 GDP 7.23982
189 3G5N PB2 7.23982
190 2B8T THM 7.23982
191 3H86 AP5 7.29167
192 3W5J GDP 7.35294
193 4BQS K2Q 7.38636
194 4BQS ADP 7.38636
195 3WY9 GDP 7.6087
196 3WYA GDP 7.6087
197 2VVG ADP 7.6087
198 1RRC ADP 7.6087
199 1KO8 6PG 7.6087
200 1LVK MNT BEF 7.6087
201 4RZ3 ADP 7.6087
202 6B8B ADP 7.6087
203 3FVQ ATP 7.6087
204 1R6B ADP 7.6087
205 5N69 ADP 7.6087
206 4FCW ADP 7.6087
207 4LJ9 ACP 7.6087
208 2C9O ADP 7.6087
209 4YS0 ADP 7.6087
210 2F3R G5P 7.6087
211 5TIV A3P 7.6087
212 4UXH T5A 7.6087
213 1QHG ATP 7.6087
214 2PI8 NAG NAG NAG NAG NAG NAG 7.6087
215 3AB3 GDP 7.69231
216 2OG2 MLI 7.69231
217 3B9Q MLI 7.69231
218 1ZCB GDP 7.69231
219 5L3R GCP 7.69231
220 6C90 ADP 7.69231
221 3KLL MAL 7.69231
222 5KSP GDP 7.89474
223 3UIE ANP 8
224 5BN3 ADP 8.1448
225 2HF9 GSP 8.1448
226 2QZ4 ADP 8.1448
227 1F5N GNP 8.1448
228 5IRR GSP 8.1448
229 3VMF GTP 8.69565
230 4U00 ADP 8.69565
231 5L3W GDP 8.69565
232 5WC2 ADP 8.69565
233 2ZR9 DTP 8.69565
234 5AK0 8V1 8.69565
235 5L3S GNP 8.69565
236 4X8O AP5 8.69565
237 2PL3 ADP 8.69565
238 2XTN GTP 8.69565
239 1XMV ADP 8.69565
240 1G41 ADP 8.69565
241 4BFW ZVW 8.69565
242 2D7D ADP 8.69565
243 3ZS9 ADP ALF 8.69565
244 2WOJ ADP ALF 8.69565
245 2JJK R15 8.69565
246 1OYY AGS 8.69565
247 5X62 SAH 8.69565
248 2ZPT A3P 8.69565
249 4A4Z ANP 8.69565
250 3R96 AMP 8.69565
251 3R96 ACO 8.69565
252 3KC1 2T6 8.69565
253 3PQC GDP 8.71795
254 2JAQ DCP 8.78049
255 6AU6 GDP 9.04977
256 2ODE ALF GDP 9.04977
257 4NON GDP 9.04977
258 4OHY ANP 9.04977
259 6B4K ANP 9.04977
260 1YTM ATP 9.04977
261 4DDY DN6 9.04977
262 5K2M ADP 9.43396
263 4LPS GDP 9.50226
264 1G3Q ADP 9.50226
265 1ION ADP 9.50226
266 4LC1 GDP 9.78261
267 2WJH GDP 9.78261
268 1SVI GDP 9.78261
269 2WJH FLC 9.78261
270 4Q1A 2XZ 9.78261
271 4Q1A UDP 9.78261
272 1QF5 GDP 9.78261
273 1QF5 RPL 9.78261
274 1FP6 ADP 9.78261
275 2BIF ANP 9.78261
276 2BIF SIN 9.78261
277 2CE7 ADP 9.78261
278 2XAU ADP 9.78261
279 3TBK ANP 9.78261
280 2QG6 NMN 9.78261
281 1NJF ADP 9.78261
282 5I0H ADP BEF 9.78261
283 1NJF AGS 9.78261
284 3ZQ6 ADP ALF 9.78261
285 3BER AMP 9.78261
286 4M7V RAR 9.78261
287 2ZJ5 ADP 9.78261
288 1K6M AGS 9.78261
289 4M7V NAP 9.78261
290 5LV1 78T 9.78261
291 4HUT ATP 9.78261
292 5H7J GCP 9.95475
293 5H7K GDP 9.95475
294 5TSH ADP 9.95475
295 2WHX ADP 9.95475
296 5TSH ANP 9.95475
297 1SVK ALF GDP 9.95475
298 1BH2 GSP 9.95475
299 2YOH WMJ 10
300 3U6B GDP 10.4072
301 4P3Y GDP 10.4072
302 1D8T GDP 10.4072
303 5JBQ GDP 10.4072
304 4G5G GDP 10.4072
305 3U6K GDP 10.4072
306 2BVN GNP 10.4072
307 4PC3 GDP 10.4072
308 4YMU ATP 10.4072
309 4XGU ADP 10.4072
310 2GDJ ANP 10.4072
311 2WJG GDP 10.6383
312 5H68 AGS 10.8597
313 2AWN ADP 10.8696
314 3H4S ADP 10.8696
315 3WXM GTP 10.8696
316 3CX8 GSP 10.8696
317 4FRZ ADP 10.8696
318 2IS6 ADP 10.8696
319 2OBM ADP 10.8696
320 2JLR ANP 10.8696
321 4QRH 0O2 10.8696
322 5C9P FUC 10.8696
323 3RLF ANP 10.8696
324 5H4S RAM 10.8696
325 1VKJ A3P 10.8696
326 1FQJ GDP 10.8844
327 1FQK GDP 10.8844
328 1FQJ ALF 10.8844
329 1LVG ADP 11.1111
330 1GP2 GDP 11.3122
331 5KDO GDP 11.3122
332 1X6V ADP 11.3122
333 1UJ2 ADP 11.3122
334 1UJ2 C5P 11.3122
335 1AKY AP5 11.3636
336 1M7G AV2 11.3744
337 1M7G ADP 11.3744
338 1M7G ADX 11.3744
339 2RGX AP5 11.6505
340 2XT3 ADP 11.7647
341 1RJ9 GCP 11.7647
342 2IYL GDP 11.7647
343 3DEF GDP 11.7647
344 5FHD ADP ALF 11.7647
345 1SQ5 ADP 11.7647
346 5FTB ANP 11.7647
347 2Z5F A3P 11.7647
348 2RCN GDP 11.9565
349 2GKS ADP 11.9565
350 1CS4 GSP 11.9565
351 1IHU AF3 11.9565
352 1IHU ADP 11.9565
353 1FNN ADP 11.9565
354 5YF1 8V0 11.9565
355 5YF1 SFG 11.9565
356 1OJ4 ANP 11.9565
357 1ME8 RVP 11.9565
358 3TMK T5A 12.037
359 5H67 ATP 12.0603
360 5CK5 GDP 12.2172
361 4WZA ACP 12.2172
362 4WZA ADP 12.2172
363 4NE2 ADP 12.2172
364 4NE2 SH2 12.2172
365 1H65 GDP 12.2172
366 5UIV ADP 12.2172
367 3IO3 ADP 12.2172
368 1NRJ GTP 12.6582
369 5HCN GCP 12.6697
370 1T5C ADP 12.6697
371 4TMZ GSP 12.6697
372 5KUT GDP 13.0435
373 3ZIA ATP 13.0435
374 5LB3 ADP 13.0435
375 5LTJ ADP 13.0435
376 3ZIA ADP 13.0435
377 4IDN GNP 13.0435
378 3B7G ANP 13.0435
379 5LTJ BEF 13.0435
380 1W4R TTP 13.0435
381 2ORV 4TA 13.0435
382 5E5U MLI 13.0435
383 2O0J ADP 13.1222
384 1TQ4 GDP 13.5747
385 1JJ7 ADP 14.0271
386 5K04 COA 14.0271
387 4E03 ADP 14.0777
388 4V03 ADP 14.1304
389 4IHQ ADP 14.1304
390 5XDR ADP 14.1304
391 3VX3 ADP 14.1304
392 4YJ1 ADP 14.1304
393 6FAA ADP 14.1304
394 2FAH GDP 14.1304
395 4PJ3 ANP 14.1304
396 2ZE7 DST 14.1304
397 2ZE7 AMP 14.1304
398 4TMK T5A 14.1304
399 6H5E ANP 14.1304
400 4OI4 ATP 14.1304
401 4JLS 3ZE 14.4737
402 5M04 GDP 14.4796
403 2IL4 COA 14.5631
404 2CDN ADP 15.2174
405 5VGR GDP 15.2174
406 4ZDJ UTP 15.2174
407 3V2U ATP 15.2174
408 6CRK GDP 15.3846
409 2OM2 GDP 15.3846
410 1Y3A GDP 15.3846
411 4YDS ATP 16.2896
412 4J0Q GDP 16.3043
413 1W0J ADP 16.3043
414 4IOK XPO 16.3043
415 4IOK ADP 16.3043
416 4ZNL BEF ADP 16.3043
417 3KTA AP5 16.3043
418 4GBM A3P 16.3043
419 1W0J ADP BEF 16.3043
420 5J1S ATP 17.0732
421 2ZTS ADP 17.1315
422 1WDT GTP 17.1946
423 1IWE IMP 17.1946
424 5GOE GDP 17.3913
425 1B0U ATP 17.3913
426 1XEX ATP 17.3913
427 4ZG4 VO4 ADP 18.0995
428 5IRN ADP 18.4783
429 4WOP CTP 18.4783
430 2FSH ANP 18.4783
431 1W7J ADP BEF 18.552
432 3IIJ ADP 18.8889
433 4XTR ADP 19.5652
434 1Z6T ADP 19.5652
435 4XTR ATP 19.5652
436 4XVU ATP 19.5652
437 2Q6B HR2 19.5652
438 2VOH CIT 19.5652
439 2X77 GDP 19.5767
440 5KSZ GCP 20.6522
441 1V8K ANP 20.6522
442 4LYA ATP 20.6522
443 5IFS ADP 20.6522
444 1QHH ATP 20.6522
445 1Q20 PLO 20.6522
446 1Q20 A3P 20.6522
447 4M9Q GNP 20.8145
448 3DOE GTP 20.8333
449 2KIN ADP 21
450 1UPT GTP 21.0526
451 3AQ4 GDP 21.1957
452 1KSH GDP 21.5054
453 1F6B GDP 21.7172
454 1MKY GDP 21.7195
455 5HR5 ADP 21.7391
456 4JZ8 CIT 21.7391
457 3RC3 ANP 21.7391
458 1S7N COA 21.7391
459 1MR3 G3D 22.0994
460 1HTW ADP 22.1519
461 1O3Y GTP 22.2892
462 2J59 GTP 22.2892
463 1J2J GTP 22.2892
464 4YLG GDP 22.5434
465 5W76 GDP 22.6244
466 2WIC GNP 23.0769
467 4R98 GNH 23.0769
468 1RE0 GDP 23.1707
469 1S9D GDP 23.1707
470 2R4V GSH 23.5294
471 4KAX GTP 23.6686
472 3BFV ADP 23.913
473 4JLV ADP 23.913
474 2A5F GTP 24
475 4DCT GDP 24.4344
476 3PCR GTP 24.6914
477 2FH5 GTP 25
478 5GVR LMR 25
479 3EZ2 ADP 25
480 1M2O GNP 25.2632
481 3N5C GDP 25.3086
482 2W83 GTP 25.4545
483 3A1S GDP 25.7919
484 5ZB0 ADP 27.1739
485 5ZB0 TYD 27.1739
486 2V7Q ATP 28
487 2CK3 ANP 28
488 2V7Q ADP 28
489 2CK3 ADP 28
490 2WKQ GTP 28.0543
491 4QM7 GTP 28.2609
492 4ZI2 GNP 28.4211
493 4GOJ GNP 28.5714
494 2QTV GNP 28.7425
495 2GJ8 ALF GDP 29.0698
496 2J0V GDP 29.2453
497 1FZQ GDP 29.2818
498 5JCP GDP ALF 29.4118
499 1YZG GDP 29.6089
500 1B7T ADP 30.4348
501 1KK8 BEF ADP 30.4348
502 1ZJ6 G3D 30.4813
503 3T12 GDP ALF 30.8081
504 3T1O GDP 30.8081
505 3REF GDP 30.9278
506 1GWN GTP 31.2195
507 3T5G GDP 31.4917
508 1RYH GNP 32.0197
509 6BSX GDP 32.0225
510 6BSX E7S 32.0225
511 4BAS GNP 32.1608
512 1DS6 GDP 32.8125
513 1E96 GTP 32.8125
514 1I4D GDP 33.3333
515 2W2X GSP 33.5135
516 1OW3 GDP 33.6788
517 4V0K GDP 33.7278
518 2GCO GNP 33.8308
519 2GCN GDP 33.8308
520 1NF3 GNP 33.8462
521 5DI3 GNP 34.0541
522 5XC5 GTP 34.0909
523 1A4R GNH 34.555
524 1A4R GDP 34.555
525 4D0N GDP 34.5946
526 6BC0 GSP 34.5946
527 6BCA GSP 34.5946
528 6BCB GSP 34.5946
529 1CXZ GSP 34.6154
530 1M7B GTP 34.7826
531 2NGR GDP 35.0785
532 1GRN GDP 35.0785
533 4ITR GDP 35.0785
534 3LXR GDP 35.1351
535 5HPY GDP 35.1351
536 2WMO GTP 35.2632
537 1G4U GDP 35.3261
538 1G4U AF3 35.3261
539 4XOI GTP 35.5556
540 2FJU GSP 35.9551
541 4XSH GSP 36.3129
542 1KMQ GNP 36.413
543 4YC7 GNP 36.4641
544 5IRC GDP 36.5591
545 1MH1 GNP 36.5591
546 1TX4 ALF GDP 36.7232
547 4DID GDP 37.3057
548 1HE1 GDP 37.5
549 1HE1 AF3 37.5
550 3SBD GNP 37.9679
551 1R4A GNP 38.7879
552 1ZD9 GDP 38.8298
553 5EE5 GTP 39.1813
554 2G77 GDP 39.899
555 2G77 AF3 39.899
556 4DKX GDP 41.2037
557 2BCG GDP 41.7476
558 5OCG GNP 41.7989
559 4U5X GNP 42.1348
560 2F9L GDP 42.2111
561 1OIX GDP 42.4084
562 3CPJ GDP 42.5339
563 5UQW GDP 42.8571
564 1OIV GDP 42.9319
565 5TB5 GDP 43.2432
566 5TAR GDP 43.2432
567 5SZH GNP 43.3498
568 2ZEJ GDP 44.0217
569 2CJW GDP 44.2708
570 2A9K GDP 44.385
571 5JCZ GDP 45.2514
572 5UPK GNP 45.4054
573 1Z06 GNP 45.5026
574 3BC1 GNP 45.641
575 6FA4 GNP 45.6647
576 2EW1 GNP 45.7711
577 1VG0 GDP 45.8937
578 1VG8 GNP 45.8937
579 3Q85 GNP 46.1538
580 4LX0 BEF GDP 46.3277
581 1YZN GNP 46.4865
582 3RWO GDP 46.4865
583 2HV8 GTP 46.5116
584 2A5J GDP 46.5969
585 4K81 GTP 46.7836
586 2C5L GTP 46.8208
587 1ZC3 GNP 46.8571
588 5LEF GTP 47.1204
589 2D7C GTP 47.3054
590 5O2T GSP 47.3373
591 1UAD GNP 47.4286
592 3Q72 GNP 47.5904
593 5WLB GNP 47.5904
594 2UZI GTP 48.1928
595 1CLU DBG 48.1928
596 5E95 GDP 48.2143
597 1G16 GDP 48.2353
598 1X1R GDP 48.3146
599 3TKL GTP 48.4694
600 6BVJ GNP 48.503
601 6D5J GNP 48.503
602 6D5E GNP 48.503
603 6D5H GNP 48.503
604 6BVK GNP 48.503
605 6D5G GNP 48.503
606 1LFD GNP 48.503
607 6BVL GNP 48.503
608 6D59 GNP 48.503
609 6D5L GNP 48.503
610 6BVI GNP 48.503
611 6BVM GNP 48.503
612 6D55 GNP 48.503
613 6D56 GNP 48.503
614 6D5V GNP 48.503
615 6D5M GNP 48.503
616 4C4P GNP 48.5549
617 5OEC GDP 48.6339
618 3KUD GDP 48.7952
619 1WQ1 GDP 48.7952
620 1NVV GNP 48.7952
621 1WQ1 AF3 48.7952
622 1U8Z GDP 48.8095
623 1Z0J GTP 48.8235
624 5O74 GDP 48.8889
625 1KY3 GDP 48.9011
626 1YVD GNP 49.1124
627 3DDC GNP 49.3976
628 2HT6 GDP 49.4253
629 2FFQ GSP 49.7076
630 1Z0A GDP 50
631 3QBT GNP 50
632 4LHW GNP 50
633 3TNF GNP 50
634 4KVG GTP 50
Pocket No.: 2; Query (leader) PDB : 3GJ8; Ligand: GDP; Similar sites found with APoc: 10
This union binding pocket(no: 2) in the query (biounit: 3gj8.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1NV8 MEQ 2.71493
2 3UYW TAU 4.6729
3 3NDJ JHZ 7.6087
4 3NDJ SAH 7.6087
5 4KOT CE3 7.6087
6 5GUD NDP 9.78261
7 5BRT CH9 13.0435
8 1L3I SAH 15.2174
9 1BXG NAD 21.7391
10 1GRN AF3 35.0785
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