Receptor
PDB id Resolution Class Description Source Keywords
3FC2 2.45 Å EC: 2.7.11.21 PLK1 IN COMPLEX WITH BI6727 HOMO SAPIENS PROTEIN KINASE ATP-BINDING CELL CYCLE CELL DIVISION KINAMITOSIS NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN SERINE/THREONINE-PROTEIN KINASE TRANSFERASE
Ref.: BI 6727, A POLO-LIKE KINASE INHIBITOR WITH IMPROVED PHARMACOKINETIC PROFILE AND BROAD ANTITUMOR ACTIVIT CLIN.CANCER RES. V. 15 3094 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:3;
A:7;
 Invalid;
Invalid;
 none;
none;
 submit data
59.044 C2 H3 O2 CC(=O...
EDO A:1;
A:2;
A:4;
A:6;
 Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
 submit data
62.068 C2 H6 O2 C(CO)...
GOL A:9;
 Invalid;
 none;
 submit data
92.094 C3 H8 O3 C(C(C...
IBI A:10;
 Valid;
 none;
 ic50 = 0.87 nM
618.813 C34 H50 N8 O3 CC[C@...
PEG A:5;
 Invalid;
 none;
 submit data
106.12 C4 H10 O3 C(COC...
ZN A:8;
 Part of Protein;
 none;
 submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3FC2 2.45 Å EC: 2.7.11.21 PLK1 IN COMPLEX WITH BI6727 HOMO SAPIENS PROTEIN KINASE ATP-BINDING CELL CYCLE CELL DIVISION KINAMITOSIS NUCLEOTIDE-BINDING NUCLEUS PHOSPHOPROTEIN SERINE/THREONINE-PROTEIN KINASE TRANSFERASE
Ref.: BI 6727, A POLO-LIKE KINASE INHIBITOR WITH IMPROVED PHARMACOKINETIC PROFILE AND BROAD ANTITUMOR ACTIVIT CLIN.CANCER RES. V. 15 3094 2009
Members (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2RKU ic50 = 8 nM R78 C28 H39 N7 O3 CC[C@@H]1C....
2 4J53 ic50 = 2 nM 1J4 C27 H34 F3 N7 O3 CN1CCC(CC1....
3 2YAC ic50 = 0.002 uM 937 C24 H27 F3 N8 O3 CN1CCN(CC1....
4 4J52 ic50 = 3 nM 1J3 C28 H37 F N8 O3 CN1CCN(CC1....
5 3FC2 ic50 = 0.87 nM IBI C34 H50 N8 O3 CC[C@@H]1C....
6 4A4L ic50 = 0.015 uM 939 C22 H24 F3 N7 O2 Cn1cc(cc1c....
7 2OU7 ic50 = 155 uM ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
8 3KB7 ic50 = 0.007 uM 071 C23 H28 N8 O2 Cn1c-2c(c(....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2RKU ic50 = 8 nM R78 C28 H39 N7 O3 CC[C@@H]1C....
2 4J53 ic50 = 2 nM 1J4 C27 H34 F3 N7 O3 CN1CCC(CC1....
3 2YAC ic50 = 0.002 uM 937 C24 H27 F3 N8 O3 CN1CCN(CC1....
4 4J52 ic50 = 3 nM 1J3 C28 H37 F N8 O3 CN1CCN(CC1....
5 3FC2 ic50 = 0.87 nM IBI C34 H50 N8 O3 CC[C@@H]1C....
6 4A4L ic50 = 0.015 uM 939 C22 H24 F3 N7 O2 Cn1cc(cc1c....
7 2OU7 ic50 = 155 uM ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
8 3KB7 ic50 = 0.007 uM 071 C23 H28 N8 O2 Cn1c-2c(c(....
9 3THB ic50 = 2 nM 3TA C23 H25 Cl N6 S Cc1c(cc(cn....
10 2OWB ic50 = 0.44 uM 626 C23 H24 N6 O2 S CN1CCN(CC1....
11 5TA6 ic50 = 1.5 nM 79D C30 H37 N9 O2 CC[C@@H]1c....
50% Homology Family (15)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4I5M ic50 = 0.0088 uM R78 C28 H39 N7 O3 CC[C@@H]1C....
2 4I6H ic50 = 0.005 uM 1C8 C20 H23 N7 O S CC[C@@H]1C....
3 4I5P ic50 = 0.377 uM 1D1 C18 H23 N5 O CC[C@@H]1C....
4 4I6B ic50 = 1.17 uM 11G C14 H20 N4 O CC[C@@H]1C....
5 2RKU ic50 = 8 nM R78 C28 H39 N7 O3 CC[C@@H]1C....
6 4J53 ic50 = 2 nM 1J4 C27 H34 F3 N7 O3 CN1CCC(CC1....
7 2YAC ic50 = 0.002 uM 937 C24 H27 F3 N8 O3 CN1CCN(CC1....
8 4J52 ic50 = 3 nM 1J3 C28 H37 F N8 O3 CN1CCN(CC1....
9 3FC2 ic50 = 0.87 nM IBI C34 H50 N8 O3 CC[C@@H]1C....
10 4A4L ic50 = 0.015 uM 939 C22 H24 F3 N7 O2 Cn1cc(cc1c....
11 2OU7 ic50 = 155 uM ANP C10 H17 N6 O12 P3 c1nc(c2c(n....
12 3KB7 ic50 = 0.007 uM 071 C23 H28 N8 O2 Cn1c-2c(c(....
13 3THB ic50 = 2 nM 3TA C23 H25 Cl N6 S Cc1c(cc(cn....
14 2OWB ic50 = 0.44 uM 626 C23 H24 N6 O2 S CN1CCN(CC1....
15 5TA6 ic50 = 1.5 nM 79D C30 H37 N9 O2 CC[C@@H]1c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: IBI; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 IBI 1 1
2 R78 0.566929 0.930556
3 F2S 0.457746 0.863014
4 FND 0.457746 0.863014
5 EX1 0.442857 0.849315
6 79D 0.412162 0.842105
7 4K4 0.408451 0.835616
8 F3J 0.401361 0.824324
Similar Ligands (3D)
Ligand no: 1; Ligand: IBI; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3FC2; Ligand: IBI; Similar sites found with APoc: 9
This union binding pocket(no: 1) in the query (biounit: 3fc2.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 2BPM 529 32.6861
2 5DBX ANP 34.7561
3 1O9U ADZ 35.5224
4 4BCM T7Z 36.1194
5 4CFU 2WC 36.1194
6 6LUB EUX 36.1775
7 4H3P ANP 41.4925
8 2VN9 GVD 43.5216
9 2A19 ANP 46.831
Pocket No.: 2; Query (leader) PDB : 3FC2; Ligand: IBI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3fc2.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback