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Receptor
PDB id Resolution Class Description Source Keywords
3GJ5 1.79 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF4 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
C:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ5 1.79 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF4 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ5; Ligand: GDP; Similar sites found with APoc: 632
This union binding pocket(no: 1) in the query (biounit: 3gj5.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4D81 ADP None
2 4M7V RAR 1.14286
3 4M7V NAP 1.14286
4 1I0B PEL 1.35747
5 2V2V V12 1.35747
6 4NU0 AP5 1.38249
7 3DKP ADP 1.80995
8 2X7I CIT 1.80995
9 6AIC AMP 1.86916
10 2FNA ADP 2.26244
11 1BG2 ADP 2.26244
12 4R43 GDP 2.26244
13 5WRJ A3P 2.26244
14 5WRI A3P 2.26244
15 5TIV A3P 2.26244
16 2ZJ5 ADP 2.26244
17 4UTG ANP 2.26244
18 1H74 ADP 2.26244
19 2PI8 NAG NAG NAG NAG NAG NAG 2.26244
20 2WOJ ADP ALF 2.71493
21 3ZS9 ADP ALF 2.71493
22 1GOJ ADP 2.71493
23 3DC4 ADP 2.71493
24 3BFV ADP 2.71493
25 5K5Z ANP 2.71493
26 2Y65 ADP 2.71493
27 2VB6 ADP BEF 2.71493
28 4PFO ADP 2.71493
29 1G3M A3P 2.71493
30 1G3M PCQ 2.71493
31 2ZPT A3P 2.71493
32 5K2M ADP 2.71493
33 1NV8 SAM 2.71493
34 1NV8 MEQ 2.71493
35 2F5X ASP 2.88462
36 5XKT GNP 3
37 1W4R TTP 3.07692
38 4J0Q GDP 3.16742
39 5J1J ANP 3.16742
40 3FKQ ATP 3.16742
41 4V03 ADP 3.16742
42 5I0H ADP BEF 3.16742
43 5I34 GDP 3.16742
44 4AG5 ADP 3.16742
45 2ZR9 DTP 3.16742
46 4IOK XPO 3.16742
47 4IOK ADP 3.16742
48 2ZPA ADP 3.16742
49 2GMV UN8 3.16742
50 2GMV PEP 3.16742
51 1NHX FTB 3.16742
52 1NHX PEP 3.16742
53 5NM7 GLY 3.16742
54 5H4S RAM 3.16742
55 1AQU A3P 3.16742
56 1OBV FMN 3.5503
57 1SVI GDP 3.58974
58 2Q2Y ADP 3.61991
59 2Q2Y MKR 3.61991
60 5LB3 ADP 3.61991
61 3P4X ADP 3.61991
62 5AK0 8V1 3.61991
63 6B8B ADP 3.61991
64 1SVM ATP 3.61991
65 3QF7 ANP 3.61991
66 1DAK ADP 3.61991
67 1DAK DPU 3.61991
68 4BFW ZVW 3.61991
69 2D7D ADP 3.61991
70 2JJK R15 3.61991
71 5T67 JHZ 3.61991
72 1JJV ATP 3.8835
73 2QG6 NMN 4.0201
74 2RCN GDP 4.0724
75 3WXM GTP 4.0724
76 2C78 GNP 4.0724
77 3VMF GTP 4.0724
78 3WY9 GDP 4.0724
79 3TK1 GDP 4.0724
80 3WYA GDP 4.0724
81 2C77 GNP 4.0724
82 5W7Q GDP 4.0724
83 4LYA ATP 4.0724
84 1P72 ADP 4.0724
85 1QF5 RPL 4.0724
86 1QF5 GDP 4.0724
87 5G3Y ADP 4.0724
88 4TL6 ANP 4.0724
89 1JI0 ATP 4.0724
90 5G41 AP5 4.0724
91 4WZ6 ATP 4.0724
92 2FAH GDP 4.0724
93 4YJ1 ADP 4.0724
94 4FCW ADP 4.0724
95 1XP8 AGS 4.0724
96 4GBM A3P 4.0724
97 4LJ9 ACP 4.0724
98 3BER AMP 4.0724
99 5LLB 6YZ 4.0724
100 2D2F ADP 4.0724
101 1BXG NAD 4.0724
102 5MEX SZZ 4.0724
103 4JZ8 CIT 4.0724
104 1ZIN AP5 4.14747
105 4MKF AP5 4.14747
106 3FB4 AP5 4.16667
107 1XX6 ADP 4.18848
108 4QRH 0O2 4.28571
109 4KOT CE3 4.32099
110 2F3R G5P 4.34783
111 1XEX ATP 4.3956
112 3KTA AP5 4.3956
113 4LC1 GDP 4.52489
114 3B5J 12D 4.52489
115 3KJI ADP 4.52489
116 1E2K TMC 4.52489
117 2C9O ADP 4.52489
118 3EWA ANP 4.52489
119 1R6B ADP 4.52489
120 1R0X ATP 4.52489
121 4KBF AMP 4.52489
122 2OBM ADP 4.52489
123 5BYK A3P 4.52489
124 5BYK OAQ 4.52489
125 5J5R IMP 4.52489
126 5J5R 6G1 4.52489
127 1S3G AP5 4.60829
128 3UYW TAU 4.6729
129 4CVN ADP 4.71204
130 2IL4 COA 4.85437
131 2CDN ADP 4.97512
132 1IHU AF3 4.97738
133 1IHU ADP 4.97738
134 5WC2 ADP 4.97738
135 4RZ3 ADP 4.97738
136 2QEN ADP 4.97738
137 3HU3 AGS 4.97738
138 2OZE AGS 4.97738
139 3A4M ADP 4.97738
140 1G6H ADP 4.97738
141 4HSE ADP 4.97738
142 1G41 ADP 4.97738
143 1YQT ADP 4.97738
144 2CBZ ATP 4.97738
145 2IS6 ADP 4.97738
146 1OFH ADP 4.97738
147 5YV5 ADP 4.97738
148 4IHQ ADP 4.97738
149 2J5V PCA 4.97738
150 1NST A3P 4.97738
151 2ZW5 COA 4.97738
152 5E5U MLI 5.02513
153 4MKG AP5 5.06912
154 2O66 FLC 5.18518
155 5BQ5 ADP BEF 5.29101
156 1BO4 COA 5.35714
157 3MD0 GDP 5.42986
158 5GVR LMR 5.42986
159 3LRE ADP 5.42986
160 4IDN GNP 5.42986
161 4YS0 ADP 5.42986
162 2QQ0 ANP 5.43478
163 2QQ0 THM 5.43478
164 2QQ0 TMP 5.43478
165 2QQ0 ADP 5.43478
166 2W58 ADP 5.44554
167 1VHT BA3 5.50459
168 5ZB0 TYD 5.55556
169 5ZB0 ADP 5.55556
170 4KFU ACP 5.66038
171 4R2I ANP 5.71429
172 1WF3 GNP 5.88235
173 3COB ADP 5.88235
174 4P4T GDP 5.88235
175 3E70 GDP 5.88235
176 4KVA GTP 5.88235
177 4H1V GNP 5.88235
178 3T34 GDP 5.88235
179 2OFW ADX 5.88235
180 3H4S ADP 5.88235
181 1V8K ANP 5.88235
182 2PEZ DAT 5.88235
183 2PEZ GGZ 5.88235
184 4FRZ ADP 5.88235
185 1LVK MNT BEF 5.88235
186 3QKT ANP 5.88235
187 3QXC ATP 5.88235
188 2PZE ATP 5.88235
189 5X40 ACP 5.88235
190 4WOP CTP 5.88235
191 2DPY ADP 5.88235
192 1FNN ADP 5.88235
193 6DEF GCP 5.88235
194 3IUY AMP 5.88235
195 5AHO TLA 5.88235
196 1UKZ ADP 5.91133
197 1Y63 ADP 5.97826
198 1NN5 2DT 6.04651
199 1NN5 ANP 6.04651
200 1QF9 C5P 6.18557
201 1QF9 ADP 6.18557
202 1QF9 ALF 6.18557
203 2XTZ GSP 6.33484
204 6G14 G4P 6.33484
205 5U32 GDP 6.33484
206 1P9B GDP 6.33484
207 5IFS ADP 6.33484
208 3Q9L ATP 6.33484
209 4PX9 ADP 6.33484
210 2PL3 ADP 6.33484
211 1OE0 TTP 6.33484
212 2I4I AMP 6.33484
213 4UXH T5A 6.52174
214 2FH5 GTP 6.54206
215 1GXU 2HP 6.59341
216 4Q1A UDP 6.78571
217 4Q1A 2XZ 6.78571
218 3EC1 GDP 6.78733
219 1TAD GDP 6.78733
220 1TAD ALF 6.78733
221 3CNL GNP 6.78733
222 5L3V GDP 6.78733
223 3FWY ADP 6.78733
224 6CS8 F9Y 6.78733
225 2ZFI ADP 6.78733
226 1XKV ATP 6.78733
227 5LTJ ADP 6.78733
228 1CR1 TTP 6.78733
229 4GOX A3P 6.78733
230 5VGR GDP 6.78733
231 4ZNL BEF ADP 6.78733
232 5LTJ BEF 6.78733
233 5MZN ADP 6.78733
234 6EJI UD2 6.78733
235 5MVR ADP 6.79012
236 4TTQ ATP 6.97674
237 1ZUI SKM 7.14286
238 1W0J ADP 7.23982
239 2CE7 ADP 7.23982
240 6FAA ADP 7.23982
241 1W0J ADP BEF 7.23982
242 3G5N PB2 7.23982
243 3TBK ANP 7.23982
244 2FSH ANP 7.23982
245 2B8T THM 7.23982
246 1VKJ A3P 7.23982
247 3H86 AP5 7.29167
248 3W5J GDP 7.35294
249 4BQS ADP 7.38636
250 4BQS K2Q 7.38636
251 3CX8 GSP 7.69231
252 3AB3 GDP 7.69231
253 1ZCB GDP 7.69231
254 5L3R GCP 7.69231
255 3VX3 ADP 7.69231
256 2BIF SIN 7.69231
257 2BIF ANP 7.69231
258 6C90 ADP 7.69231
259 3B9Q MLI 7.69231
260 1Q20 A3P 7.69231
261 1Q20 PLO 7.69231
262 3UIE ANP 8
263 1CS4 GSP 8.1448
264 5IRR GSP 8.1448
265 2HF9 GSP 8.1448
266 1XMV ADP 8.1448
267 4ZDJ UTP 8.1448
268 3PQC GDP 8.71795
269 2JAQ DCP 8.78049
270 1YRB GDP 8.82353
271 2IXE ATP 8.82353
272 5ZXD ATP 8.82353
273 2GK6 ADP 8.82353
274 4TMK T5A 8.82353
275 6H5E ANP 8.82353
276 6AU6 GDP 9.04977
277 2ODE ALF GDP 9.04977
278 4NON GDP 9.04977
279 6B4K ANP 9.04977
280 1YTM ATP 9.04977
281 4OHY ANP 9.04977
282 4DDY DN6 9.04977
283 4LPS GDP 9.50226
284 1G3Q ADP 9.50226
285 1ION ADP 9.50226
286 1B0U ATP 9.50226
287 2WJH GDP 9.63855
288 2WJH FLC 9.63855
289 1SVK ALF GDP 9.95475
290 1BH2 GSP 9.95475
291 5H7K GDP 9.95475
292 5H7J GCP 9.95475
293 2WHX ADP 9.95475
294 2JLR ANP 9.95475
295 2YOH WMJ 10
296 3U6B GDP 10.4072
297 2BVN GNP 10.4072
298 1D8T GDP 10.4072
299 5JBQ GDP 10.4072
300 4P3Y GDP 10.4072
301 4G5G GDP 10.4072
302 3U6K GDP 10.4072
303 2GDJ ANP 10.4072
304 2WJG GDP 10.6383
305 5H68 AGS 10.8597
306 1X6V ADP 11.3122
307 1AKY AP5 11.3636
308 1M7G ADX 11.3744
309 1M7G AV2 11.3744
310 1M7G ADP 11.3744
311 2VOH CIT 11.465
312 2RGX AP5 11.6505
313 5W75 GDP 11.7647
314 1RJ9 GCP 11.7647
315 3DEF GDP 11.7647
316 2IYL GDP 11.7647
317 2XT3 ADP 11.7647
318 3ZFD ANP 11.7647
319 2NCD ADP 11.7647
320 2VVG ADP 11.7647
321 1KO8 6PG 11.7647
322 2AWN ADP 11.7647
323 2XAU ADP 11.7647
324 1OS1 PYR 11.7647
325 1OS1 ATP 11.7647
326 4XGU ADP 11.7647
327 3RLF ANP 11.7647
328 1SQ5 ADP 11.7647
329 3EZ2 ADP 11.7647
330 1D2N ANP 11.7647
331 5YF1 8V0 11.7647
332 5YF1 SFG 11.7647
333 4A4Z ANP 11.7647
334 3TMK T5A 12.037
335 5H67 ATP 12.0603
336 1H65 GDP 12.2172
337 4NE2 SH2 12.2172
338 4NE2 ADP 12.2172
339 5UIV ADP 12.2172
340 1NRJ GTP 12.6582
341 5HCN GCP 12.6697
342 1T5C ADP 12.6697
343 2O0J ADP 13.1222
344 1TQ4 GDP 13.5747
345 4E03 ADP 14.0777
346 4JLS 3ZE 14.4737
347 4ZKD GDP 14.7059
348 5CK5 GDP 14.7059
349 5GOE GDP 14.7059
350 1FQK GDP 14.7059
351 1LVG ADP 14.7059
352 4TMZ GSP 14.7059
353 1FQJ GDP 14.7059
354 5TSH ADP 14.7059
355 5TSH ANP 14.7059
356 5IRN ADP 14.7059
357 1F9V ADP 14.7059
358 5BN3 ADP 14.7059
359 6A20 ADP 14.7059
360 4YMU ATP 14.7059
361 4U00 ADP 14.7059
362 5ZBR ANP 14.7059
363 1G6O ADP 14.7059
364 1OXV ANP 14.7059
365 1L2T ATP 14.7059
366 3NHB ADP 14.7059
367 1Z83 AP5 14.7059
368 5XDR ADP 14.7059
369 3FVQ ATP 14.7059
370 1UJ2 ADP 14.7059
371 5VHC BEF ADP 14.7059
372 1UJ2 C5P 14.7059
373 5M7P ADP 14.7059
374 1QHG ATP 14.7059
375 1FQJ ALF 14.7059
376 5C9P FUC 14.7059
377 1QHH ATP 14.7059
378 3ITJ CIT 14.7059
379 1TKB N1T 14.7059
380 1ME8 RVP 14.7059
381 1OJ4 ANP 14.7059
382 1Y3A GDP 15.3846
383 2OM2 GDP 15.3846
384 4YDS ATP 16.2896
385 2ZTS ADP 17.1315
386 1WDT GTP 17.1946
387 1IWE IMP 17.1946
388 5M04 GDP 17.6471
389 6CRK GDP 17.6471
390 1GOT GDP 17.6471
391 1GP2 GDP 17.6471
392 5KDO GDP 17.6471
393 4HI0 GDP 17.6471
394 5KSP GDP 17.6471
395 5KSZ GCP 17.6471
396 3ZQ6 ADP ALF 17.6471
397 3IO3 ADP 17.6471
398 4QM7 GTP 17.6471
399 2QZ4 ADP 17.6471
400 1RRC ADP 17.6471
401 1F5N GNP 17.6471
402 5J1S ATP 17.6471
403 2B8W ALF 5GP 17.6471
404 5Y6N ADP 17.6471
405 3B7G ANP 17.6471
406 2ORV 4TA 17.6471
407 3BFX A3P 17.6471
408 3RC3 ANP 17.6471
409 1OYY AGS 17.6471
410 6ECT SAM 17.6471
411 1S7N COA 17.6471
412 5LV1 78T 17.6471
413 3KLL MAL 17.6471
414 3IIJ ADP 18.8889
415 5HR5 ADP 19.0045
416 2X77 GDP 19.5767
417 2XTN GTP 20.5882
418 1NJF ADP 20.5882
419 1NJF AGS 20.5882
420 1W7J ADP BEF 20.5882
421 1Z6T ADP 20.5882
422 4OI4 ATP 20.5882
423 2ZE7 AMP 20.5882
424 2ZE7 DST 20.5882
425 2A2C NG1 20.5882
426 2A2C ADP 20.5882
427 2Z5F A3P 20.5882
428 3QVV A3P 20.5882
429 3QVV 3QV 20.5882
430 4M9Q GNP 20.8145
431 3DOE GTP 20.8333
432 2KIN ADP 21
433 1UPT GTP 21.0526
434 3AQ4 GDP 21.1957
435 1KSH GDP 21.5054
436 1F6B GDP 21.7172
437 1MKY GDP 21.7195
438 1MR3 G3D 22.0994
439 1HTW ADP 22.1519
440 2J59 GTP 22.2892
441 1O3Y GTP 22.2892
442 1J2J GTP 22.2892
443 4YLG GDP 22.5434
444 5W76 GDP 22.6244
445 2WIC GNP 23.0769
446 4R98 GNH 23.0769
447 1RE0 GDP 23.1707
448 1S9D GDP 23.1707
449 5L3S GNP 23.5294
450 5L3W GDP 23.5294
451 2GKS ADP 23.5294
452 2R4V GSH 23.5294
453 4PPF FLC 23.5294
454 4PJ3 ANP 23.5294
455 5X62 SAH 23.5294
456 3R96 AMP 23.5294
457 3R96 ACO 23.5294
458 4KAX GTP 23.6686
459 2A5F GTP 24
460 4DCT GDP 24.4344
461 3PCR GTP 24.6914
462 1M2O GNP 25.2632
463 3N5C GDP 25.3086
464 2W83 GTP 25.4545
465 3A1S GDP 25.7919
466 1PUJ GNP 26.4706
467 4PC3 GDP 26.4706
468 4WZA ACP 26.4706
469 4WZA ADP 26.4706
470 1FP6 ADP 26.4706
471 4ZG4 VO4 ADP 26.4706
472 1KK8 BEF ADP 26.4706
473 4X8O AP5 26.4706
474 5N69 ADP 26.4706
475 1K6M AGS 26.4706
476 1B7T ADP 26.4706
477 4JLV ADP 26.4706
478 4HUT ATP 26.4706
479 2V7Q ATP 28
480 2CK3 ANP 28
481 2CK3 ADP 28
482 2V7Q ADP 28
483 2WKQ GTP 28.0543
484 4ZI2 GNP 28.4211
485 4GOJ GNP 28.5714
486 2QTV GNP 28.7425
487 2GJ8 ALF GDP 29.0698
488 2J0V GDP 29.2453
489 1FZQ GDP 29.2818
490 5JCP GDP ALF 29.4118
491 5FHD ADP ALF 29.4118
492 1JJ7 ADP 29.4118
493 5FTB ANP 29.4118
494 2JK0 ASP 29.4118
495 3V2U ATP 29.4118
496 1YZG GDP 29.6089
497 1ZJ6 G3D 30.4813
498 3T12 GDP ALF 30.8081
499 3T1O GDP 30.8081
500 3REF GDP 30.9278
501 1GWN GTP 31.2195
502 3T5G GDP 31.4917
503 1RYH GNP 32.0197
504 6BSX E7S 32.0225
505 6BSX GDP 32.0225
506 4BAS GNP 32.1608
507 5KUT GDP 32.3529
508 2OG2 MLI 32.3529
509 1E96 GTP 32.8125
510 1DS6 GDP 32.8125
511 1I4D GDP 33.3333
512 2W2X GSP 33.5135
513 1OW3 GDP 33.6788
514 4V0K GDP 33.7278
515 2GCN GDP 33.8308
516 2GCO GNP 33.8308
517 1NF3 GNP 33.8462
518 5DI3 GNP 34.0541
519 5XC5 GTP 34.0909
520 1A4R GNH 34.555
521 1A4R GDP 34.555
522 4D0N GDP 34.5946
523 6BCA GSP 34.5946
524 6BCB GSP 34.5946
525 6BC0 GSP 34.5946
526 1CXZ GSP 34.6154
527 1M7B GTP 34.7826
528 2NGR GDP 35.0785
529 1GRN GDP 35.0785
530 4ITR GDP 35.0785
531 1GRN AF3 35.0785
532 3LXR GDP 35.1351
533 5HPY GDP 35.1351
534 2WMO GTP 35.2632
535 4XTR ATP 35.2941
536 4XVU ATP 35.2941
537 4XTR ADP 35.2941
538 3ZIA ATP 35.2941
539 3ZIA ADP 35.2941
540 1G4U GDP 35.3261
541 1G4U AF3 35.3261
542 4XOI GTP 35.5556
543 2FJU GSP 35.9551
544 4XSH GSP 36.3129
545 1KMQ GNP 36.413
546 4YC7 GNP 36.4641
547 1MH1 GNP 36.5591
548 5IRC GDP 36.5591
549 1TX4 ALF GDP 36.7232
550 4DID GDP 37.3057
551 1HE1 GDP 37.5
552 1HE1 AF3 37.5
553 3SBD GNP 37.9679
554 1R4A GNP 38.7879
555 1ZD9 GDP 38.8298
556 5EE5 GTP 39.1813
557 2G77 GDP 39.899
558 2G77 AF3 39.899
559 4DKX GDP 41.2037
560 2BCG GDP 41.7476
561 5OCG GNP 41.7989
562 4U5X GNP 42.1348
563 2F9L GDP 42.2111
564 1OIX GDP 42.4084
565 3CPJ GDP 42.5339
566 5UQW GDP 42.8571
567 1OIV GDP 42.9319
568 5TAR GDP 43.2432
569 5TB5 GDP 43.2432
570 5SZH GNP 43.3498
571 2ZEJ GDP 44.0217
572 2CJW GDP 44.2708
573 2A9K GDP 44.385
574 5JCZ GDP 45.2514
575 5UPK GNP 45.4054
576 1Z06 GNP 45.5026
577 3BC1 GNP 45.641
578 6FA4 GNP 45.6647
579 2EW1 GNP 45.7711
580 1VG8 GNP 45.8937
581 1VG0 GDP 45.8937
582 3Q85 GNP 46.1538
583 4LX0 BEF GDP 46.3277
584 1YZN GNP 46.4865
585 3RWO GDP 46.4865
586 2HV8 GTP 46.5116
587 2A5J GDP 46.5969
588 4K81 GTP 46.7836
589 2C5L GTP 46.8208
590 1ZC3 GNP 46.8571
591 5LEF GTP 47.1204
592 2D7C GTP 47.3054
593 5O2T GSP 47.3373
594 1UAD GNP 47.4286
595 5WLB GNP 47.5904
596 3Q72 GNP 47.5904
597 1CLU DBG 48.1928
598 2UZI GTP 48.1928
599 5E95 GDP 48.2143
600 1G16 GDP 48.2353
601 1X1R GDP 48.3146
602 3TKL GTP 48.4694
603 6BVL GNP 48.503
604 6D5L GNP 48.503
605 6BVI GNP 48.503
606 6BVM GNP 48.503
607 6BVJ GNP 48.503
608 6D59 GNP 48.503
609 6BVK GNP 48.503
610 6D56 GNP 48.503
611 6D5J GNP 48.503
612 6D5H GNP 48.503
613 6D5E GNP 48.503
614 6D55 GNP 48.503
615 1LFD GNP 48.503
616 6D5V GNP 48.503
617 6D5G GNP 48.503
618 6D5M GNP 48.503
619 4C4P GNP 48.5549
620 5OEC GDP 48.6339
621 3KUD GDP 48.7952
622 1WQ1 GDP 48.7952
623 1NVV GNP 48.7952
624 1WQ1 AF3 48.7952
625 1U8Z GDP 48.8095
626 1Z0J GTP 48.8235
627 5O74 GDP 48.8889
628 1KY3 GDP 48.9011
629 1YVD GNP 49.1124
630 3DDC GNP 49.3976
631 2HT6 GDP 49.4253
632 2FFQ GSP 49.7076
633 3QBT GNP 50
634 1Z0A GDP 50
635 4LHW GNP 50
636 4KVG GTP 50
637 3TNF GNP 50
Pocket No.: 2; Query (leader) PDB : 3GJ5; Ligand: GDP; Similar sites found with APoc: 34
This union binding pocket(no: 2) in the query (biounit: 3gj5.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 1KEV NDP 2.71493
2 2VZZ SCA 2.75229
3 2JEV NHQ 2.87356
4 2B4D COA 2.92398
5 2B4B COA 2.92398
6 2PWY SAH 3.16742
7 3SXN COA 3.16742
8 3KC1 2T6 3.61991
9 3WDM ADN 3.61991
10 1X8J A3P 4.0724
11 3L6C MLI 4.52489
12 5WQP NCA 4.52489
13 3MWL 8OX 4.83092
14 2VBQ BSJ 4.84848
15 6DIO NAD 4.97738
16 6F3M NAD 4.97738
17 4X1Z FUC GAL NDG 5.88235
18 3MGB PAP 5.88235
19 3WR7 COA 5.88235
20 4AVB ACO 6.78733
21 4Z0G 5GP 6.78733
22 4A62 ANP 9.04977
23 5O3Q CMP 10
24 4ZY1 4U5 10.4072
25 4Z87 GDP 11.7647
26 5K04 COA 14.0271
27 5TVJ COA 14.7059
28 5TVJ 7LF 14.7059
29 1FFU CDP 14.7059
30 4ITM ATP 23.5294
31 2BFR ADP 23.5294
32 1Q19 SSC 32.3529
33 1J99 AND 35.2941
34 1T3D CYS 41.1765
35 4CZG ADP 50
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