-->
Receptor
PDB id Resolution Class Description Source Keywords
3GD8 1.8 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 AND ITS MECHAN CONDUCTANCE HOMO SAPIENS BRAIN EDEMAAQUAPORIN PROTON EXCLUSION STRUCTURAL GENOMICSPROTEIN STRUCTURE INITIATIVE CENTER FOR STRUCTURES OF MEMBPROTEINS CSMP GLYCOPROTEIN MEMBRANE PHOSPHOPROTEIN TRANSMEMBRANE TRANSPORT MEMBRANE PROTEIN
Ref.: CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 A AND MECHANISM OF CONDUCTANCE. PROC.NATL.ACAD.SCI.USA V. 106 7437 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BOG A:473;
Valid;
none;
submit data
292.369 C14 H28 O6 CCCCC...
GOL A:1;
A:2;
A:3;
A:4;
A:6;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3GD8 1.8 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 AND ITS MECHAN CONDUCTANCE HOMO SAPIENS BRAIN EDEMAAQUAPORIN PROTON EXCLUSION STRUCTURAL GENOMICSPROTEIN STRUCTURE INITIATIVE CENTER FOR STRUCTURES OF MEMBPROTEINS CSMP GLYCOPROTEIN MEMBRANE PHOSPHOPROTEIN TRANSMEMBRANE TRANSPORT MEMBRANE PROTEIN
Ref.: CRYSTAL STRUCTURE OF HUMAN AQUAPORIN 4 AT 1.8 A AND MECHANISM OF CONDUCTANCE. PROC.NATL.ACAD.SCI.USA V. 106 7437 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3GD8 - GOL C3 H8 O3 C(C(CO)O)O
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3GD8 - GOL C3 H8 O3 C(C(CO)O)O
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3GD8 - GOL C3 H8 O3 C(C(CO)O)O
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BOG; Similar ligands found: 82
No: Ligand ECFP6 Tc MDL keys Tc
1 HSJ 1 1
2 BOG 1 1
3 BNG 1 1
4 KGM 0.976744 1
5 B7G 0.976744 1
6 BHG 0.909091 0.975
7 GLC HEX 0.909091 0.975
8 JZR 0.909091 0.975
9 AFO 0.886364 0.904762
10 DEG 0.76087 0.9
11 LMU 0.719298 0.952381
12 UMQ 0.719298 0.952381
13 DMU 0.719298 0.952381
14 LMT 0.719298 0.952381
15 XNS 0.637931 0.904762
16 DR4 0.637931 0.904762
17 FK9 0.607143 0.904762
18 GLA GAL GLC NBU 0.548387 0.880952
19 BHE 0.545455 0.930233
20 BGB 0.542857 0.930233
21 EBQ 0.537037 0.829268
22 BGL 0.526316 1
23 EBG 0.509091 0.785714
24 6UZ 0.507463 0.795455
25 OPM MAN MAN 0.507246 0.928571
26 4YA 0.492537 0.930233
27 FUC BHG 0.492537 0.930233
28 BHG FUC 0.492537 0.930233
29 AOG FUC 0.485714 0.769231
30 FEE 0.480519 0.754717
31 GLA GAL BGC 5VQ 0.47619 0.833333
32 GM3 0.473684 0.769231
33 MA4 0.465753 0.833333
34 F61 0.461538 0.754717
35 AGH 0.461538 0.754717
36 0SH 0.461538 0.754717
37 PBS 0.461538 0.754717
38 DA8 0.458333 0.930233
39 10M 0.457143 0.888889
40 RGG 0.454545 0.731707
41 CM5 0.452055 0.833333
42 SOG 0.45 0.883721
43 MAN MMA 0.440678 0.744186
44 AMG 0.44 0.756098
45 GYP 0.44 0.756098
46 MBG 0.44 0.756098
47 MMA 0.44 0.756098
48 AIG FUC 0.43662 0.769231
49 MAL EDO 0.435484 0.744186
50 03F 0.433735 0.740741
51 HTG 0.433333 0.883721
52 AD7 0.432432 0.769231
53 BGA 0.428571 0.727273
54 GAL SPH NER 0.428571 0.754717
55 MLB 0.423729 0.738095
56 GAL GLC 0.423729 0.738095
57 MAN BMA 0.423729 0.738095
58 GLA BMA 0.423729 0.738095
59 GLA GLC 0.423729 0.738095
60 BMA GLA 0.423729 0.738095
61 MAN MAN 0.423729 0.738095
62 GLC GLC 0.423729 0.738095
63 BGC GLC 0.423729 0.738095
64 GLC BGC 0.423729 0.738095
65 LAK 0.423729 0.738095
66 GLA BGC 0.423729 0.738095
67 BGC GLA 0.423729 0.738095
68 GAL GAL 0.423729 0.738095
69 BMA MAN 0.423729 0.738095
70 1O2 0.421687 0.909091
71 MK0 0.421053 0.784314
72 TRE 0.42 0.738095
73 GLA EGA 0.419355 0.785714
74 DGD 0.416667 0.888889
75 3TF 0.416667 0.909091
76 JLS 0.413793 0.740741
77 DLG FUC 0.410959 0.930233
78 GLC GLC GLC GLC BGC 0.409836 0.738095
79 GLC GLC GLC 0.409836 0.738095
80 BMA MAN MAN 0.409836 0.738095
81 MAN MAN MAN 0.409836 0.738095
82 GLC GLC GLC GLC GLC BGC 0.409836 0.738095
Ligand no: 2; Ligand: GOL; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 GOL 1 1
2 SGM 0.538462 0.85
3 PGR 0.5 0.666667
4 MRY 0.5 0.863636
5 DTL 0.5 0.863636
6 PGO 0.5 0.666667
7 03W 0.461538 0.818182
8 SGL 0.4375 0.703704
9 RB0 0.4 0.863636
10 SOR 0.4 0.904762
11 MTL 0.4 0.904762
12 XYL 0.4 0.863636
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: 334
This union binding pocket(no: 1) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1GT4 UNA None
2 3A4T SFG None
3 5TUZ SAM None
4 5TUZ 7L6 None
5 5IOR FAD None
6 5IOR DUS None
7 5IOR RBF None
8 2Z6D FMN None
9 4N82 FMN None
10 3KV8 FAH None
11 4Z9D NAD None
12 3SAO DBH None
13 3BBH SFG None
14 4OAS 2SW None
15 5LXI GLU ASP GLU ASP PHE GLU ILE LEU SEP LEU None
16 1LO8 4CA 0.70922
17 1ED4 IPU 0.896861
18 2XVD AS6 0.896861
19 5ETR 5RW 1.24224
20 5ETR APC 1.24224
21 4MIB 28M 1.34529
22 3PP0 03Q 1.34529
23 5HCY 60D 1.34529
24 5EYG NAP 1.34529
25 2PL3 ADP 1.34529
26 4MZQ 1VU 1.38889
27 3BNK FMN 1.53061
28 3QLM PLM 1.6129
29 1LNM DTX 1.63043
30 6FA4 GNP 1.7341
31 4CQE CQE 1.79372
32 1VJY 460 1.79372
33 1VRP ADP 1.79372
34 2WKQ GTP 1.79372
35 3G5D 1N1 1.79372
36 2IV2 MGD 1.79372
37 1FS5 TLA 1.79372
38 3EM0 CHD 2.17391
39 1CXZ GSP 2.1978
40 2ART LPA AMP 2.24215
41 4O33 TZN 2.24215
42 4O33 3PG 2.24215
43 16PK BIS 2.24215
44 2GQT FAD 2.24215
45 6B3V ANP 2.24215
46 6B3V 7DQ 2.24215
47 2GQ2 NAP 2.24215
48 4X7G 3Y8 2.24215
49 5H5F SAM 2.24215
50 2O4C NAD 2.24215
51 4CR6 MAN 2.24215
52 4YBN FAD 2.24215
53 1J49 NAD 2.24215
54 4O9S 2RY 2.32558
55 1U9Q 186 2.32558
56 3KLJ FAD 2.33766
57 4G6I RS3 2.38095
58 2C94 TSF 2.5
59 3M6P BB2 2.59067
60 4UTG ANP 2.60116
61 1OIX GDP 2.6178
62 5ML3 DL3 2.68456
63 2XGT NSS 2.69058
64 1HXD BTN 2.69058
65 3VRY B43 2.69058
66 5KJK SAM 2.69058
67 5KJK 6T1 2.69058
68 5AOV NAP 2.69058
69 2TPI ILE VAL 2.69058
70 5JFL NAD 2.69058
71 1S1D GP2 2.69058
72 4IVG ANP 2.69058
73 1SDW IYT 2.69058
74 1PN0 IPH 2.69058
75 5VCV 1N1 2.69058
76 1Q19 SSC 2.69058
77 2BII MTV 2.69058
78 3HF3 FMN 2.69058
79 1PN0 FAD 2.69058
80 2BKX F6R 2.69058
81 3UEC ALA ARG TPO LYS 2.73973
82 6EXO C3E 2.7907
83 2YKL NLD 2.83019
84 1E96 GTP 3.125
85 3HY8 FMN 3.13901
86 3HY8 PLP 3.13901
87 5EW9 5VC 3.13901
88 1PHP ADP 3.13901
89 3CH6 311 3.13901
90 3CH6 NAP 3.13901
91 4L9I 8PR 3.13901
92 5AO7 AH0 NAG 3.13901
93 1I1E DM2 3.13901
94 3LXN MI1 3.13901
95 3QSB 743 3.13901
96 2XTZ GSP 3.13901
97 3P7N FMN 3.13901
98 3E1T FAD 3.13901
99 3KDU NKS 3.13901
100 3I3X U22 3.13901
101 3G5S FAD 3.13901
102 3KJD 78P 3.13901
103 1PQ7 ARG 3.13901
104 3T7V SAM 3.13901
105 5LMC FMN 3.13901
106 5AGR A52 3.13901
107 2JLD ALA GLY GLY ALA ALA ALA ALA ALA 3.13901
108 4PO2 ASN ARG LEU LEU LEU THR GLY 3.13901
109 3SBD GNP 3.20856
110 2DQA NAG NAG NAG 3.22581
111 1KMQ GNP 3.26087
112 1NXJ GLV 3.27869
113 4QVB F42 3.40136
114 3UIE ANP 3.5
115 4KCL H4B 3.58744
116 4KCL H44 3.58744
117 3JQ3 ADP 3.58744
118 2E5A LAQ 3.58744
119 4NTD FAD 3.58744
120 4BCM T7Z 3.58744
121 5YF9 NIO 3.58744
122 5W5R PYR 3.58744
123 4BCQ TJF 3.58744
124 1XF1 CIT 3.58744
125 1U6R ADP 3.58744
126 4CFU 2WC 3.58744
127 3D04 SAK 3.77358
128 2ED4 FAD 4.02685
129 4EMI NAD 4.03587
130 4EMI FAD 4.03587
131 5UPK GNP 4.03587
132 4YDD MD1 4.03587
133 4YDD MGD 4.03587
134 4KBF AMP 4.03587
135 5JIC ADP 4.03587
136 5JIC N7E 4.03587
137 4WOE ADP 4.03587
138 3ZZH ARG 4.03587
139 4GID 0GH 4.03587
140 3HCN CHD 4.03587
141 4ITH RCM 4.03587
142 5WS9 AMP 4.03587
143 3AB3 GDP 4.03587
144 2HSA FMN 4.03587
145 4UP3 NDP 4.03587
146 1XHC FAD 4.03587
147 6GFK SAH 4.03587
148 3PVW QRX 4.03587
149 4CS4 ANP 4.03587
150 4CS4 AXZ 4.03587
151 1ZEM NAD 4.03587
152 4QLX KTC 4.10959
153 4QLX FMN 4.10959
154 1I0S FMN 4.14201
155 1I0S NAP 4.14201
156 5KVM THR TYR PHE ALA VAL LEU MET VAL SER 4.21053
157 4R38 RBF 4.28571
158 2ODE ALF GDP 4.4843
159 1E5D FMN 4.4843
160 1SVK ALF GDP 4.4843
161 1BH2 GSP 4.4843
162 4YZC STU 4.4843
163 1MOQ GLP 4.4843
164 2AMV BIN 4.4843
165 6A1G 9OL 4.4843
166 6FCX FAD 4.4843
167 3B6R ADP 4.4843
168 2GU8 796 4.4843
169 4HDO GNP 4.4843
170 3DKP ADP 4.4843
171 1Y3A GDP 4.4843
172 5F52 ASP 4.4843
173 5A89 FMN 4.48718
174 2D37 NAD 4.54545
175 2D37 FMN 4.54545
176 5HWV MBN 4.61538
177 1NF3 GNP 4.6875
178 1Z08 GNP 4.70588
179 1F9A ATP 4.7619
180 1MH1 GNP 4.83871
181 4IPH 1FJ 4.87805
182 3G08 FEE 4.93274
183 1X54 4AD 4.93274
184 2RGJ FAD 4.93274
185 4C5N ACP 4.93274
186 5N6N SUC 4.93274
187 5XDT MB3 4.93274
188 1DL5 SAH 4.93274
189 4RF7 ARG 4.93274
190 5XDT GDP 4.93274
191 3HXU A5A 4.93274
192 5TWJ SAM 4.93827
193 3PQC GDP 5.12821
194 5V7P SAH 5.20833
195 4BX7 B4F 5.26316
196 1H9G COA MYR 5.38117
197 2I4I AMP 5.38117
198 4QTB 38Z 5.38117
199 3BAZ NAP 5.38117
200 3JU6 ANP 5.38117
201 5WXU FLC 5.38117
202 4IJP 1EH 5.38117
203 5Y4R C2E 5.38117
204 3A7R LAQ 5.38117
205 2J83 BAT 5.38117
206 2YBQ SAH 5.38117
207 2QIA U20 5.38117
208 5O0B 9FE 5.55556
209 4YV5 SVR 5.7377
210 3EFS BTN 5.8296
211 4LOO SB4 5.8296
212 5JOG 6LT 5.8296
213 4WHZ 3NL 5.8296
214 3PE2 E1B 5.8296
215 4X3R 686 5.8296
216 6CC0 EWM 5.8296
217 4XTX 590 5.8296
218 6FHO FAD 5.8296
219 2C78 PUL 5.8296
220 5EOW FAD 5.8296
221 4CNE SAH 5.8296
222 4EI7 GDP 5.8296
223 1IBR GNP 5.8296
224 4BMO FMN 5.88235
225 3K87 FAD 5.94595
226 6APV 3L4 6.01852
227 3AB4 LYS 6.17978
228 4ZFL 4NK 6.27803
229 2GOU FMN 6.27803
230 3T4L ZEA 6.27803
231 3OV6 MK0 6.27803
232 5JCA FAD 6.27803
233 3Q3H UDP 6.27803
234 4PTZ FMN 6.28272
235 3CB0 FMN 6.35838
236 1N9L FMN 6.42202
237 2YAK OSV 6.72646
238 1BC5 ACE ASN TRP GLU THR PHE 6.72646
239 1LAF ARG 6.72646
240 2PX8 MGT 6.72646
241 1TAD GDP 6.72646
242 1TAD ALF 6.72646
243 1FQK ALF 6.72646
244 5Z21 NAI 6.72646
245 5O96 SAM 6.72646
246 1FQK GDP 6.72646
247 5UWP GNP 6.99301
248 5UWJ GNP 6.99301
249 5UWI GNP 6.99301
250 5DIF GNP 6.99301
251 5DI9 GNP 6.99301
252 5UWR GNP 6.99301
253 5UWU GNP 6.99301
254 5UWO GNP 6.99301
255 5UWQ GNP 6.99301
256 5UWT GNP 6.99301
257 5DHF GNP 6.99301
258 5UWH GNP 6.99301
259 5UWS GNP 6.99301
260 4HAT GNP 7.14286
261 5H2U 1N1 7.17489
262 5G48 1FL 7.17489
263 3RFV NAI 7.17489
264 3RFV 15L 7.17489
265 3BC1 GNP 7.17949
266 1WLJ U5P 7.40741
267 1GZ4 ATP 7.62332
268 4PSW COA 7.89474
269 1Q2C COA 8.02469
270 1CS4 GSP 8.07175
271 1IH7 GMP 8.07175
272 4RD0 GDP 8.07175
273 4ZOH FAD 8.07175
274 1WK9 TSB 8.21918
275 3ZOD FMN 8.37696
276 3ZOD HQE 8.37696
277 3DLG GWE 8.52018
278 2P4Y C03 8.52018
279 3FUR Z12 8.52018
280 3Q9O NAD 8.52018
281 3H0L ADP 8.52018
282 2V57 PRL 8.52018
283 2Q3O FMN 8.52018
284 2AG4 LP3 8.53659
285 2AG4 OLA 8.53659
286 5D48 L96 8.55263
287 3KRU FMN 8.96861
288 1M15 ARG 8.96861
289 1M15 ADP 8.96861
290 3REU ATP 8.96861
291 3NRZ FAD 8.96861
292 4BG4 ADP 9.41704
293 2HBL AMP 9.86547
294 2DBZ NAP 9.86547
295 1ZCH FMN 9.86547
296 4C3Y ANB 9.86547
297 5UIU 8CG 9.86547
298 1USF NAP 10.1124
299 1USF FMN 10.1124
300 1Q3A NGH 10.303
301 4TWP AXI 10.3139
302 3E7W AMP 10.3139
303 4XJ2 FMN 10.6383
304 4P5Z Q7M 10.7623
305 2WJG GDP 11.1702
306 4MVK ACE VAL PHE PHE ALA GLU ASP NH2 11.1702
307 3EB9 FLC 11.2108
308 2OHH FMN 11.2108
309 4M52 FAD 11.6592
310 3MVH WFE 12.1076
311 1FFU FAD 12.2699
312 2P8O BVA 12.3711
313 5CAE SIN 12.5561
314 5CAE COA 12.5561
315 4B0T ADP 12.5561
316 3ZLB ANP 13.0045
317 4NOS ITU 13.4529
318 4F07 FAD 13.6842
319 5O2T GSP 14.3498
320 1N62 FAD 14.4578
321 1M7B GTP 14.6739
322 5Z84 TGL 15.2174
323 5ECP ATP 15.2466
324 5ECP MET 15.2466
325 5ECP JAA 15.2466
326 5CIC 51R 16.1435
327 4KBA 1QM 16.5919
328 5W4W 9WG 16.5919
329 2ORO 228 17.9372
330 5WXH ALA ARG THR M3L GLN THR ALA 19.0476
331 4ONA UW1 20.1794
332 1FQJ ALF 21.4286
333 1FQJ GDP 21.4286
334 5UWW GNP 28.5714
Pocket No.: 2; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: 24
This union binding pocket(no: 5) in the query (biounit: 3gd8.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
1 2ZFZ ARG None
2 4B7P 9UN 1.34529
3 2DM6 NAP 1.79372
4 1J78 OLA 1.79372
5 4K49 HFQ 2.20588
6 4DDY DN6 2.24215
7 2OG2 MLI 2.69058
8 1M7G ADX 2.8436
9 1M7G ADP 2.8436
10 5XH2 NPO 3.13901
11 1C7O PPG 3.13901
12 2Q6B HR2 4.03587
13 3LOO B4P 4.03587
14 1V6A TRE 4.03587
15 1V8B NAD 4.4843
16 4M4K GDU 4.93274
17 4M4K XYP XYP 4.93274
18 2GAG FAD 5.2381
19 2J5V PCA 5.38117
20 1GXU 2HP 5.49451
21 6C0B MLI 6.27803
22 4GO7 THR 6.72646
23 4GAH 0ET 7.6555
24 1NBU PH2 8.40336
Pocket No.: 6; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3gd8.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3gd8.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3gd8.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 3GD8; Ligand: BOG; Similar sites found with APoc: 1
This union binding pocket(no: 9) in the query (biounit: 3gd8.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
1 4DDY DN6 2.24215
Pocket No.: 10; Query (leader) PDB : 3GD8; Ligand: BOG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 3gd8.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 3GD8; Ligand: BOG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 3gd8.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 3GD8; Ligand: BOG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 3gd8.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 13; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: 351
This union binding pocket(no: 13) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3GDH SAH None
2 5JPH COA None
3 2VBQ BSJ None
4 4B5P ACO None
5 3ZJ0 ACO None
6 2WCU FUC None
7 3IE3 GSH None
8 3IE3 N11 None
9 3VC1 SAH 0.896861
10 3VC1 GST 0.896861
11 1T8U UAP SGN IDS SGN 0.896861
12 1T8U A3P 0.896861
13 1N2X SAM 1.34529
14 1ODJ GMP 1.34529
15 1O5O U5P 1.35747
16 4POO SAM 1.5
17 6H3O FAD 1.79372
18 4C2X NHW 1.79372
19 2YPI PGA 1.79372
20 1G55 SAH 1.79372
21 5GSN FAD 1.79372
22 1GUA GNP 1.79641
23 1QSM ACO 1.97368
24 1L3I SAH 2.08333
25 1IIM TTP 2.24215
26 1BOB ACO 2.24215
27 2WPX ACO 2.24215
28 1BXG NAD 2.24215
29 2YB9 HA0 2.24215
30 2WTX UDP 2.24215
31 2WTX VDO 2.24215
32 1LLU NAD 2.24215
33 1BW9 PPY 2.24215
34 4GBM A3P 2.24215
35 1OJ4 ANP 2.24215
36 3PT9 SAH 2.24215
37 1U2Z SAH 2.24215
38 2WW4 ADP 2.24215
39 5OC1 FAD 2.24215
40 1C1X NAD 2.24215
41 2WPW ACO 2.24215
42 4MOP 2H5 2.24215
43 1I1N SAH 2.24215
44 3X44 PUS 2.40964
45 1MJH ATP 2.46914
46 3P2H NOO 2.48756
47 2ZL4 ALA ALA ALA ALA 2.55102
48 1L1Q 9DA 2.68817
49 5AE2 FYC 2.69058
50 5AE2 FAD 2.69058
51 1KPG SAH 2.69058
52 1SQA UI1 2.69058
53 1GJC 130 2.69058
54 1XCL SAH 2.69058
55 3NEM AMO 2.69058
56 2NPX FAD 2.69058
57 2OEM 1AE 2.69058
58 4IQY AR6 2.69058
59 2QE0 NAP 2.69058
60 2YNE YNE 2.69058
61 2YNE NHW 2.69058
62 3A06 NDP 2.69058
63 5HSA FAS 2.69058
64 2YNC YNC 2.69058
65 5C5H 4YB 2.69058
66 3A06 FOM 2.69058
67 2B8W ALF 5GP 2.69058
68 1WUU ANP 2.69058
69 3G1Z AMP 2.69058
70 1OYY AGS 2.69058
71 2QCD U5P 2.69058
72 3CTY FAD 2.69058
73 4JYD SAH 2.69058
74 2PWY SAH 2.71318
75 2FLI DX5 2.72727
76 4R57 ACO 2.84091
77 5YGE ACO 2.87356
78 5YGE GLU 2.87356
79 5ZYN FAD 2.9724
80 5H86 BCO 2.97619
81 1P1C SAH 3.01508
82 2QG6 NMN 3.01508
83 1WG8 SAM 3.13901
84 3TO7 COA 3.13901
85 1Q0S SAH 3.13901
86 3MB5 SAM 3.13901
87 1UPF URF 3.13901
88 3NRR NAP 3.13901
89 3NRR D16 3.13901
90 6FDF SAH 3.13901
91 6D6Y SAH 3.13901
92 3EVF GTA 3.13901
93 5ULP KB1 3.13901
94 2VAP GDP 3.13901
95 3EVF SAH 3.13901
96 5WM2 AMP 3.13901
97 5WM2 SAL 3.13901
98 3ITJ FAD 3.13901
99 3OZ2 FAD 3.13901
100 5TP0 BRN 3.13901
101 1QF5 GDP 3.13901
102 1QF5 RPL 3.13901
103 4JEJ 1GP 3.13901
104 4XQC NAD 3.13901
105 1UWK NAD 3.13901
106 1UWK URO 3.13901
107 1ZPR UMP 3.13901
108 4KRI SAH 3.13901
109 4NSQ COA 3.15789
110 1KUV CA5 3.38164
111 1W5F G2P 3.39943
112 1CM0 COA 3.57143
113 5KF9 ACO 3.58744
114 9LDT NAD 3.58744
115 5KF9 NAG 3.58744
116 5KF9 COA 3.58744
117 9LDB NAD 3.58744
118 4JB1 FAD 3.58744
119 4JB1 NAP 3.58744
120 3S1S SAH 3.58744
121 2WSA 646 3.58744
122 2WSA MYA 3.58744
123 1V97 FAD 3.58744
124 1WVG APR 3.58744
125 2Y31 SMQ 3.58744
126 1PVN MZP 3.58744
127 3EVG SAH 3.58744
128 1X87 NAD 3.58744
129 1QPG MAP 3.58744
130 4R74 F6P 3.58744
131 6GKV SAH 3.58744
132 2NVK FAD 3.58744
133 5FVJ ACO 3.61446
134 2WPF FAD 3.63636
135 2WPF WPF 3.63636
136 5LS7 ACO 3.64964
137 1XTT U5P 3.7037
138 2CNT COA 3.75
139 1TIQ COA 3.88889
140 4H6U ACO 4
141 3D2M COA 4.03587
142 2DPM SAM 4.03587
143 5FJN BE2 4.03587
144 5FJN FAD 4.03587
145 5N2I NAP 4.03587
146 1PS9 FAD 4.03587
147 1D6S MET PLP 4.03587
148 1D6S PLP MET 4.03587
149 1EZ4 NAD 4.03587
150 6CEP OXM 4.03587
151 6CEP NAD 4.03587
152 2QV7 ADP 4.03587
153 3BXO SAM 4.03587
154 3NTA FAD 4.03587
155 1P4A PCP 4.03587
156 4UA3 COA 4.03587
157 1X7D NAD 4.03587
158 2JBH 5GP 4.03587
159 3TKY SAH 4.03587
160 3QJ4 FAD 4.03587
161 2Q4V ACO 4.11765
162 1BO4 COA 4.16667
163 3TMK T5A 4.16667
164 1CJW COT 4.21687
165 4OBW SAM 4.28016
166 2I4O ATP 4.4843
167 1HYH NAD 4.4843
168 3TKA SAM 4.4843
169 1B8U OAA 4.4843
170 1B8U NAD 4.4843
171 2RHO GSP 4.4843
172 2I0K FAD 4.4843
173 1JG3 ADN 4.4843
174 3VPH OXM 4.4843
175 3VPH NAD 4.4843
176 2CVQ NDP 4.4843
177 2H1H AFH 4.4843
178 1EP2 FMN 4.4843
179 1EP2 ORO 4.4843
180 5DM1 5D7 4.4843
181 4ZG4 VO4 ADP 4.4843
182 5WRI A3P 4.4843
183 5M45 AMP 4.4843
184 6GAR FAD 4.4843
185 5WRJ A3P 4.4843
186 3NTD FAD 4.4843
187 2XVF FAD 4.4843
188 4E5N NAD 4.4843
189 1V7C HEY 4.4843
190 3PC3 P1T 4.4843
191 4KVX ACO 4.48718
192 3GDN HBX 4.93274
193 1VCO GLN 4.93274
194 1SQF SAM 4.93274
195 5YS9 FAD 4.93274
196 4C5N PXL 4.93274
197 4WOP CTP 4.93274
198 1BXK NAD 4.93274
199 5XDT ZI7 4.93274
200 3F3E LEU 4.93274
201 5WP5 SAH 4.93274
202 2W9S NDP 4.96894
203 2ZPA ACO 5.38117
204 1P0H ACO 5.38117
205 1P0H COA 5.38117
206 2D1S SLU 5.38117
207 3OVR 5SP 5.38117
208 1I00 UMP 5.38117
209 3E9I XAH 5.38117
210 2Q8Z NUP 5.38117
211 3U40 ADN 5.38117
212 5MSO NAP 5.38117
213 4AF0 IMP 5.38117
214 4EIL NDP 5.38117
215 3ICR FAD 5.38117
216 2KCE D16 5.38117
217 3ZEI AWH 5.38117
218 1I00 D16 5.38117
219 2X7J TPP 5.38117
220 3H8V ATP 5.38117
221 3ICS FAD 5.38117
222 3WIS FMN 5.52764
223 2CUL FAD 5.60345
224 6G96 ACO 5.68182
225 2JEV NHQ 5.74713
226 1YKF NAP 5.8296
227 4GKV NAD 5.8296
228 2R75 01G 5.8296
229 3VC3 C6P 5.8296
230 2RGO FAD 5.8296
231 2RGH FAD 5.8296
232 3A5Z KAA 5.8296
233 1LDM NAD 5.8296
234 3A5Y KAA 5.8296
235 1UM0 FMN 5.8296
236 2B4D COA 5.84795
237 2B4B COA 5.84795
238 1GHE ACO 6.21469
239 1I9G SAM 6.27803
240 6BWL NAD 6.27803
241 2HJR APR 6.27803
242 4A22 TD4 6.27803
243 5Z20 NAI 6.27803
244 4R1S NAP 6.27803
245 4CRZ ACO 6.29371
246 4ZVV GN0 6.72646
247 4ZVV NAD 6.72646
248 2UUU FAD 6.72646
249 2UUU PL3 6.72646
250 2PX8 SAH 6.72646
251 2PHN GDP 6.72646
252 3AXK NDP 6.97674
253 5MDH NAD 7.17489
254 4MDH NAD 7.17489
255 5ERG SAM 7.17489
256 1WPY BTN 7.17489
257 4YRY FAD 7.17489
258 2DXU BT5 7.17489
259 2C6Q NDP 7.17489
260 12AS AMP 7.17489
261 1KEV NDP 7.17489
262 1MV8 NAD 7.17489
263 2C6Q IMP 7.17489
264 2PID YSA 7.17489
265 5NUF NAD 7.17489
266 1TU3 GNP 7.59494
267 2IHU TP9 7.62332
268 1UPA TPP 7.62332
269 1PIG AGL GLC HMC AGL GLC BGC 7.62332
270 3LZW NAP 7.62332
271 3LZW FAD 7.62332
272 2IHT TPP 7.62332
273 5GM1 SAH 7.62332
274 1NW4 IMH 7.62332
275 6HKE MLT 7.62332
276 1PUA COA 7.97546
277 1QSR ACO 8.02469
278 1Q2D COA 8.02469
279 1QSN COA 8.02469
280 4ZGS NAD 8.07175
281 4YSW FAD 8.07175
282 4YSW NAI 8.07175
283 2RAB NAD 8.07175
284 2RAB FAD 8.07175
285 5K0A FAD 8.07175
286 5TWB FAD 8.07175
287 5J60 FAD 8.07175
288 3F8K COA 8.125
289 6F5W KG1 8.52018
290 4Z0G 5GP 8.52018
291 2CN0 F25 8.52018
292 1T3Q FAD 8.92857
293 1KPH SAH 8.96861
294 1MDB AMP DBH 8.96861
295 5JJR SAH 8.96861
296 1FIQ FAD 8.96861
297 5G5G FAD 8.96861
298 5CUQ NSC 8.96861
299 3QVV A3P 8.96861
300 5FFF NAP 8.96861
301 5FFF 5XC 8.96861
302 1V0C KNC 9.40594
303 1V0C ACO 9.40594
304 1L1E SAH 9.41704
305 3O84 HTJ 9.41704
306 4GOX A3P 9.41704
307 2J3M ATP 9.41704
308 2Z6I FMN 9.41704
309 2J3M PRI 9.41704
310 2POC UD1 9.86547
311 4ZM4 PLP 9.86547
312 2A8X FAD 9.86547
313 4QYS PLR 10.3139
314 1I1D COA 10.559
315 1I1D 16G 10.559
316 2BNE U5P 10.7623
317 6A0S HSE 10.7623
318 6A0S NDP 10.7623
319 1OFD FMN 10.7623
320 2YVJ NAI 11.0092
321 1YGC 905 11.1111
322 1DQX BMP 11.2108
323 6FCH PRP 11.236
324 5KOK S9T 11.6592
325 5KOK R9T 11.6592
326 5KOK SAH 11.6592
327 4M52 M52 11.6592
328 3LKZ SFG 11.6592
329 3TW1 AHN 11.6592
330 2PI8 NAG NAG NAG NAG NAG NAG 11.6592
331 5HGZ ACO 11.6592
332 5VJN IR8 12.2995
333 5VJN ADE 12.2995
334 5L95 AMP 12.5
335 1MO9 FAD 12.5561
336 5NUE NAD 12.5561
337 1MO9 KPC 12.5561
338 5HH0 COA 13
339 2PHT MAN MAN MAN 14.2857
340 1ON3 MCA 14.3498
341 1QB7 ADE 15.2466
342 4WZA ADP 17.0404
343 4WZA ACP 17.0404
344 3W8X FAD 17.094
345 3W8X FTK 17.094
346 1ORR NAD 17.4888
347 1RIW OSC 18.0952
348 4B3J COA 20.1794
349 3WR7 COA 23.5294
350 5GK9 ACO 24
351 6CUZ FEV 25.5605
Pocket No.: 14; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 14) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 15; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 15) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 16; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 16) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 17; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: 89
This union binding pocket(no: 17) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1RL4 BRR None
2 4YEE 4CQ None
3 6BSX GDP 1.1236
4 6BSX E7S 1.1236
5 1TL2 NDG 1.34529
6 1CT9 GLN 1.79372
7 4Q4K FMN 1.79372
8 2X1L ADN 1.79372
9 5HV0 AKG 1.84332
10 3KIF GDL 1.88679
11 2CWH PYC 2.24215
12 2CWH NDP 2.24215
13 1NJJ ORX 2.24215
14 1FDJ 13P 2.24215
15 4X7Q 3YR 2.24215
16 5ZI2 ADP 2.24215
17 1ZH8 NAP 2.24215
18 4NAT ADP 2.5
19 4NAT 2W5 2.5
20 6EMU SAM 2.53807
21 4Q3R XA2 2.69058
22 4GYW UDP 2.69058
23 5BNW 12V 2.69058
24 4D79 ATP 2.69058
25 1TUF AZ1 2.69058
26 3T7S SAM 2.69058
27 1XKQ NDP 2.69058
28 3IU9 T07 3.13901
29 4IU0 ABH 3.13901
30 4AT0 FAD 3.13901
31 1H74 ILE 3.13901
32 5TZJ UD1 3.13901
33 1QM5 GLC GLC GLC PO4 SGC GLC 3.13901
34 3TTC ADP 3.13901
35 4YWV SSN 3.13901
36 5ZFJ 9BF 3.13901
37 4L1F COS 3.13901
38 2OOR NAD 3.58744
39 1F8G NAD 3.58744
40 1L7E NAI 3.58744
41 6ER9 NAP 3.58744
42 6ER9 FAD 3.58744
43 1NM5 NAD 3.58744
44 2BEK ATP 3.58744
45 2HK1 FUD 3.58744
46 5EPO NAP 3.58744
47 6C2Z P1T 3.58744
48 4ER2 IVA VAL VAL STA ALA STA 3.58744
49 1T5B FMN 3.9801
50 1SB8 NAD 4.03587
51 5MZY 8EZ 4.03587
52 2XYQ SAH 4.09836
53 3KIH GDL 4.12371
54 4DR9 BB2 4.16667
55 2EW5 Y12 4.41989
56 1FP6 ADP 4.4843
57 5NDF UDP 4.4843
58 5NDF LU2 4.4843
59 1SMR PIV HIS PRO PHE HIS LPL TYR TYR SER 4.4843
60 4I42 1HA 4.4843
61 3G6N MET ALA SER 4.71204
62 5NNA BZM 4.93274
63 4I4Z 2NE 4.93274
64 1TPY SAH 4.93274
65 3ZS9 ADP ALF 5.38117
66 1ZVW PRP 5.38117
67 6FP4 FAD 5.38117
68 4J56 FAD 5.38117
69 2VYN NAD 5.8296
70 4J5R A1R 6.16438
71 2E1T MLC 6.27803
72 3P3G 3P3 6.72646
73 3P3G UKW 6.72646
74 2GJN NIS 7.31707
75 4Z87 5GP 7.62332
76 2O3Z AI7 8.07175
77 1TH8 ADP 8.27586
78 2Z6J FMN 9.86547
79 5UY8 AMZ 9.86547
80 5UY8 8UM 9.86547
81 1JQI CAA 10.3139
82 3CEV ARG 11.2108
83 1O6B ADP 11.2426
84 5GVH FMN 12.1076
85 2IVF MGD 12.5561
86 3B99 U51 13.0045
87 3O61 GDD 14.6597
88 5X40 ACP 16.5919
89 1XG4 ICT 24.6637
Pocket No.: 18; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 19; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 19) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 20; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 20) in the query (biounit: 3gd8.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 21; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: 43
This union binding pocket(no: 21) in the query (biounit: 3gd8.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 2BL9 CP6 1.34529
2 2BL9 NDP 1.34529
3 4POW OP1 1.34529
4 2W14 WR2 1.48515
5 5H81 NAP 2.24215
6 3OIG NAD 2.69058
7 5E2N V14 3.58744
8 6EDV COA 3.60825
9 4NKT 2KH 4.4843
10 3HIY UTP 4.4843
11 5A89 ADP 4.48718
12 6F3N ADN 4.93274
13 6F3N NAD 4.93274
14 3OND NAD 4.93274
15 3OND ADN 4.93274
16 2ZJ1 NAD 4.93274
17 2ZJ1 ARJ 4.93274
18 5M67 ADE 4.93274
19 5M67 NAD 4.93274
20 5M67 3D1 4.93274
21 4KXL 6C6 5.26316
22 3NJ4 AFX 5.38117
23 3NJ4 NAD 5.38117
24 2B56 U5P 5.38117
25 2B56 UTP 5.38117
26 4ELG 52J 5.42169
27 4ELG 52I 5.42169
28 1ATL 0QI 5.44554
29 2ZW5 COA 5.8296
30 5I49 2KH 6.72646
31 5I7S NAD 6.72646
32 5I7S E9P 6.72646
33 4XZ3 COA 7.17489
34 4XYM COA 7.17489
35 2HJ4 PNZ 7.40741
36 1QG6 NAD 7.62332
37 1QG6 TCL 7.62332
38 5CG1 NAD BBN 7.62332
39 4Z87 GDP 7.62332
40 6CHP F0Y 8.07453
41 1T36 ADP 12.5561
42 1VM6 NAD 14.7982
43 5U1M ACE LEU TYR ALA SER SER ASN PRO ALA PTR 20.9524
Pocket No.: 22; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 22) in the query (biounit: 3gd8.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 23; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 23) in the query (biounit: 3gd8.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 24; Query (leader) PDB : 3GD8; Ligand: GOL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 24) in the query (biounit: 3gd8.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
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