Receptor
PDB id Resolution Class Description Source Keywords
3F7D 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE SF-1 LBD BOUND BY PHOSPHATIDYLCHOLINE MUS MUSCULUS NUCLEAR RECEPTOR COACTIVATOR PEPTIDE LIGAND PHOSPHOLIPIDPHOSPHATIDYLCHOLINE TRANSCRIPTIONAL REGULATION DNA-BINDINBINDING NUCLEUS RECEPTOR TRANSCRIPTION TRANSCRIPTION REZINC-FINGER ACTIVATOR RNA-BINDING
Ref.: STRUCTURE OF SF-1 BOUND BY DIFFERENT PHOSPHOLIPIDS: FOR REGULATORY LIGANDS. MOL.ENDOCRINOL. V. 23 25 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
P42 A:1;
Valid;
none;
submit data
766.124 C42 H88 N O8 P CCCCC...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4QJR 2.4 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF HUMAN NUCLEAR RECEPTOR SF-1 (NR5A1) BOU HORMONE PIP3 AT 2.4 A RESOLUTION HOMO SAPIENS NUCLEAR HORMONE RECEPTOR NR5A1 SF-1 LIGAND BINDINGNUCLEAR REGULATORY LIGANDS TRANSCRIPTION TRANSCRIPTION REGULATIONSTRUCTURAL GENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS PROTEIN STRUCTURE INITIATIVE PSI-BIOLOGY PARTNERSHIP FOR BIOLOGY PIP3 PIP2 NUCLEUS NUCLEAR PHOSPHATIDYLINOSITOL PHOSPHATES TRANSCRIPTION FACTOR-HORMONE COMPLEX STEMCELL
Ref.: THE SIGNALING PHOSPHOLIPID PIP3 CREATES A NEW INTER SURFACE ON THE NUCLEAR RECEPTOR SF-1. PROC.NATL.ACAD.SCI.USA V. 111 15054 2014
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 308 families.
1 4QJR Kd = 80 nM PIZ C41 H82 O22 P4 CCCCCCCCCC....
2 3F7D - P42 C42 H88 N O8 P CCCCCCCCCC....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 266 families.
1 5UNJ Kd = 0.24 uM RJW C28 H34 O CCCCCCC1=C....
2 4QJR Kd = 80 nM PIZ C41 H82 O22 P4 CCCCCCCCCC....
3 3F7D - P42 C42 H88 N O8 P CCCCCCCCCC....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 220 families.
1 5UNJ Kd = 0.24 uM RJW C28 H34 O CCCCCCC1=C....
2 4QJR Kd = 80 nM PIZ C41 H82 O22 P4 CCCCCCCCCC....
3 3F7D - P42 C42 H88 N O8 P CCCCCCCCCC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: P42; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 P42 1 1
2 DPV 0.485294 0.826923
3 PCF 0.470588 0.87037
4 MC3 0.470588 0.87037
5 PC1 0.470588 0.87037
6 PFS 0.46988 0.87037
7 L9R 0.44086 0.854545
8 POV 0.44086 0.854545
9 LBN 0.44086 0.854545
Similar Ligands (3D)
Ligand no: 1; Ligand: P42; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4QJR; Ligand: PIZ; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4qjr.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
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