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Receptor
PDB id Resolution Class Description Source Keywords
3GJ4 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF3 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
C:302;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
C:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
ZN B:300;
D:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ4 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF3 COMPLEX HOMO SAPIENS G PROTEIN GDP RAN NUP153 NUCLEAR PORE ZINC FINGER ACETYLATION CYTOPLASM GTP-BINDING HOST-VIRUS INTERACTION ISOPEPTIDE BOND NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTUBL CONJUGATION DNA-BINDING METAL-BINDING MRNA TRANSPORT NUCLEAR PORE COMPLEX TRANSLOCATION ZINC ZINC-FINGER TRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3GJ5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 3CH5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3GJ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ4; Ligand: GDP; Similar sites found with APoc: 648
This union binding pocket(no: 1) in the query (biounit: 3gj4.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4D81 ADP None
2 1S7N COA 1.0989
3 4M7V NAP 1.14286
4 1I0B PEL 1.35747
5 2V2V V12 1.35747
6 4NU0 AP5 1.38249
7 3DKP ADP 1.80995
8 3IUY AMP 1.80995
9 3L9W AMP 1.80995
10 3L9W GSH 1.80995
11 2X7I CIT 1.80995
12 5XKT GNP 2
13 2FNA ADP 2.26244
14 5WRJ A3P 2.26244
15 5WRI A3P 2.26244
16 4UTG ANP 2.26244
17 2ZJ5 ADP 2.26244
18 3ITJ CIT 2.26244
19 2PI8 NAG NAG NAG NAG NAG NAG 2.26244
20 5TVJ COA 2.26244
21 5TVJ 7LF 2.26244
22 5KSZ GCP 2.71493
23 3ZQ6 ADP ALF 2.71493
24 2WOJ ADP ALF 2.71493
25 3ZS9 ADP ALF 2.71493
26 1GOJ ADP 2.71493
27 3BFV ADP 2.71493
28 5K5Z ANP 2.71493
29 1D2N ANP 2.71493
30 1J99 AND 2.71493
31 4Z24 FAD 2.71493
32 1KEV NDP 2.71493
33 2JEV NHQ 2.87356
34 2B4D COA 2.92398
35 4J0Q GDP 3.16742
36 5I34 GDP 3.16742
37 2ZR9 DTP 3.16742
38 4IOK XPO 3.16742
39 4IOK ADP 3.16742
40 4PPF FLC 3.16742
41 2GK6 ADP 3.16742
42 2ZPA ADP 3.16742
43 5NM7 GLY 3.16742
44 1AQU A3P 3.16742
45 3QVV A3P 3.16742
46 3QVV 3QV 3.16742
47 1OJ4 ANP 3.16742
48 2PWY SAH 3.16742
49 5H4S RAM 3.16742
50 3SXN COA 3.16742
51 2OFW ADX 3.36538
52 1SVI GDP 3.58974
53 2Q2Y ADP 3.61991
54 2Q2Y MKR 3.61991
55 2VVG ADP 3.61991
56 3P4X ADP 3.61991
57 6B8B ADP 3.61991
58 3QF7 ANP 3.61991
59 1SVM ATP 3.61991
60 1DAK DPU 3.61991
61 1DAK ADP 3.61991
62 4BFW ZVW 3.61991
63 5Y6N ADP 3.61991
64 2D7D ADP 3.61991
65 6H5E ANP 3.61991
66 3WDM ADN 3.61991
67 2V5K OXM 3.83275
68 1JJV ATP 3.8835
69 2PEZ GGZ 3.91061
70 2PEZ DAT 3.91061
71 2QG6 NMN 4.0201
72 2RCN GDP 4.0724
73 3WXM GTP 4.0724
74 3WY9 GDP 4.0724
75 3VMF GTP 4.0724
76 3TK1 GDP 4.0724
77 2C78 GNP 4.0724
78 3WYA GDP 4.0724
79 5W7Q GDP 4.0724
80 2C77 GNP 4.0724
81 5W75 GDP 4.0724
82 1P72 ADP 4.0724
83 5G3Y ADP 4.0724
84 2IXE ATP 4.0724
85 4TL6 ANP 4.0724
86 1JI0 ATP 4.0724
87 5G41 AP5 4.0724
88 4WZ6 ATP 4.0724
89 2FAH GDP 4.0724
90 4YJ1 ADP 4.0724
91 1XP8 AGS 4.0724
92 4FCW ADP 4.0724
93 4LJ9 ACP 4.0724
94 4ITM ATP 4.0724
95 3BER AMP 4.0724
96 5LLB 6YZ 4.0724
97 2D2F ADP 4.0724
98 1BXG NAD 4.0724
99 5MEX PAP 4.0724
100 1X8J A3P 4.0724
101 1ZIN AP5 4.14747
102 4MKF AP5 4.14747
103 3FB4 AP5 4.16667
104 1XX6 ADP 4.18848
105 4TMK T5A 4.22535
106 4QRH 0O2 4.28571
107 4KOT CE3 4.32099
108 2F3R G5P 4.34783
109 1XEX ATP 4.3956
110 3KTA AP5 4.3956
111 4LC1 GDP 4.52489
112 3B5J 12D 4.52489
113 3ZFD ANP 4.52489
114 1E2K TMC 4.52489
115 1NJF AGS 4.52489
116 5ZXD ATP 4.52489
117 1L2T ATP 4.52489
118 3EWA ANP 4.52489
119 3KJI ADP 4.52489
120 1K6M AGS 4.52489
121 2OBM ADP 4.52489
122 5M7P ADP 4.52489
123 1R0X ATP 4.52489
124 1NJF ADP 4.52489
125 4KBF AMP 4.52489
126 5BYK A3P 4.52489
127 5BYK OAQ 4.52489
128 6ECT SAM 4.52489
129 1S3G AP5 4.60829
130 4X8O AP5 4.6729
131 3UYW TAU 4.6729
132 4CVN ADP 4.71204
133 3MWL 8OX 4.83092
134 2VBQ BSJ 4.84848
135 2IL4 COA 4.85437
136 4WOP CTP 4.88889
137 2CDN ADP 4.97512
138 5L3W GDP 4.97738
139 1IHU ADP 4.97738
140 1IHU AF3 4.97738
141 2QEN ADP 4.97738
142 3HU3 AGS 4.97738
143 3A4M ADP 4.97738
144 2OZE AGS 4.97738
145 4HSE ADP 4.97738
146 1G6H ADP 4.97738
147 1OXV ANP 4.97738
148 1G41 ADP 4.97738
149 1YQT ADP 4.97738
150 2XAU ADP 4.97738
151 2AWN ADP 4.97738
152 3NHB ADP 4.97738
153 3FVQ ATP 4.97738
154 1OFH ADP 4.97738
155 5YV5 ADP 4.97738
156 1NST A3P 4.97738
157 4XTR ADP 5.06912
158 4XTR ATP 5.06912
159 4XVU ATP 5.06912
160 4MKG AP5 5.06912
161 1KO8 6PG 5.14286
162 5BQ5 ADP BEF 5.29101
163 3MD0 GDP 5.42986
164 5VHC BEF ADP 5.42986
165 4IDN GNP 5.42986
166 1FNN ADP 5.42986
167 1OYY AGS 5.42986
168 2A2C ADP 5.42986
169 2A2C NG1 5.42986
170 1Q19 SSC 5.42986
171 5GVR LMR 5.42986
172 2QQ0 THM 5.43478
173 2QQ0 ANP 5.43478
174 2QQ0 TMP 5.43478
175 2QQ0 ADP 5.43478
176 2W58 ADP 5.44554
177 1VHT BA3 5.50459
178 5ZB0 ADP 5.55556
179 5ZB0 TYD 5.55556
180 4KFU ACP 5.66038
181 4R2I ANP 5.71429
182 1WF3 GNP 5.88235
183 3COB ADP 5.88235
184 4KVA GTP 5.88235
185 4H1V GNP 5.88235
186 3E70 GDP 5.88235
187 1F9V ADP 5.88235
188 3T34 GDP 5.88235
189 3H4S ADP 5.88235
190 4FRZ ADP 5.88235
191 1RRC ADP 5.88235
192 3QKT ANP 5.88235
193 3QXC ATP 5.88235
194 2PZE ATP 5.88235
195 3B7G ANP 5.88235
196 2DPY ADP 5.88235
197 6DEF GCP 5.88235
198 2JK0 ASP 5.88235
199 4X1Z FUC GAL NDG 5.88235
200 3C2O NTM 5.88235
201 1UKZ ADP 5.91133
202 1Y63 ADP 5.97826
203 1NN5 2DT 6.04651
204 1NN5 ANP 6.04651
205 2NCD ADP 6.06061
206 2J5V PCA 6.06061
207 2VZZ SCA 6.06061
208 1QF9 C5P 6.18557
209 1QF9 ADP 6.18557
210 1QF9 ALF 6.18557
211 1YRB GDP 6.33484
212 2XTZ GSP 6.33484
213 6G14 G4P 6.33484
214 1PUJ GNP 6.33484
215 4U00 ADP 6.33484
216 5U32 GDP 6.33484
217 3RLF ANP 6.33484
218 3Q9L ATP 6.33484
219 5IFS ADP 6.33484
220 2PL3 ADP 6.33484
221 1OE0 TTP 6.33484
222 4CZG ADP 6.33484
223 2FH5 GTP 6.54206
224 1GXU 2HP 6.59341
225 4Q1A UDP 6.78571
226 4Q1A 2XZ 6.78571
227 1TAD GDP 6.78733
228 1TAD ALF 6.78733
229 3CNL GNP 6.78733
230 1GOT GDP 6.78733
231 5L3S GNP 6.78733
232 5L3V GDP 6.78733
233 3FWY ADP 6.78733
234 6CS8 F9Y 6.78733
235 2ZFI ADP 6.78733
236 1CR1 TTP 6.78733
237 1OS1 ATP 6.78733
238 1OS1 PYR 6.78733
239 4JLV ADP 6.78733
240 4GOX A3P 6.78733
241 5VGR GDP 6.78733
242 4ZNL BEF ADP 6.78733
243 1T3D CYS 6.78733
244 4AVB ACO 6.78733
245 5MVR ADP 6.79012
246 4TTQ ATP 6.97674
247 2CE7 ADP 7.23982
248 2GKS ADP 7.23982
249 2FSH ANP 7.23982
250 2B8T THM 7.23982
251 1VKJ A3P 7.23982
252 3H86 AP5 7.29167
253 4HUT ATP 7.32984
254 3W5J GDP 7.35294
255 4BQS ADP 7.38636
256 4BQS K2Q 7.38636
257 3CX8 GSP 7.69231
258 3AB3 GDP 7.69231
259 1ZCB GDP 7.69231
260 3VX3 ADP 7.69231
261 5L3R GCP 7.69231
262 6C90 ADP 7.69231
263 3B9Q MLI 7.69231
264 2OG2 MLI 7.69231
265 1Q20 A3P 7.69231
266 1Q20 PLO 7.69231
267 5KSP GDP 7.89474
268 5KUT GDP 7.93651
269 3UIE ANP 8
270 1CS4 GSP 8.1448
271 5IRR GSP 8.1448
272 5BN3 ADP 8.1448
273 2QZ4 ADP 8.1448
274 4ZDJ UTP 8.1448
275 4YP5 NAP 8.28729
276 5X62 SAH 8.59729
277 3PQC GDP 8.71795
278 4QM7 GTP 8.77193
279 2JAQ DCP 8.78049
280 4NON GDP 9.04977
281 2ODE ALF GDP 9.04977
282 6AU6 GDP 9.04977
283 1YTM ATP 9.04977
284 4OHY ANP 9.04977
285 4ZKD GDP 9.09091
286 1W0J ADP 9.09091
287 1ZUI SKM 9.09091
288 4PX9 ADP 9.09091
289 1W0J ADP BEF 9.09091
290 5I0H ADP BEF 9.09091
291 5C9P FUC 9.09091
292 2I4I AMP 9.09091
293 1H74 ADP 9.09091
294 3MGB PAP 9.09091
295 1G3Q ADP 9.50226
296 1ION ADP 9.50226
297 2WJH GDP 9.63855
298 2WJH FLC 9.63855
299 1BH2 GSP 9.95475
300 5H7K GDP 9.95475
301 5H7J GCP 9.95475
302 5TSH ADP 9.95475
303 2WHX ADP 9.95475
304 5TSH ANP 9.95475
305 2JLR ANP 9.95475
306 1SVK ALF GDP 9.95475
307 1YBH FAD 9.95475
308 2YOH WMJ 10
309 3U6B GDP 10.4072
310 2BVN GNP 10.4072
311 1D8T GDP 10.4072
312 5JBQ GDP 10.4072
313 4G5G GDP 10.4072
314 4P3Y GDP 10.4072
315 3U6K GDP 10.4072
316 4YMU ATP 10.4072
317 2GDJ ANP 10.4072
318 4ZY1 4U5 10.4072
319 2WJG GDP 10.6383
320 5H68 AGS 10.8597
321 1FQK GDP 10.8844
322 1FQJ GDP 10.8844
323 1LVG ADP 11.1111
324 3ZIA ATP 11.1111
325 3ZIA ADP 11.1111
326 1GP2 GDP 11.3122
327 5KDO GDP 11.3122
328 1X6V ADP 11.3122
329 1AKY AP5 11.3636
330 1M7G ADX 11.3744
331 1M7G AV2 11.3744
332 1M7G ADP 11.3744
333 2RGX AP5 11.6505
334 5GOE GDP 11.7647
335 2XT3 ADP 11.7647
336 1RJ9 GCP 11.7647
337 3DEF GDP 11.7647
338 2IYL GDP 11.7647
339 5FHD ADP ALF 11.7647
340 5FTB ANP 11.7647
341 1SQ5 ADP 11.7647
342 2Z5F A3P 11.7647
343 3TMK T5A 12.037
344 5H67 ATP 12.0603
345 3EC1 GDP 12.1212
346 4HI0 GDP 12.1212
347 4V03 ADP 12.1212
348 2C9O ADP 12.1212
349 5LTJ ADP 12.1212
350 2CBZ ATP 12.1212
351 4AG5 ADP 12.1212
352 1G6O ADP 12.1212
353 5LTJ BEF 12.1212
354 4PJ3 ANP 12.1212
355 2GMV UN8 12.1212
356 2GMV PEP 12.1212
357 1NHX FTB 12.1212
358 1NHX PEP 12.1212
359 3V2U ATP 12.1212
360 5YF1 SFG 12.1212
361 5YF1 8V0 12.1212
362 4EUE NAI 12.1212
363 3IO3 ADP 12.2172
364 4NE2 SH2 12.2172
365 4NE2 ADP 12.2172
366 5UIV ADP 12.2172
367 1H65 GDP 12.2172
368 1NRJ GTP 12.6582
369 5HCN GCP 12.6697
370 4TMZ GSP 12.6697
371 1T5C ADP 12.6697
372 2O0J ADP 13.1222
373 1TQ4 GDP 13.5747
374 1JJ7 ADP 14.0271
375 4E03 ADP 14.0777
376 5M04 GDP 14.4796
377 5M67 ADE 14.4796
378 4PC3 GDP 15.1515
379 4WZA ADP 15.1515
380 4WZA ACP 15.1515
381 3FKQ ATP 15.1515
382 3DC4 ADP 15.1515
383 1V8K ANP 15.1515
384 1XKV ATP 15.1515
385 3LRE ADP 15.1515
386 1P9B GDP 15.1515
387 2BIF SIN 15.1515
388 2BIF ANP 15.1515
389 4IHQ ADP 15.1515
390 4OI4 ATP 15.1515
391 4GBM A3P 15.1515
392 5TIV A3P 15.1515
393 6AIC AMP 15.1515
394 5K2M ADP 15.1515
395 1TKB N1T 15.1515
396 1Y3A GDP 15.3846
397 6CRK GDP 15.3846
398 2OM2 GDP 15.3846
399 4YDS ATP 16.2896
400 5J1S ATP 17.0732
401 2ZTS ADP 17.1315
402 1WDT GTP 17.1946
403 1IWE IMP 17.1946
404 4LPS GDP 18.1818
405 2Y65 ADP 18.1818
406 4P4T GDP 18.1818
407 5J1J ANP 18.1818
408 4LYA ATP 18.1818
409 6A20 ADP 18.1818
410 1BG2 ADP 18.1818
411 4ZG4 VO4 ADP 18.1818
412 2VB6 ADP BEF 18.1818
413 4PFO ADP 18.1818
414 5X40 ACP 18.1818
415 1Z83 AP5 18.1818
416 4R43 GDP 18.1818
417 5ZBR ANP 18.1818
418 6FAA ADP 18.1818
419 2HF9 GSP 18.1818
420 4XGU ADP 18.1818
421 5MZN ADP 18.1818
422 1Z6T ADP 18.1818
423 2ZE7 AMP 18.1818
424 2ZE7 DST 18.1818
425 3BFX A3P 18.1818
426 4JZ8 CIT 18.1818
427 3RC3 ANP 18.1818
428 4DDY DN6 18.1818
429 5K04 COA 18.1818
430 5WQP NCA 18.1818
431 1W7J ADP BEF 18.552
432 3IIJ ADP 18.8889
433 5HR5 ADP 19.0045
434 2X77 GDP 19.5767
435 3DOE GTP 20.8333
436 2KIN ADP 21
437 1UPT GTP 21.0526
438 3AQ4 GDP 21.1957
439 4M9Q GNP 21.2121
440 4RZ3 ADP 21.2121
441 1B0U ATP 21.2121
442 1LVK MNT BEF 21.2121
443 1KK8 BEF ADP 21.2121
444 1F5N GNP 21.2121
445 5N69 ADP 21.2121
446 5XDR ADP 21.2121
447 1R6B ADP 21.2121
448 2B8W ALF 5GP 21.2121
449 1B7T ADP 21.2121
450 4YS0 ADP 21.2121
451 1QHH ATP 21.2121
452 4UXH T5A 21.2121
453 2JJK R15 21.2121
454 3KC1 2T6 21.2121
455 1QHG ATP 21.2121
456 2VOH CIT 21.2121
457 6DIO NAD 21.2121
458 1FFU CDP 21.2121
459 1KSH GDP 21.5054
460 1F6B GDP 21.7172
461 1MR3 G3D 22.0994
462 1HTW ADP 22.1519
463 2J59 GTP 22.2892
464 1O3Y GTP 22.2892
465 1J2J GTP 22.2892
466 4YLG GDP 22.5434
467 5W76 GDP 22.6244
468 2WIC GNP 23.0769
469 4R98 GNH 23.0769
470 1RE0 GDP 23.1707
471 1S9D GDP 23.1707
472 2R4V GSH 23.5294
473 4KAX GTP 23.6686
474 2A5F GTP 24
475 1MKY GDP 24.2424
476 5CK5 GDP 24.2424
477 2XTN GTP 24.2424
478 5WC2 ADP 24.2424
479 1FP6 ADP 24.2424
480 6B4K ANP 24.2424
481 5AK0 8V1 24.2424
482 1XMV ADP 24.2424
483 1UJ2 ADP 24.2424
484 1UJ2 C5P 24.2424
485 4A4Z ANP 24.2424
486 4Z87 GDP 24.2424
487 1G3M PCQ 24.2424
488 1G3M A3P 24.2424
489 2ZPT A3P 24.2424
490 3R96 AMP 24.2424
491 3R96 ACO 24.2424
492 4DCT GDP 24.4344
493 3PCR GTP 24.6914
494 1M2O GNP 25.2632
495 3N5C GDP 25.3086
496 2W83 GTP 25.4545
497 3A1S GDP 25.7919
498 1QF5 RPL 27.2727
499 1QF5 GDP 27.2727
500 5LB3 ADP 27.2727
501 3EZ2 ADP 27.2727
502 3TBK ANP 27.2727
503 2V7Q ATP 28
504 2CK3 ANP 28
505 2CK3 ADP 28
506 2V7Q ADP 28
507 2WKQ GTP 28.0543
508 4ZI2 GNP 28.4211
509 4GOJ GNP 28.5714
510 2QTV GNP 28.7425
511 2GJ8 ALF GDP 29.0698
512 2J0V GDP 29.2453
513 1FZQ GDP 29.2818
514 5JCP GDP ALF 29.4118
515 1YZG GDP 29.6089
516 2IS6 ADP 30.303
517 1ZJ6 G3D 30.4813
518 3T12 GDP ALF 30.8081
519 3T1O GDP 30.8081
520 3REF GDP 30.9278
521 1GWN GTP 31.2195
522 3T5G GDP 31.4917
523 1RYH GNP 32.0197
524 6BSX GDP 32.0225
525 6BSX E7S 32.0225
526 4BAS GNP 32.1608
527 1DS6 GDP 32.8125
528 1E96 GTP 32.8125
529 1I4D GDP 33.3333
530 5IRN ADP 33.3333
531 4WHZ 3NL 33.3333
532 2W2X GSP 33.5135
533 1OW3 GDP 33.6788
534 4V0K GDP 33.7278
535 2GCN GDP 33.8308
536 2GCO GNP 33.8308
537 1NF3 GNP 33.8462
538 5DI3 GNP 34.0541
539 5XC5 GTP 34.0909
540 1A4R GNH 34.555
541 1A4R GDP 34.555
542 4D0N GDP 34.5946
543 6BCB GSP 34.5946
544 6BCA GSP 34.5946
545 6BC0 GSP 34.5946
546 1CXZ GSP 34.6154
547 1M7B GTP 34.7826
548 2NGR GDP 35.0785
549 1GRN GDP 35.0785
550 4ITR GDP 35.0785
551 3LXR GDP 35.1351
552 5HPY GDP 35.1351
553 2WMO GTP 35.2632
554 1G4U GDP 35.3261
555 4XOI GTP 35.5556
556 2FJU GSP 35.9551
557 4XSH GSP 36.3129
558 1W4R TTP 36.3636
559 2ORV 4TA 36.3636
560 5E5U MLI 36.3636
561 1KMQ GNP 36.413
562 4YC7 GNP 36.4641
563 1MH1 GNP 36.5591
564 5IRC GDP 36.5591
565 1TX4 ALF GDP 36.7232
566 4DID GDP 37.3057
567 1HE1 GDP 37.5
568 1HE1 AF3 37.5
569 3SBD GNP 37.9679
570 1R4A GNP 38.7879
571 1ZD9 GDP 38.8298
572 5EE5 GTP 39.1813
573 2G77 GDP 39.899
574 2G77 AF3 39.899
575 4DKX GDP 41.2037
576 2BCG GDP 41.7476
577 5OCG GNP 41.7989
578 4U5X GNP 42.1348
579 2F9L GDP 42.2111
580 1OIX GDP 42.4084
581 3CPJ GDP 42.5339
582 5UQW GDP 42.8571
583 1OIV GDP 42.9319
584 5TAR GDP 43.2432
585 5TB5 GDP 43.2432
586 5SZH GNP 43.3498
587 2ZEJ GDP 44.0217
588 2CJW GDP 44.2708
589 2A9K GDP 44.385
590 5JCZ GDP 45.2514
591 5UPK GNP 45.4054
592 1Z06 GNP 45.5026
593 3BC1 GNP 45.641
594 6FA4 GNP 45.6647
595 2EW1 GNP 45.7711
596 1VG0 GDP 45.8937
597 1VG8 GNP 45.8937
598 3Q85 GNP 46.1538
599 4LX0 BEF GDP 46.3277
600 1YZN GNP 46.4865
601 3RWO GDP 46.4865
602 2HV8 GTP 46.5116
603 2A5J GDP 46.5969
604 4K81 GTP 46.7836
605 2C5L GTP 46.8208
606 1ZC3 GNP 46.8571
607 5LEF GTP 47.1204
608 2D7C GTP 47.3054
609 5O2T GSP 47.3373
610 1UAD GNP 47.4286
611 5WLB GNP 47.5904
612 3Q72 GNP 47.5904
613 2UZI GTP 48.1928
614 1CLU DBG 48.1928
615 5E95 GDP 48.2143
616 1G16 GDP 48.2353
617 1X1R GDP 48.3146
618 3TKL GTP 48.4694
619 6BVJ GNP 48.503
620 6D5L GNP 48.503
621 6D5J GNP 48.503
622 6D59 GNP 48.503
623 6D55 GNP 48.503
624 6D5H GNP 48.503
625 6BVL GNP 48.503
626 6BVM GNP 48.503
627 6D5E GNP 48.503
628 6BVI GNP 48.503
629 6D5V GNP 48.503
630 6BVK GNP 48.503
631 1LFD GNP 48.503
632 6D56 GNP 48.503
633 6D5G GNP 48.503
634 6D5M GNP 48.503
635 4C4P GNP 48.5549
636 5OEC GDP 48.6339
637 3KUD GDP 48.7952
638 1WQ1 GDP 48.7952
639 1NVV GNP 48.7952
640 1WQ1 AF3 48.7952
641 1U8Z GDP 48.8095
642 1Z0J GTP 48.8235
643 5O74 GDP 48.8889
644 1KY3 GDP 48.9011
645 1YVD GNP 49.1124
646 3DDC GNP 49.3976
647 2HT6 GDP 49.4253
648 2FFQ GSP 49.7076
649 3QBT GNP 50
650 4LHW GNP 50
651 4KVG GTP 50
652 1Z0A GDP 50
653 3TNF GNP 50
Pocket No.: 2; Query (leader) PDB : 3GJ4; Ligand: GDP; Similar sites found with APoc: 25
This union binding pocket(no: 2) in the query (biounit: 3gj4.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4M7V RAR 1.14286
2 1NV8 SAM 2.71493
3 1NV8 MEQ 2.71493
4 2F5X ASP 2.88462
5 1OBV FMN 3.5503
6 5J5R IMP 4.52489
7 5J5R 6G1 4.52489
8 2ZW5 COA 4.97738
9 1BO4 COA 5.35714
10 1A2C 34H LEU PRJ OAR 5.42986
11 5AHO TLA 5.88235
12 6EJI UD2 6.78733
13 3KLL MAL 7.69231
14 5BRT CH9 9.09091
15 1FQK ALF 10.8844
16 1FQJ ALF 10.8844
17 5AHM IMP 12.1212
18 4JLS 3ZE 14.4737
19 3G5N PB2 15.1515
20 1GTE FAD 15.1515
21 4AF0 IMP 15.1515
22 5T67 JHZ 18.1818
23 5GUD NDP 27.2727
24 5LV1 78T 30.303
25 1G4U AF3 35.3261
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