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Receptor
PDB id Resolution Class Description Source Keywords
3GJ7 1.93 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF12 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
A:304;
A:306;
C:301;
C:303;
C:305;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ7 1.93 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF12 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3GJ7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ7; Ligand: GDP; Similar sites found with APoc: 650
This union binding pocket(no: 1) in the query (biounit: 3gj7.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4M7V NAP 1.14286
2 4NU0 AP5 1.38249
3 2FNA ADP 2.26244
4 5TIV A3P 2.26244
5 5TVJ COA 2.26244
6 5TVJ 7LF 2.26244
7 2JEV NHQ 2.87356
8 2B4D COA 2.92398
9 2B4B COA 2.92398
10 3ZQ6 ADP ALF 3.06122
11 5K5Z ANP 3.06122
12 4R43 GDP 3.06122
13 3ITJ CIT 3.06122
14 2VZZ SCA 3.06122
15 5J1J ANP 3.16742
16 5I34 GDP 3.16742
17 2ZR9 DTP 3.16742
18 2PWY SAH 3.16742
19 3SXN COA 3.16742
20 2OFW ADX 3.36538
21 1SVI GDP 3.58974
22 1W4R TTP 3.58974
23 3P4X ADP 3.61991
24 3QF7 ANP 3.61991
25 5LB3 ADP 3.61991
26 1DAK DPU 3.61991
27 1DAK ADP 3.61991
28 2D7D ADP 3.61991
29 3WDM ADN 3.61991
30 1JJV ATP 3.8835
31 2PEZ DAT 3.91061
32 2PEZ GGZ 3.91061
33 3TK1 GDP 4.0724
34 5G3Y ADP 4.0724
35 2IXE ATP 4.0724
36 1JI0 ATP 4.0724
37 4FCW ADP 4.0724
38 4LJ9 ACP 4.0724
39 5LLB 6YZ 4.0724
40 2D2F ADP 4.0724
41 3DC4 ADP 4.08163
42 3BFV ADP 4.08163
43 4TL6 ANP 4.08163
44 6B8B ADP 4.08163
45 1Z83 AP5 4.08163
46 4BFW ZVW 4.08163
47 2ZPT A3P 4.08163
48 1S7N COA 4.08163
49 2PI8 NAG NAG NAG NAG NAG NAG 4.08163
50 1J99 AND 4.08163
51 4QRH 0O2 4.28571
52 4ZKD GDP 4.52489
53 3KJI ADP 4.52489
54 1NJF ADP 4.52489
55 1NJF AGS 4.52489
56 3EZ2 ADP 4.52489
57 2OBM ADP 4.52489
58 6ECT SAM 4.52489
59 5WQP NCA 4.52489
60 4X8O AP5 4.6729
61 2VBQ BSJ 4.84848
62 2CDN ADP 4.97512
63 5L3W GDP 4.97738
64 4RZ3 ADP 4.97738
65 2QEN ADP 4.97738
66 1G6H ADP 4.97738
67 4HSE ADP 4.97738
68 2XAU ADP 4.97738
69 3NHB ADP 4.97738
70 2CBZ ATP 4.97738
71 5XDR ADP 4.97738
72 1NST A3P 4.97738
73 2RCN GDP 5.10204
74 4J0Q GDP 5.10204
75 5W75 GDP 5.10204
76 3FKQ ATP 5.10204
77 4CVN ADP 5.10204
78 1ZIN AP5 5.10204
79 5ZXD ATP 5.10204
80 1XEX ATP 5.10204
81 3KTA AP5 5.10204
82 1R6B ADP 5.10204
83 4WZ6 ATP 5.10204
84 5YV5 ADP 5.10204
85 4YJ1 ADP 5.10204
86 2GK6 ADP 5.10204
87 1D2N ANP 5.10204
88 1I0B PEL 5.10204
89 5BYK OAQ 5.10204
90 5BYK A3P 5.10204
91 2IL4 COA 5.10204
92 5K2M ADP 5.10204
93 5BQ5 ADP BEF 5.29101
94 3LRE ADP 5.42986
95 1FNN ADP 5.42986
96 1Q19 SSC 5.42986
97 5GVR LMR 5.42986
98 2W58 ADP 5.44554
99 1VHT BA3 5.50459
100 5ZB0 TYD 5.55556
101 5ZB0 ADP 5.55556
102 1WF3 GNP 5.88235
103 3COB ADP 5.88235
104 4KVA GTP 5.88235
105 4H1V GNP 5.88235
106 3T34 GDP 5.88235
107 3H4S ADP 5.88235
108 4FRZ ADP 5.88235
109 3QKT ANP 5.88235
110 2PZE ATP 5.88235
111 3QXC ATP 5.88235
112 5X40 ACP 5.88235
113 2JK0 ASP 5.88235
114 1Y63 ADP 5.97826
115 3VMF GTP 6.12245
116 3WXM GTP 6.12245
117 4P4T GDP 6.12245
118 3A4M ADP 6.12245
119 3FB4 AP5 6.12245
120 3EWA ANP 6.12245
121 5AK0 8V1 6.12245
122 2IS6 ADP 6.12245
123 1K6M AGS 6.12245
124 4MKF AP5 6.12245
125 4IHQ ADP 6.12245
126 1SVM ATP 6.12245
127 5Y6N ADP 6.12245
128 1XX6 ADP 6.12245
129 2GMV UN8 6.12245
130 2GMV PEP 6.12245
131 2ORV 4TA 6.12245
132 1NHX FTB 6.12245
133 1NHX PEP 6.12245
134 6DEF GCP 6.12245
135 3BER AMP 6.12245
136 2J5V PCA 6.12245
137 1G3M A3P 6.12245
138 1G3M PCQ 6.12245
139 3RC3 ANP 6.12245
140 2Q6B HR2 6.12245
141 4JZ8 CIT 6.12245
142 6DIO NAD 6.12245
143 1X8J A3P 6.12245
144 1KEV NDP 6.12245
145 2XTZ GSP 6.33484
146 6G14 G4P 6.33484
147 1PUJ GNP 6.33484
148 5U32 GDP 6.33484
149 3Q9L ATP 6.33484
150 1OE0 TTP 6.33484
151 2I4I AMP 6.33484
152 4CZG QH3 6.33484
153 4CZG ADP 6.33484
154 4UXH T5A 6.52174
155 1GXU 2HP 6.59341
156 4Q1A UDP 6.78571
157 4Q1A 2XZ 6.78571
158 3EC1 GDP 6.78733
159 1TAD ALF 6.78733
160 1TAD GDP 6.78733
161 3CNL GNP 6.78733
162 3FWY ADP 6.78733
163 2ZFI ADP 6.78733
164 1XKV ATP 6.78733
165 1OS1 PYR 6.78733
166 1OS1 ATP 6.78733
167 1CR1 TTP 6.78733
168 4GOX A3P 6.78733
169 4JLV ADP 6.78733
170 4AVB ACO 6.78733
171 5MVR ADP 6.79012
172 4TTQ ATP 6.97674
173 4KFU ACP 7.14286
174 1F9V ADP 7.14286
175 1KO8 6PG 7.14286
176 1LVK MNT BEF 7.14286
177 1S3G AP5 7.14286
178 4PX9 ADP 7.14286
179 5VGR GDP 7.14286
180 5M7P ADP 7.14286
181 2FAH GDP 7.14286
182 4R2I ANP 7.14286
183 5NM7 GLY 7.14286
184 4UTG ANP 7.14286
185 3UYW TAU 7.14286
186 3R96 AMP 7.14286
187 3R96 ACO 7.14286
188 3QVV A3P 7.14286
189 3QVV 3QV 7.14286
190 3L6C MLI 7.14286
191 4X1Z FUC GAL NDG 7.14286
192 3MGB PAP 7.14286
193 2V2V V12 7.14286
194 2CE7 ADP 7.23982
195 2GKS ADP 7.23982
196 2B8T THM 7.23982
197 2QZS GLC 7.23982
198 2QZS ADP 7.23982
199 2QZS 250 7.23982
200 3V2U ATP 7.23982
201 1VKJ A3P 7.23982
202 3H86 AP5 7.29167
203 4HUT ATP 7.32984
204 3W5J GDP 7.35294
205 4BQS ADP 7.38636
206 4BQS K2Q 7.38636
207 4WOP CTP 7.55556
208 3CX8 GSP 7.69231
209 1ZCB GDP 7.69231
210 3VX3 ADP 7.69231
211 2BIF ANP 7.69231
212 2BIF SIN 7.69231
213 2ZE7 AMP 7.69231
214 2ZE7 DST 7.69231
215 6C90 ADP 7.69231
216 3B9Q MLI 7.69231
217 2OG2 MLI 7.69231
218 5KSP GDP 7.89474
219 1CS4 GSP 8.1448
220 5IRR GSP 8.1448
221 5BN3 ADP 8.1448
222 1XMV ADP 8.1448
223 4ZDJ UTP 8.1448
224 5L3S GNP 8.16327
225 5L3V GDP 8.16327
226 1FP6 ADP 8.16327
227 1P72 ADP 8.16327
228 2Q2Y ADP 8.16327
229 5ZBR ANP 8.16327
230 6A20 ADP 8.16327
231 2Q2Y MKR 8.16327
232 5LTJ ADP 8.16327
233 2QZ4 ADP 8.16327
234 1NN5 ANP 8.16327
235 1NN5 2DT 8.16327
236 1RRC ADP 8.16327
237 2AWN ADP 8.16327
238 1L2T ATP 8.16327
239 6FAA ADP 8.16327
240 4GBM A3P 8.16327
241 5LTJ BEF 8.16327
242 3BFX A3P 8.16327
243 2A2C ADP 8.16327
244 2A2C NG1 8.16327
245 1H74 ADP 8.16327
246 1AQU A3P 8.16327
247 1OJ4 ANP 8.16327
248 5AHO TLA 8.16327
249 4OI4 ATP 8.69565
250 3PQC GDP 8.71795
251 4QM7 GTP 8.77193
252 2JAQ DCP 8.78049
253 4NON GDP 9.04977
254 2ODE ALF GDP 9.04977
255 6AU6 GDP 9.04977
256 6B4K ANP 9.04977
257 1YTM ATP 9.04977
258 4OHY ANP 9.04977
259 4DDY DN6 9.04977
260 4A62 ANP 9.04977
261 3E70 GDP 9.18367
262 5KSZ GCP 9.18367
263 3ZFD ANP 9.18367
264 2VVG ADP 9.18367
265 2C9O ADP 9.18367
266 4AG5 ADP 9.18367
267 3FVQ ATP 9.18367
268 1OFH ADP 9.18367
269 5G41 AP5 9.18367
270 3DKP ADP 9.18367
271 2ZPA ADP 9.18367
272 2FSH ANP 9.18367
273 4ITM ATP 9.18367
274 2JJK R15 9.18367
275 2ZJ5 ADP 9.18367
276 4Z0G 5GP 9.18367
277 2X7I CIT 9.18367
278 3KC1 2T6 9.18367
279 5XOY LYS 9.18367
280 4C0X AQN 9.35961
281 4LPS GDP 9.50226
282 1G3Q ADP 9.50226
283 1ION ADP 9.50226
284 1B0U ATP 9.50226
285 1TKB N1T 9.50226
286 2WJH GDP 9.63855
287 2WJH FLC 9.63855
288 1SVK ALF GDP 9.95475
289 1BH2 GSP 9.95475
290 5H7K GDP 9.95475
291 5H7J GCP 9.95475
292 1Z6T ADP 9.95475
293 2JLR ANP 9.95475
294 1YBH FAD 9.95475
295 2YOH WMJ 10
296 3WY9 GDP 10.2041
297 3WYA GDP 10.2041
298 5L3R GCP 10.2041
299 5WC2 ADP 10.2041
300 3B5J 12D 10.2041
301 5TSH ADP 10.2041
302 4LYA ATP 10.2041
303 2WHX ADP 10.2041
304 1W0J ADP 10.2041
305 5TSH ANP 10.2041
306 1GOJ ADP 10.2041
307 3HU3 AGS 10.2041
308 5I0H ADP BEF 10.2041
309 4IOK XPO 10.2041
310 4IOK ADP 10.2041
311 1W0J ADP BEF 10.2041
312 4YS0 ADP 10.2041
313 5WRJ A3P 10.2041
314 5WRI A3P 10.2041
315 3IUY AMP 10.2041
316 1OYY AGS 10.2041
317 1T3D CYS 10.2041
318 4TQK NAG 10.2041
319 4XGU ADP 10.4072
320 2GDJ ANP 10.4072
321 4ZY1 4U5 10.4072
322 2WJG GDP 10.6383
323 5H68 AGS 10.8597
324 1FQK GDP 10.8844
325 1FQJ GDP 10.8844
326 1LVG ADP 11.1111
327 3U6B GDP 11.2245
328 1D8T GDP 11.2245
329 2BVN GNP 11.2245
330 4LC1 GDP 11.2245
331 5JBQ GDP 11.2245
332 4P3Y GDP 11.2245
333 4G5G GDP 11.2245
334 3MD0 GDP 11.2245
335 3U6K GDP 11.2245
336 4PC3 GDP 11.2245
337 2XTN GTP 11.2245
338 1IHU AF3 11.2245
339 1IHU ADP 11.2245
340 3UIE ANP 11.2245
341 4YMU ATP 11.2245
342 2Y65 ADP 11.2245
343 1BG2 ADP 11.2245
344 1G6O ADP 11.2245
345 1KK8 BEF ADP 11.2245
346 1QF5 RPL 11.2245
347 1QF5 GDP 11.2245
348 1B7T ADP 11.2245
349 4KBF AMP 11.2245
350 5C9P FUC 11.2245
351 1X6V ADP 11.3122
352 1UJ2 ADP 11.3122
353 1UJ2 C5P 11.3122
354 1AKY AP5 11.3636
355 1M7G ADX 11.3744
356 1M7G AV2 11.3744
357 1M7G ADP 11.3744
358 2VOH CIT 11.465
359 2RGX AP5 11.6505
360 5GOE GDP 11.7647
361 3DEF GDP 11.7647
362 2XT3 ADP 11.7647
363 5FHD ADP ALF 11.7647
364 5FTB ANP 11.7647
365 1SQ5 ADP 11.7647
366 2Z5F A3P 11.7647
367 3TMK T5A 12.037
368 5H67 ATP 12.0603
369 5CK5 GDP 12.2172
370 4WZA ADP 12.2172
371 4WZA ACP 12.2172
372 3IO3 ADP 12.2172
373 4NE2 ADP 12.2172
374 4NE2 SH2 12.2172
375 5UIV ADP 12.2172
376 1YRB GDP 12.2449
377 2C78 GNP 12.2449
378 2C77 GNP 12.2449
379 3AB3 GDP 12.2449
380 4U00 ADP 12.2449
381 1OXV ANP 12.2449
382 5VHC BEF ADP 12.2449
383 5IFS ADP 12.2449
384 2DPY ADP 12.2449
385 2F3R G5P 12.2449
386 1Q20 PLO 12.2449
387 1Q20 A3P 12.2449
388 1NRJ GTP 12.6582
389 5HCN GCP 12.6697
390 1T5C ADP 12.6697
391 2O0J ADP 13.1222
392 5W7Q GDP 13.2653
393 4TMZ GSP 13.2653
394 2IYL GDP 13.2653
395 1F5N GNP 13.2653
396 4MKG AP5 13.2653
397 2B8W ALF 5GP 13.2653
398 4ZNL BEF ADP 13.2653
399 4PPF FLC 13.2653
400 2PL3 ADP 13.2653
401 3TBK ANP 13.2653
402 6H5E ANP 13.2653
403 5H4S RAM 13.2653
404 1V8B NAD 13.2653
405 1TQ4 GDP 13.5747
406 1JJ7 ADP 14.0271
407 4E03 ADP 14.0777
408 5IRN ADP 14.2857
409 2WOJ ADP ALF 14.2857
410 3ZS9 ADP ALF 14.2857
411 4XTR ATP 14.2857
412 4XTR ADP 14.2857
413 4XVU ATP 14.2857
414 2NCD ADP 14.2857
415 2OZE AGS 14.2857
416 2QQ0 ANP 14.2857
417 2QQ0 THM 14.2857
418 2QQ0 ADP 14.2857
419 2QQ0 TMP 14.2857
420 1XP8 AGS 14.2857
421 1H65 GDP 15.3061
422 1E2K TMC 15.3061
423 4D81 ADP 15.3061
424 1R0X ATP 15.3061
425 4PJ3 ANP 15.3061
426 5K04 COA 15.3061
427 5MEX PAP 15.3061
428 5MEX SZZ 15.3061
429 1FFU CDP 15.3061
430 1Y3A GDP 15.3846
431 2OM2 GDP 15.3846
432 4YDS ATP 16.2896
433 2FH5 GTP 16.3265
434 1RJ9 GCP 16.3265
435 4V03 ADP 16.3265
436 2VB6 ADP BEF 16.3265
437 1G41 ADP 16.3265
438 4PFO ADP 16.3265
439 5N69 ADP 16.3265
440 4A4Z ANP 16.3265
441 3KLL MAL 16.3265
442 2ZTS ADP 17.1315
443 1IWE IMP 17.1946
444 3RLF ANP 17.3469
445 5J1S ATP 17.3469
446 1QF9 ADP 17.3469
447 1QF9 ALF 17.3469
448 1QF9 C5P 17.3469
449 2QG6 NMN 17.3469
450 1QHG ATP 17.3469
451 1QHH ATP 17.3469
452 4ZG4 VO4 ADP 18.0995
453 5M04 GDP 18.3673
454 6CRK GDP 18.3673
455 1GOT GDP 18.3673
456 1GP2 GDP 18.3673
457 5KDO GDP 18.3673
458 4HI0 GDP 18.3673
459 6CS8 F9Y 18.3673
460 5O3Q CMP 18.3673
461 5HR5 ADP 19.0045
462 1YQT ADP 19.3878
463 5E5U MLI 19.3878
464 2X77 GDP 19.5767
465 5KUT GDP 20.4082
466 1WDT GTP 20.4082
467 3IIJ ADP 20.4082
468 4M9Q GNP 20.8145
469 3DOE GTP 20.8333
470 2KIN ADP 21
471 1UPT GTP 21.0526
472 3AQ4 GDP 21.1957
473 1V8K ANP 21.4286
474 2HF9 GSP 21.4286
475 4TMK T5A 21.4286
476 1KSH GDP 21.5054
477 1F6B GDP 21.7172
478 1MKY GDP 21.7195
479 1MR3 G3D 22.0994
480 1HTW ADP 22.1519
481 2J59 GTP 22.2892
482 1O3Y GTP 22.2892
483 1J2J GTP 22.2892
484 1P9B GDP 22.449
485 3B7G ANP 22.449
486 5MZN ADP 22.449
487 4YLG GDP 22.5434
488 5W76 GDP 22.6244
489 2WIC GNP 23.0769
490 4R98 GNH 23.0769
491 1RE0 GDP 23.1707
492 1S9D GDP 23.1707
493 1UKZ ADP 23.4694
494 1BXG NAD 23.4694
495 2R4V GSH 23.5294
496 4KAX GTP 23.6686
497 2A5F GTP 24
498 4DCT GDP 24.4344
499 5XKT GNP 24.4898
500 3PCR GTP 24.6914
501 1M2O GNP 25.2632
502 3N5C GDP 25.3086
503 2W83 GTP 25.4545
504 1W7J ADP BEF 25.5102
505 4IDN GNP 25.5102
506 3A1S GDP 25.7919
507 6AIC AMP 27.551
508 2WKQ GTP 28.0543
509 4ZI2 GNP 28.4211
510 4GOJ GNP 28.5714
511 3ZIA ATP 28.5714
512 3ZIA ADP 28.5714
513 2QTV GNP 28.7425
514 2GJ8 ALF GDP 29.0698
515 2J0V GDP 29.2453
516 1FZQ GDP 29.2818
517 5JCP GDP ALF 29.4118
518 1YZG GDP 29.6089
519 1ZJ6 G3D 30.4813
520 3T12 GDP ALF 30.8081
521 3T1O GDP 30.8081
522 3REF GDP 30.9278
523 1GWN GTP 31.2195
524 3T5G GDP 31.4917
525 1RYH GNP 32.0197
526 6BSX E7S 32.0225
527 6BSX GDP 32.0225
528 4BAS GNP 32.1608
529 1DS6 GDP 32.8125
530 1E96 GTP 32.8125
531 1I4D GDP 33.3333
532 2W2X GSP 33.5135
533 1OW3 GDP 33.6788
534 4V0K GDP 33.7278
535 2GCN GDP 33.8308
536 2GCO GNP 33.8308
537 1NF3 GNP 33.8462
538 2V7Q ATP 34
539 2CK3 ANP 34
540 2CK3 ADP 34
541 2V7Q ADP 34
542 5DI3 GNP 34.0541
543 5XC5 GTP 34.0909
544 1A4R GNH 34.555
545 1A4R GDP 34.555
546 4D0N GDP 34.5946
547 6BCB GSP 34.5946
548 6BCA GSP 34.5946
549 6BC0 GSP 34.5946
550 1CXZ GSP 34.6154
551 1M7B GTP 34.7826
552 2NGR GDP 35.0785
553 1GRN GDP 35.0785
554 4ITR GDP 35.0785
555 3LXR GDP 35.1351
556 5HPY GDP 35.1351
557 2WMO GTP 35.2632
558 1G4U GDP 35.3261
559 4XOI GTP 35.5556
560 1ZUI SKM 35.7143
561 2FJU GSP 35.9551
562 4XSH GSP 36.3129
563 1KMQ GNP 36.413
564 4YC7 GNP 36.4641
565 1MH1 GNP 36.5591
566 5IRC GDP 36.5591
567 1TX4 ALF GDP 36.7232
568 4DID GDP 37.3057
569 1HE1 GDP 37.5
570 1HE1 AF3 37.5
571 3SBD GNP 37.9679
572 1R4A GNP 38.7879
573 1ZD9 GDP 38.8298
574 5EE5 GTP 39.1813
575 2G77 GDP 39.899
576 2G77 AF3 39.899
577 4DKX GDP 41.2037
578 2BCG GDP 41.7476
579 5OCG GNP 41.7989
580 4U5X GNP 42.1348
581 2F9L GDP 42.2111
582 1OIX GDP 42.4084
583 3CPJ GDP 42.5339
584 5UQW GDP 42.8571
585 1OIV GDP 42.9319
586 5TAR GDP 43.2432
587 5TB5 GDP 43.2432
588 5SZH GNP 43.3498
589 2ZEJ GDP 44.0217
590 2CJW GDP 44.2708
591 2A9K GDP 44.385
592 5JCZ GDP 45.2514
593 5UPK GNP 45.4054
594 1Z06 GNP 45.5026
595 3BC1 GNP 45.641
596 6FA4 GNP 45.6647
597 2EW1 GNP 45.7711
598 1VG0 GDP 45.8937
599 1VG8 GNP 45.8937
600 3Q85 GNP 46.1538
601 4LX0 BEF GDP 46.3277
602 1YZN GNP 46.4865
603 3RWO GDP 46.4865
604 2HV8 GTP 46.5116
605 2A5J GDP 46.5969
606 4K81 GTP 46.7836
607 2C5L GTP 46.8208
608 1ZC3 GNP 46.8571
609 5LEF GTP 47.1204
610 2D7C GTP 47.3054
611 5O2T GSP 47.3373
612 1UAD GNP 47.4286
613 5WLB GNP 47.5904
614 3Q72 GNP 47.5904
615 2UZI GTP 48.1928
616 1CLU DBG 48.1928
617 5E95 GDP 48.2143
618 1G16 GDP 48.2353
619 1X1R GDP 48.3146
620 3TKL GTP 48.4694
621 6D5L GNP 48.503
622 1LFD GNP 48.503
623 6D5J GNP 48.503
624 6D59 GNP 48.503
625 6BVJ GNP 48.503
626 6D55 GNP 48.503
627 6BVL GNP 48.503
628 6D5H GNP 48.503
629 6BVM GNP 48.503
630 6D5E GNP 48.503
631 6D56 GNP 48.503
632 6BVI GNP 48.503
633 6BVK GNP 48.503
634 6D5V GNP 48.503
635 6D5G GNP 48.503
636 6D5M GNP 48.503
637 4C4P GNP 48.5549
638 5OEC GDP 48.6339
639 3KUD GDP 48.7952
640 1WQ1 GDP 48.7952
641 1NVV GNP 48.7952
642 1WQ1 AF3 48.7952
643 1U8Z GDP 48.8095
644 1Z0J GTP 48.8235
645 5O74 GDP 48.8889
646 1KY3 GDP 48.9011
647 1YVD GNP 49.1124
648 3DDC GNP 49.3976
649 2HT6 GDP 49.4253
650 2FFQ GSP 49.7076
651 3QBT GNP 50
652 4LHW GNP 50
653 4KVG GTP 50
654 1Z0A GDP 50
655 3TNF GNP 50
Pocket No.: 2; Query (leader) PDB : 3GJ7; Ligand: GDP; Similar sites found with APoc: 25
This union binding pocket(no: 2) in the query (biounit: 3gj7.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4M7V RAR 1.14286
2 2ZW5 COA 4.97738
3 2O66 FLC 5.18518
4 5XQL C2E 5.88235
5 5YF1 SFG 6.12245
6 5YF1 8V0 6.12245
7 6EJI UD2 6.78733
8 1BO4 COA 7.14286
9 3C5E ATP 7.14286
10 1OBV FMN 8.16327
11 3G5N PB2 9.18367
12 1NV8 MEQ 9.18367
13 1FQK ALF 10.8844
14 1FQJ ALF 10.8844
15 5X62 SAH 11.2245
16 3NDJ JHZ 11.2245
17 3NDJ SAH 11.2245
18 1L3I SAH 14.2857
19 4JLS 3ZE 14.4737
20 5M67 NAD 14.4796
21 5M67 ADE 14.4796
22 5LV1 78T 17.3469
23 5T67 JHZ 17.3469
24 2F5X ASP 18.3673
25 1G4U AF3 35.3261
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