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Receptor
PDB id Resolution Class Description Source Keywords
3GJ0 1.48 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF HUMAN RANGDP HOMO SAPIENS G PROTEIN GDP ACETYLATION CYTOPLASM GTP-BINDING HOST- VIRUS INTERACTION NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTTRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:302;
B:217;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:301;
B:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GJ0 1.48 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF HUMAN RANGDP HOMO SAPIENS G PROTEIN GDP ACETYLATION CYTOPLASM GTP-BINDING HOST- VIRUS INTERACTION NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN POLYMORPHISM PROTEIN TRANSPORT TRANSPORTTRANSPORT PROTEIN
Ref.: CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING ZINC FINGER DOMAIN. J.MOL.BIOL. V. 391 375 2009
Members (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 5CIT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3GJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5CIW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1QG2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 5CJ2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 5CIQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3RAN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1QG4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1BYU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GJ0; Ligand: GDP; Similar sites found with APoc: 604
This union binding pocket(no: 1) in the query (biounit: 3gj0.bio2) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 1S7N COA 1.0989
2 2V2V V12 1.35747
3 4NU0 AP5 1.38249
4 4ZNL BEF ADP 1.80995
5 3DKP ADP 1.80995
6 3IUY AMP 1.80995
7 3BFX A3P 1.80995
8 5AHM IMP 1.80995
9 2X7I CIT 1.80995
10 3L9W AMP 1.80995
11 6AIC AMP 1.86916
12 5XKT GNP 2
13 1BG2 ADP 2.26244
14 4R43 GDP 2.26244
15 3DZD ADP 2.26244
16 4YS0 ADP 2.26244
17 2FNA ADP 2.26244
18 5WRI A3P 2.26244
19 5TIV A3P 2.26244
20 4UTG ANP 2.26244
21 3RC3 ANP 2.26244
22 1H74 ADP 2.26244
23 2ZJ5 ADP 2.26244
24 3ITJ CIT 2.26244
25 5TVJ COA 2.26244
26 5TVJ 7LF 2.26244
27 5XOY LYS 2.26244
28 2PI8 NAG NAG NAG NAG NAG NAG 2.26244
29 6G47 SIA 2.39234
30 3TK1 GDP 2.71493
31 1GOJ ADP 2.71493
32 5H7K GDP 2.71493
33 2Y65 ADP 2.71493
34 5KSZ GCP 2.71493
35 3ZQ6 ADP ALF 2.71493
36 3BFV ADP 2.71493
37 4PFO ADP 2.71493
38 2OBM ADP 2.71493
39 3BOS CDP 2.71493
40 2C9O ADP 2.71493
41 5WRJ A3P 2.71493
42 2ORV 4TA 2.71493
43 2VB6 ADP BEF 2.71493
44 1G3M PCQ 2.71493
45 1G3M A3P 2.71493
46 5K5Z ANP 2.71493
47 4Z87 GDP 2.71493
48 2ZPT A3P 2.71493
49 5EP2 AZU 2.71493
50 5K2M ADP 2.71493
51 1J99 AND 2.71493
52 2VZZ SCA 2.75229
53 2JEV NHQ 2.87356
54 2B4D COA 2.92398
55 2B4B COA 2.92398
56 1W4R TTP 3.07692
57 4J0Q GDP 3.16742
58 3WXM GTP 3.16742
59 2C78 GNP 3.16742
60 5W7Q GDP 3.16742
61 1SKQ GDP 3.16742
62 5W75 GDP 3.16742
63 6A20 ADP 3.16742
64 4PPF FLC 3.16742
65 2C77 GNP 3.16742
66 4V03 ADP 3.16742
67 1P72 ADP 3.16742
68 5I34 GDP 3.16742
69 2ZR9 DTP 3.16742
70 5ZBR ANP 3.16742
71 2HF9 GSP 3.16742
72 4IOK XPO 3.16742
73 4IOK ADP 3.16742
74 2GK6 ADP 3.16742
75 5J1J ANP 3.16742
76 2GMV UN8 3.16742
77 2GMV PEP 3.16742
78 2ZPA ADP 3.16742
79 1NHX FTB 3.16742
80 1NHX PEP 3.16742
81 5I0H ADP BEF 3.16742
82 3ZS9 ADP ALF 3.16742
83 2WOJ ADP ALF 3.16742
84 5NM7 GLY 3.16742
85 1AQU A3P 3.16742
86 5H4S RAM 3.16742
87 3QVV 3QV 3.16742
88 3QVV A3P 3.16742
89 1OJ4 ANP 3.16742
90 3MGB PAP 3.16742
91 4EUE NAI 3.16742
92 3SXN COA 3.16742
93 2OFW ADX 3.36538
94 3VMF GTP 3.61991
95 2VVG ADP 3.61991
96 2Q2Y ADP 3.61991
97 2Q2Y MKR 3.61991
98 3P4X ADP 3.61991
99 5LB3 ADP 3.61991
100 5AK0 8V1 3.61991
101 6B8B ADP 3.61991
102 5N69 ADP 3.61991
103 3FKQ ATP 3.61991
104 1SVM ATP 3.61991
105 4BFW ZVW 3.61991
106 1DAK ADP 3.61991
107 1DAK DPU 3.61991
108 5Y6N ADP 3.61991
109 1W5T ADP 3.61991
110 3QF7 ANP 3.61991
111 1W5T ANP 3.61991
112 3WDM ADN 3.61991
113 6H5E ANP 3.61991
114 1JJV ATP 3.8835
115 2PEZ DAT 3.91061
116 2PEZ GGZ 3.91061
117 2QG6 NMN 4.0201
118 5H67 ATP 4.0201
119 2RCN GDP 4.0724
120 4LYA ATP 4.0724
121 1QF5 GDP 4.0724
122 1QF5 RPL 4.0724
123 4TL6 ANP 4.0724
124 3EWA ANP 4.0724
125 1FP6 ADP 4.0724
126 1V8K ANP 4.0724
127 1JI0 ATP 4.0724
128 5G41 AP5 4.0724
129 4YJ1 ADP 4.0724
130 1XP8 AGS 4.0724
131 4GBM A3P 4.0724
132 1KK8 BEF ADP 4.0724
133 4LJ9 ACP 4.0724
134 2FAH GDP 4.0724
135 3BER AMP 4.0724
136 4ITM ATP 4.0724
137 5LLB 6YZ 4.0724
138 2JJK R15 4.0724
139 4JZ8 CIT 4.0724
140 3KC1 2T6 4.0724
141 3VPC ADP 4.0724
142 1PK8 ATP 4.0724
143 1Z83 AP5 4.08163
144 1ZIN AP5 4.14747
145 4MKF AP5 4.14747
146 1XX6 ADP 4.18848
147 4TMK T5A 4.22535
148 4QRH 0O2 4.28571
149 2F3R G5P 4.34783
150 1XEX ATP 4.3956
151 3KTA AP5 4.3956
152 1D2N ANP 4.41176
153 1B7T ADP 4.48718
154 3B5J 12D 4.52489
155 1G3Q ADP 4.52489
156 1E2K TMC 4.52489
157 4ZKD GDP 4.52489
158 5ZXD ATP 4.52489
159 1LVK MNT BEF 4.52489
160 3KJI ADP 4.52489
161 3EZ2 ADP 4.52489
162 5M7P ADP 4.52489
163 3ZFD ANP 4.52489
164 4OHY ANP 4.52489
165 1NJF ADP 4.52489
166 4FCW ADP 4.52489
167 1NJF AGS 4.52489
168 5BYK OAQ 4.52489
169 5BYK A3P 4.52489
170 4A4Z ANP 4.52489
171 1L2T ATP 4.52489
172 5BRT CH9 4.52489
173 5ZYN FAD 4.52489
174 5WQP NCA 4.52489
175 1S3G AP5 4.60829
176 4X8O AP5 4.6729
177 3UYW TAU 4.6729
178 4CVN ADP 4.71204
179 3R96 AMP 4.78723
180 3R96 ACO 4.78723
181 2VBQ BSJ 4.84848
182 2IL4 COA 4.85437
183 4WOP CTP 4.88889
184 2CDN ADP 4.97512
185 2AWN ADP 4.97738
186 5L3W GDP 4.97738
187 3A4M ADP 4.97738
188 5FHD ADP ALF 4.97738
189 2OZE AGS 4.97738
190 4IHQ ADP 4.97738
191 1G6H ADP 4.97738
192 4HSE ADP 4.97738
193 1G41 ADP 4.97738
194 5G3Y ADP 4.97738
195 3NHB ADP 4.97738
196 2XAU ADP 4.97738
197 3FVQ ATP 4.97738
198 1OFH ADP 4.97738
199 5XDR ADP 4.97738
200 1IHU AF3 4.97738
201 5FTB ANP 4.97738
202 1IHU ADP 4.97738
203 1NST A3P 4.97738
204 2J5V PCA 4.97738
205 2ZW5 COA 4.97738
206 5E5U MLI 5.02513
207 4XTR ADP 5.06912
208 4XTR ATP 5.06912
209 4XVU ATP 5.06912
210 4MKG AP5 5.06912
211 1KO8 6PG 5.14286
212 2ZTS ADP 5.17928
213 5BQ5 ADP BEF 5.29101
214 1BO4 COA 5.35714
215 3LRE ADP 5.42986
216 4P4T GDP 5.42986
217 4RZ3 ADP 5.42986
218 4IEE AGS 5.42986
219 1FNN ADP 5.42986
220 2A2C ADP 5.42986
221 2A2C NG1 5.42986
222 1OYY AGS 5.42986
223 5GVR LMR 5.42986
224 2QQ0 THM 5.43478
225 2QQ0 ANP 5.43478
226 2QQ0 ADP 5.43478
227 2QQ0 TMP 5.43478
228 2W58 ADP 5.44554
229 1VHT BA3 5.50459
230 5ZB0 TYD 5.55556
231 5ZB0 ADP 5.55556
232 4R2I ANP 5.71429
233 3COB ADP 5.88235
234 3H4S ADP 5.88235
235 2PZE ATP 5.88235
236 3E70 GDP 5.88235
237 1F9V ADP 5.88235
238 3T34 GDP 5.88235
239 2NCD ADP 5.88235
240 4FRZ ADP 5.88235
241 5EXT ADP 5.88235
242 4H1V GNP 5.88235
243 1RRC ADP 5.88235
244 2DPY ADP 5.88235
245 5X40 ACP 5.88235
246 5VHC BEF ADP 5.88235
247 4WZ6 ATP 5.88235
248 4IDN GNP 5.88235
249 3QXC ATP 5.88235
250 3B7G ANP 5.88235
251 2CHG ANP 5.88235
252 2D7D ADP 5.88235
253 3Q9L ATP 5.88235
254 2JK0 ASP 5.88235
255 3QKT ANP 5.88235
256 1Y63 ADP 5.97826
257 1QF9 C5P 6.18557
258 1QF9 ADP 6.18557
259 1QF9 ALF 6.18557
260 1KK1 GNP 6.33484
261 4U00 ADP 6.33484
262 5U32 GDP 6.33484
263 2XTZ GSP 6.33484
264 4PX9 ADP 6.33484
265 1P9B GDP 6.33484
266 2CBZ ATP 6.33484
267 2BEK ATP 6.33484
268 5IRR GSP 6.33484
269 5IFS ADP 6.33484
270 1R0X ATP 6.33484
271 1OE0 TTP 6.33484
272 1IN4 ADP 6.33484
273 2I4I AMP 6.33484
274 3RLF ANP 6.33484
275 5MEX SZZ 6.33484
276 5MEX PAP 6.33484
277 4CZG ADP 6.33484
278 4CZG QH3 6.33484
279 1UKZ ADP 6.40394
280 1GXU 2HP 6.59341
281 1YRB GDP 6.78733
282 3WY9 GDP 6.78733
283 3WYA GDP 6.78733
284 3CNL GNP 6.78733
285 5L3V GDP 6.78733
286 2ZFI ADP 6.78733
287 3DC4 ADP 6.78733
288 5LTJ ADP 6.78733
289 4JLV ADP 6.78733
290 1OS1 PYR 6.78733
291 1OS1 ATP 6.78733
292 1CR1 TTP 6.78733
293 4GOX A3P 6.78733
294 2CE7 ADP 6.78733
295 1XKV ATP 6.78733
296 5L3S GNP 6.78733
297 5Z69 AGS 6.78733
298 5LTJ BEF 6.78733
299 5MZN ADP 6.78733
300 5VGR GDP 6.78733
301 1T3D CYS 6.78733
302 4AVB ACO 6.78733
303 2R75 01G 6.78733
304 5MVR ADP 6.79012
305 3W5J GDP 6.86275
306 4TTQ ATP 6.97674
307 2FH5 GTP 7.00935
308 4UXH T5A 7.06522
309 1ZUI SKM 7.14286
310 1Y3A GDP 7.23982
311 1BH2 GSP 7.23982
312 2OM2 GDP 7.23982
313 4KVA GTP 7.23982
314 5WC2 ADP 7.23982
315 2GKS ADP 7.23982
316 2ODE ALF GDP 7.23982
317 6FAA ADP 7.23982
318 1W0J ADP 7.23982
319 2PL3 ADP 7.23982
320 1SVK ALF GDP 7.23982
321 3TBK ANP 7.23982
322 2FSH ANP 7.23982
323 2B8T THM 7.23982
324 1W0J ADP BEF 7.23982
325 3V2U ATP 7.23982
326 1VKJ A3P 7.23982
327 3H86 AP5 7.29167
328 4HUT ATP 7.32984
329 4BQS K2Q 7.38636
330 4BQS ADP 7.38636
331 1RM6 PCD 7.45342
332 3CX8 GSP 7.69231
333 3AB3 GDP 7.69231
334 2OG2 MLI 7.69231
335 5IRN ADP 7.69231
336 3B9Q MLI 7.69231
337 4Q1A 2XZ 7.69231
338 4Q1A UDP 7.69231
339 1ZCB GDP 7.69231
340 2QZ4 ADP 7.69231
341 2BIF SIN 7.69231
342 2BIF ANP 7.69231
343 5L3R GCP 7.69231
344 6C90 ADP 7.69231
345 2ZE7 AMP 7.69231
346 2ZE7 DST 7.69231
347 1Q20 A3P 7.69231
348 1Q20 PLO 7.69231
349 5AHO TLA 7.69231
350 5KUT GDP 7.93651
351 3UIE ANP 8
352 6AU6 GDP 8.1448
353 5BN3 ADP 8.1448
354 1F5N GNP 8.1448
355 1XMV ADP 8.1448
356 4PJ3 ANP 8.1448
357 4ZDJ UTP 8.1448
358 1K6M AGS 8.1448
359 4YMU ATP 8.18182
360 1NRJ GTP 8.25688
361 1NN5 2DT 8.37209
362 1NN5 ANP 8.37209
363 1G7C 5GP 8.51064
364 1PUJ GNP 8.59729
365 3FWY ADP 8.59729
366 4QOS ADP 8.59729
367 5UIV ADP 8.59729
368 5C9P FUC 8.59729
369 3PQC GDP 8.71795
370 4QM7 GTP 8.77193
371 2JAQ DCP 8.78049
372 3FB4 AP5 8.7963
373 2WJH GDP 9.03614
374 2WJH FLC 9.03614
375 4NON GDP 9.04977
376 1YTM ATP 9.04977
377 1U0J ADP 9.04977
378 6B4K ANP 9.04977
379 3FXU TSU 9.04977
380 4DDY DN6 9.04977
381 2QN6 GDP 9.50226
382 4LPS GDP 9.50226
383 4RD0 GDP 9.50226
384 1B0U ATP 9.50226
385 2WHX ADP 9.50226
386 6CS8 F9Y 9.50226
387 1ION ADP 9.50226
388 1TKB N1T 9.50226
389 4I6G FAD 9.50226
390 2YOH WMJ 9.52381
391 4HI0 GDP 9.54774
392 5H7J GCP 9.95475
393 5TSH ADP 9.95475
394 5TSH ANP 9.95475
395 2JLR ANP 9.95475
396 1Z6T ADP 9.95475
397 5KSP GDP 10
398 2WJG GDP 10.1064
399 3U6B GDP 10.4072
400 4P3Y GDP 10.4072
401 2HCJ GDP 10.4072
402 1D8T GDP 10.4072
403 5JBQ GDP 10.4072
404 4G5G GDP 10.4072
405 3U6K GDP 10.4072
406 2BVN GNP 10.4072
407 4PC3 GDP 10.4072
408 3FYH ADP 10.4072
409 2IS6 ADP 10.4072
410 4XGU ADP 10.4072
411 4ZY1 4U5 10.4072
412 5H68 AGS 10.8597
413 1FQJ GDP 10.8844
414 1LVG ADP 11.1111
415 3ZIA ATP 11.1111
416 3ZIA ADP 11.1111
417 6CRK GDP 11.3122
418 5KDO GDP 11.3122
419 1X6V ADP 11.3122
420 1UJ2 ADP 11.3122
421 1UJ2 C5P 11.3122
422 1AKY AP5 11.3636
423 1M7G AV2 11.3744
424 1M7G ADX 11.3744
425 1M7G ADP 11.3744
426 2ZFZ ARG 11.3924
427 2RGX AP5 11.6505
428 5GOE GDP 11.7647
429 2XT3 ADP 11.7647
430 3DEF GDP 11.7647
431 1SQ5 ADP 11.7647
432 2Z5F A3P 11.7647
433 3TMK T5A 12.037
434 5CK5 GDP 12.2172
435 1RJ9 GCP 12.2172
436 4WZA ADP 12.2172
437 2IYL GDP 12.2172
438 4WZA ACP 12.2172
439 1OXV ANP 12.2172
440 4NE2 ADP 12.2172
441 4NE2 SH2 12.2172
442 1H65 GDP 12.2172
443 1NY5 ADP 12.2172
444 3IO3 ADP 12.2172
445 5HCN GCP 12.6697
446 1G7S GDP 12.6697
447 1DAR GDP 12.6697
448 4TMZ GSP 12.6697
449 4NCN GTP 12.6697
450 1T5C ADP 12.6697
451 5FG3 GDP 13.1222
452 2O0J ADP 13.1222
453 1F2U ATP 13.4228
454 1TQ4 GDP 13.5747
455 2H7C COA 13.5747
456 4E03 ADP 13.5922
457 4B47 GDP 14.0271
458 1JJ7 ADP 14.0271
459 5K04 COA 14.0271
460 2O66 FLC 14.0741
461 5M04 GDP 14.4796
462 4D81 ADP 14.9321
463 4YSX FAD 15.4255
464 4YDS ATP 16.2896
465 5J1S ATP 17.0732
466 1IWE IMP 17.1946
467 1WDT GTP 17.1946
468 4OI4 ATP 17.3913
469 4R98 GNH 18.0812
470 3IIJ ADP 18.3333
471 4ZG4 VO4 ADP 18.552
472 5HR5 ADP 19.0045
473 1W7J ADP BEF 19.457
474 2X77 GDP 19.5767
475 1CS4 GSP 20.7547
476 4M9Q GNP 20.8145
477 3DOE GTP 20.8333
478 2KIN ADP 21
479 1UPT GTP 21.0526
480 3AQ4 GDP 21.1957
481 1D2E GDP 21.267
482 1KSH GDP 21.5054
483 1F6B GDP 21.7172
484 1MKY GDP 21.7195
485 1MR3 G3D 22.0994
486 1HTW ADP 22.1519
487 1O3Y GTP 22.2892
488 1J2J GTP 22.2892
489 2J59 GTP 22.2892
490 4YLG GDP 22.5434
491 5W76 GDP 22.6244
492 2WIC GNP 23.0769
493 4KAX GTP 23.0769
494 1RE0 GDP 23.1707
495 1S9D GDP 23.1707
496 2A5F GTP 23.4286
497 3PCR GTP 24.0741
498 4DCT GDP 24.4344
499 3N5C GDP 24.6914
500 2W83 GTP 24.8485
501 1M2O GNP 25.2632
502 3A1S GDP 25.7919
503 2V7Q ATP 28
504 2CK3 ANP 28
505 2V7Q ADP 28
506 2CK3 ADP 28
507 4ZI2 GNP 28.4211
508 2WKQ GTP 28.5068
509 4GOJ GNP 28.5714
510 2QTV GNP 28.7425
511 1FZQ GDP 29.2818
512 1YZG GDP 29.6089
513 2J0V GDP 29.717
514 5JCP GDP ALF 29.8643
515 1ZJ6 G3D 30.4813
516 3T12 GDP ALF 30.8081
517 3T1O GDP 30.8081
518 4BAS GNP 31.6583
519 1GWN GTP 31.7073
520 3T5G GDP 32.0442
521 1RYH GNP 32.5123
522 6BSX GDP 32.5843
523 6BSX E7S 32.5843
524 1DS6 GDP 33.3333
525 1E96 GTP 33.3333
526 4V0K GDP 33.7278
527 1I4D GDP 33.8542
528 2W2X GSP 34.0541
529 5DI3 GNP 34.0541
530 2GCO GNP 34.3284
531 2GCN GDP 34.3284
532 4D0N GDP 35.1351
533 6BC0 GSP 35.1351
534 6BCB GSP 35.1351
535 6BCA GSP 35.1351
536 1M7B GTP 35.3261
537 4ITR GDP 35.6021
538 3LXR GDP 35.6757
539 5HPY GDP 35.6757
540 2WMO GTP 35.7895
541 1G4U GDP 35.8696
542 4XOI GTP 36.1111
543 2FJU GSP 36.5169
544 4XSH GSP 36.8715
545 4YC7 GNP 37.0166
546 1MH1 GNP 37.0968
547 4DID GDP 37.8238
548 1HE1 GDP 38.0682
549 1HE1 AF3 38.0682
550 5YT0 GDP 38.0952
551 3SBD GNP 38.5027
552 1R4A GNP 38.7879
553 5EE5 GTP 39.1813
554 1ZD9 GDP 39.3617
555 4DKX GDP 41.6667
556 2BCG GDP 42.233
557 5OCG GNP 42.328
558 2ZEJ GDP 42.3913
559 1OIX GDP 42.4084
560 4U5X GNP 42.6966
561 2F9L GDP 42.7136
562 1OIV GDP 42.9319
563 3CPJ GDP 42.9864
564 5UQW GDP 43.3862
565 2CJW GDP 43.75
566 5TB5 GDP 43.7838
567 5TAR GDP 43.7838
568 2A9K GDP 44.9198
569 3Q85 GNP 45.5621
570 5JCZ GDP 45.8101
571 5UPK GNP 45.9459
572 1Z06 GNP 46.0317
573 3BC1 GNP 46.1538
574 2EW1 GNP 46.2687
575 1VG0 GDP 46.3768
576 1VG8 GNP 46.3768
577 3Q72 GNP 46.988
578 3RWO GDP 47.027
579 1YZN GNP 47.027
580 2A5J GDP 47.1204
581 4K81 GTP 47.3684
582 2C5L GTP 47.3988
583 4C4P GNP 47.3988
584 1ZC3 GNP 47.4286
585 4LX0 BEF GDP 47.4576
586 5LEF GTP 47.644
587 5SZH GNP 47.7833
588 5O2T GSP 47.929
589 1UAD GNP 48
590 1CLU DBG 48.7952
591 2UZI GTP 48.7952
592 5E95 GDP 48.8095
593 1G16 GDP 48.8235
594 2HT6 GDP 48.8506
595 1X1R GDP 48.8764
596 3TKL GTP 48.9796
597 5OEC GDP 49.1803
598 3KUD GDP 49.3976
599 1U8Z GDP 49.4048
600 1Z0J GTP 49.4118
601 5O74 GDP 49.4444
602 1KY3 GDP 49.4506
603 1YVD GNP 49.7041
604 5WDR GNP 49.7076
605 3DDC GNP 50
Pocket No.: 2; Query (leader) PDB : 3GJ0; Ligand: GDP; Similar sites found with APoc: 16
This union binding pocket(no: 2) in the query (biounit: 3gj0.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 4JLS 3ZE None
2 4WEI GLC GAL None
3 1I0B PEL 1.35747
4 5YF1 8V0 2.26244
5 5YF1 SFG 2.26244
6 1NV8 MEQ 2.71493
7 1NV8 SAM 2.71493
8 2F5X ASP 2.88462
9 1OBV FMN 3.5503
10 5X62 SAH 3.61991
11 2BO4 FLC 3.61991
12 1V25 ANP 3.61991
13 1Q19 SSC 5.88235
14 1FQJ ALF 10.8844
15 2VOH CIT 11.465
16 2R4V GSH 23.5294
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