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Receptor
PDB id Resolution Class Description Source Keywords
3EC1 2.36 Å EC: 3.-.-.- STRUCTURE OF YQEH GTPASE FROM GEOBACILLUS STEAROTHERMOPHILUS (AN ATNOS1 / ATNOA1 ORTHOLOG) GEOBACILLUS STEAROTHERMOPHILUS YQEH ATNOS1 ATNOA1 GTPASE TRAP PVHL HYDROLASE SIGNALING PROTEIN
Ref.: THE STRUCTURE OF YQEH. AN ATNOS1/ATNOA1 ORTHOLOG THAT COUPLES GTP HYDROLYSIS TO MOLECULAR RECOGNITION. J.BIOL.CHEM. V. 283 32968 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:900;
B:900;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3EC1 2.36 Å EC: 3.-.-.- STRUCTURE OF YQEH GTPASE FROM GEOBACILLUS STEAROTHERMOPHILUS (AN ATNOS1 / ATNOA1 ORTHOLOG) GEOBACILLUS STEAROTHERMOPHILUS YQEH ATNOS1 ATNOA1 GTPASE TRAP PVHL HYDROLASE SIGNALING PROTEIN
Ref.: THE STRUCTURE OF YQEH. AN ATNOS1/ATNOA1 ORTHOLOG THAT COUPLES GTP HYDROLYSIS TO MOLECULAR RECOGNITION. J.BIOL.CHEM. V. 283 32968 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3EC1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3EC1; Ligand: GDP; Similar sites found with APoc: 652
This union binding pocket(no: 1) in the query (biounit: 3ec1.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1UPT GTP None
2 1KK1 GNP 1.08401
3 3DC4 ADP 1.16279
4 1NST A3P 1.23077
5 5GOE GDP 1.35501
6 1K6M AGS 1.35501
7 5ZBR ANP 1.35501
8 5AHO TLA 1.4881
9 1P9B GDP 1.62602
10 5I34 GDP 1.62602
11 1V8K ANP 1.62602
12 1XP8 AGS 1.62602
13 1W5T ANP 1.62602
14 1W5T ADP 1.62602
15 3ZFD ANP 1.7094
16 1T3D CYS 1.7301
17 4X1Z FUC GAL NDG 1.80723
18 3FYH ADP 1.86335
19 4IDN GNP 1.89702
20 4XGU ADP 1.89702
21 1Q20 PLO 2.00669
22 1Q20 A3P 2.00669
23 4GLL NAD 2.07715
24 2GKS ADP 2.16802
25 6A20 ADP 2.16802
26 4HSE ADP 2.16802
27 3GE7 AFQ 2.16802
28 4IEE AGS 2.16802
29 5Y6N ADP 2.16802
30 1OYY AGS 2.16802
31 2Q2Y ADP 2.17984
32 2Q2Y MKR 2.17984
33 4BFW ZVW 2.20126
34 4GOX A3P 2.23642
35 2FNA ADP 2.2409
36 1YRB GDP 2.29008
37 4NON GDP 2.30769
38 5AK0 8V1 2.43902
39 2NCD ADP 2.43902
40 2J5V PCA 2.45232
41 5WRI A3P 2.5
42 3LRE ADP 2.53521
43 5U32 GDP 2.54237
44 1SVK ALF GDP 2.54958
45 5GVR LMR 2.5641
46 3KO8 NAD 2.5641
47 3SXN COA 2.60664
48 5WRJ A3P 2.64026
49 1JJ7 ADP 2.69231
50 4KVA GTP 2.71003
51 1G41 ADP 2.71003
52 2I4I AMP 2.71003
53 4FCW ADP 2.71003
54 5TVJ COA 2.71003
55 5ZYN FAD 2.71003
56 1G3M A3P 2.72109
57 1G3M PCQ 2.72109
58 4V03 ADP 2.72374
59 2BEK ATP 2.72374
60 1Y3A GDP 2.73556
61 5KF9 ACO 2.7439
62 2OM2 GDP 2.76923
63 1BG2 ADP 2.76923
64 3TMK T5A 2.77778
65 3FIU POP 2.81124
66 5EE5 GTP 2.8169
67 2XTZ GSP 2.82486
68 1BH2 GSP 2.85714
69 1T5C ADP 2.86533
70 3FWY ADP 2.86624
71 2C78 GNP 2.98103
72 4ZKD GDP 2.98103
73 2C77 GNP 2.98103
74 5HR5 ADP 2.98103
75 4YJ1 ADP 2.98103
76 2CE7 ADP 2.98103
77 1NY5 ADP 2.98103
78 3RC3 ANP 2.98103
79 5Z69 AGS 2.98103
80 1IID NHM 2.98103
81 2ORV 4TA 2.99145
82 4GBM A3P 3.09598
83 4B5W PYR 3.125
84 4PPF FLC 3.14286
85 5TIV A3P 3.16206
86 5CK5 GDP 3.16456
87 1F9V ADP 3.17003
88 1OFH ADP 3.22581
89 4LJ9 ACP 3.24484
90 4H1V GNP 3.25203
91 5WC2 ADP 3.25203
92 4R43 GDP 3.25203
93 3FKQ ATP 3.25203
94 3P4X ADP 3.25203
95 4YS0 ADP 3.25203
96 2XAU ADP 3.25203
97 1Z6T ADP 3.25203
98 2ZJ5 ADP 3.25203
99 2YNC YNC 3.25203
100 4PJ3 ANP 3.25203
101 2ZFI ADP 3.27869
102 3BOS CDP 3.30579
103 1M7G AV2 3.31754
104 1M7G ADX 3.31754
105 1M7G ADP 3.31754
106 1E2K TMC 3.32326
107 3T34 GDP 3.33333
108 5L3V GDP 3.34448
109 3E70 GDP 3.35366
110 5IFS ADP 3.37553
111 1KO8 6PG 3.42857
112 2VVG ADP 3.42857
113 2OBM ADP 3.45821
114 4RD0 GDP 3.52304
115 6AU6 GDP 3.52304
116 2FAH GDP 3.52304
117 1YTM ATP 3.52304
118 4PFO ADP 3.52304
119 5H68 AGS 3.52941
120 3WR7 COA 3.52941
121 2Y65 ADP 3.56164
122 1ZUI SKM 3.57143
123 1W4R TTP 3.58974
124 1IN4 ADP 3.59281
125 3NHB ADP 3.59477
126 2RCN GDP 3.63128
127 3H86 AP5 3.64583
128 1T8U UAP SGN IDS SGN 3.67647
129 1T8U A3P 3.67647
130 1ION ADP 3.7037
131 1SKQ GDP 3.79404
132 3COB ADP 3.79404
133 1WDT GTP 3.79404
134 2BIF SIN 3.79404
135 2BIF ANP 3.79404
136 4ZDJ UTP 3.79404
137 5K5Z ANP 3.82166
138 3CX8 GSP 3.84615
139 3Q9L ATP 3.84615
140 1B7T ADP 3.84615
141 1VG8 GNP 3.86473
142 5L3W GDP 3.92157
143 4LYA ATP 3.9356
144 2QG6 NMN 4.0201
145 2R4V GSH 4.04858
146 5L3S GNP 4.05405
147 5TSH ADP 4.06504
148 5JCP GDP ALF 4.06504
149 5TSH ANP 4.06504
150 2DPY ADP 4.06504
151 3H4S ADP 4.06504
152 1OS1 ATP 4.06504
153 1OS1 PYR 4.06504
154 4FRZ ADP 4.06504
155 4IHQ ADP 4.06504
156 6C90 ADP 4.06504
157 5ZXD ATP 4.06504
158 5M7P ADP 4.06504
159 1SVM ATP 4.06504
160 2GK6 ADP 4.06504
161 3TBK ANP 4.06504
162 2A2C ADP 4.06504
163 2A2C NG1 4.06504
164 5NM7 GLY 4.13534
165 1YVD GNP 4.14201
166 3ITJ CIT 4.14201
167 2V5K OXM 4.18118
168 1G3Q ADP 4.21941
169 1GOJ ADP 4.22535
170 4D81 ADP 4.24028
171 2VBQ BSJ 4.24242
172 1KK8 BEF ADP 4.31655
173 1VG1 GDP 4.32432
174 1VG0 GDP 4.33604
175 1VG9 GDP 4.33604
176 2C9O ADP 4.33604
177 5MZN ADP 4.33604
178 3B7G ANP 4.34783
179 5MEX SZZ 4.34783
180 5MEX PAP 4.34783
181 2XT3 ADP 4.36047
182 1D2N ANP 4.41176
183 2ZR9 DTP 4.58453
184 4J0Q GDP 4.60705
185 5XDR ADP 4.60705
186 5VGR GDP 4.64037
187 2PL3 ADP 4.66102
188 4P4T GDP 4.72222
189 3QVV 3QV 4.74576
190 3QVV A3P 4.74576
191 1XPJ TLA 4.7619
192 6H5E ANP 4.78088
193 4PX9 ADP 4.79452
194 5X40 ACP 4.79452
195 1CJW COT 4.81928
196 4WZ6 ATP 4.82759
197 1JJV ATP 4.85437
198 4U00 ADP 4.91803
199 2B8T THM 4.93274
200 3N5C GDP 4.93827
201 3PCR GTP 4.93827
202 3ZQ6 ADP ALF 4.93827
203 1RRC ADP 4.98339
204 3IIJ ADP 5
205 5EXT ADP 5
206 2F9L GDP 5.02513
207 2OZE AGS 5.03356
208 2ZPA ADP 5.06706
209 1CR1 TTP 5.06757
210 4TTQ ATP 5.11628
211 3KJI ADP 5.11811
212 1FNN ADP 5.14139
213 1TQ4 GDP 5.14905
214 5KSZ GCP 5.14905
215 4A4Z ANP 5.14905
216 2D7D ADP 5.14905
217 2JLR ANP 5.14905
218 2ZTS ADP 5.17928
219 1CS4 GSP 5.18868
220 5KSP GDP 5.26316
221 6CS8 F9Y 5.28053
222 4QOS ADP 5.28302
223 5UIV ADP 5.28634
224 6BYF CIT 5.29412
225 3QXC ATP 5.3719
226 2WHX ADP 5.42005
227 2O0J ADP 5.42005
228 5N69 ADP 5.42005
229 1VHT BA3 5.50459
230 5IRR GSP 5.51948
231 4DKX GDP 5.55556
232 1D5C GDP 5.55556
233 4JLV ADP 5.57621
234 3QKT ANP 5.60472
235 1X1R GDP 5.61798
236 6B8B ADP 5.62249
237 5VHC BEF ADP 5.69106
238 6B4K ANP 5.69106
239 2Z5F A3P 5.7047
240 4RZ3 ADP 5.76271
241 2OFW ADX 5.76923
242 1DAK ADP 5.80357
243 1DAK DPU 5.80357
244 1Z06 GNP 5.82011
245 5BQ5 ADP BEF 5.82011
246 5WDR GNP 5.84795
247 1GWN GTP 5.85366
248 2KIN ADP 5.88235
249 1AKY AP5 5.90909
250 1QF5 GDP 5.96206
251 1QF5 RPL 5.96206
252 4NU0 AP5 5.99078
253 4MKF AP5 5.99078
254 4MKG AP5 5.99078
255 5XKT GNP 6
256 3FB4 AP5 6.01852
257 1AQU A3P 6.06061
258 1ZCB GDP 6.07735
259 3AB3 GDP 6.09756
260 2PZE ATP 6.11354
261 2Y8E GNP 6.14525
262 2A5F GTP 6.21762
263 1OXV ANP 6.23229
264 4C2X NHW 6.23306
265 4LHW GNP 6.32184
266 5UWQ GNP 6.32911
267 5UWO GNP 6.32911
268 5UWP GNP 6.32911
269 5UWR GNP 6.32911
270 5UWW GNP 6.32911
271 6CIT GNP 6.32911
272 5UWS GNP 6.32911
273 5DHF GNP 6.32911
274 5DIF GNP 6.32911
275 5UWU GNP 6.32911
276 5UWI GNP 6.32911
277 5UWJ GNP 6.32911
278 5UWT GNP 6.32911
279 5DI9 GNP 6.32911
280 2CBZ ATP 6.32911
281 1G7C 5GP 6.38298
282 1L2T ATP 6.38298
283 1UKZ ADP 6.40394
284 3FVQ ATP 6.40669
285 4KVX ACO 6.41026
286 5WQP NCA 6.41026
287 3QBT GNP 6.42857
288 2BME GNP 6.45161
289 1S3G AP5 6.45161
290 2CDN ADP 6.46766
291 1YZQ GNP 6.47059
292 1LVK MNT BEF 6.50407
293 2WSA 646 6.50407
294 2WSA MYA 6.50407
295 1M7B GTP 6.52174
296 1Y63 ADP 6.52174
297 2QQ0 THM 6.52174
298 2QQ0 ANP 6.52174
299 2QQ0 ADP 6.52174
300 2QQ0 TMP 6.52174
301 1WMA NDP 6.52174
302 1WMA AB3 6.52174
303 1BO4 COA 6.54762
304 3B5J 12D 6.58436
305 4HDO GNP 6.58683
306 4HDQ GNP 6.58683
307 3X1Z GNP 6.58683
308 1Z83 AP5 6.63265
309 2OG2 MLI 6.68524
310 1YZG GDP 6.70391
311 2PEZ DAT 6.70391
312 2PEZ GGZ 6.70391
313 3CPJ GDP 6.72646
314 3E5H GNP 6.74157
315 1DS6 GDP 6.77083
316 1G7S GDP 6.77507
317 4OHY ANP 6.77507
318 5BYK OAQ 6.77507
319 5BYK A3P 6.77507
320 6FAA ADP 6.77507
321 3V2U ATP 6.77507
322 3GJ7 GDP 6.78733
323 3GJ8 GDP 6.78733
324 3GJ5 GDP 6.78733
325 5MVR ADP 6.79012
326 2IL4 COA 6.79612
327 4CVN ADP 6.80628
328 4KAX GTP 6.8323
329 5UAV NDP 6.8323
330 5UAV TFB 6.8323
331 4DDY DN6 6.84411
332 3M1I GTP 6.84932
333 3WYF GTP 6.84932
334 4GOJ GNP 6.87831
335 2W58 ADP 6.93069
336 4HAT GNP 6.94444
337 2FFQ GSP 7.01754
338 4YDS ATP 7.01754
339 4DCT GDP 7.04607
340 1F5N GNP 7.04607
341 1X6V ADP 7.04607
342 5FHD ADP ALF 7.04607
343 5FTB ANP 7.04607
344 5ZB0 TYD 7.07071
345 5ZB0 ADP 7.07071
346 3Q85 GNP 7.10059
347 5OEC GDP 7.10383
348 1FQJ GDP 7.14286
349 3BD9 A3P 7.14286
350 1S7N COA 7.14286
351 1FZQ GDP 7.18232
352 2QTV GNP 7.18563
353 3LN9 FLC 7.19424
354 1I0B PEL 7.22892
355 5Z2M GTP 7.24638
356 4ZG4 VO4 ADP 7.31707
357 5LB3 ADP 7.31707
358 1W0J ADP 7.35294
359 1W0J ADP BEF 7.35294
360 5XFV FMN 7.48503
361 2EFE GNH 7.49064
362 4Q1A 2XZ 7.5
363 4Q1A UDP 7.5
364 2ZE7 DST 7.50988
365 2ZE7 AMP 7.50988
366 2CHG ANP 7.52212
367 4HI0 GDP 7.53769
368 1LVG ADP 7.57576
369 1XMV ADP 7.58427
370 3VMF GTP 7.58808
371 2IYL GDP 7.58808
372 1RJ9 GCP 7.58808
373 3MKN DNB 7.59494
374 2YOH WMJ 7.61905
375 3A4M ADP 7.69231
376 3KTA AP5 7.69231
377 1KUV CA5 7.72947
378 3BFV ADP 7.74908
379 1P72 ADP 7.78443
380 4NE2 ADP 7.78443
381 4NE2 SH2 7.78443
382 2FSH ANP 7.85908
383 3DZD ADP 7.88043
384 1S8F GDP 7.9096
385 5OCG GNP 7.93651
386 5UQW GDP 7.93651
387 3B9Q MLI 7.94702
388 4BQS ADP 7.95455
389 4BQS K2Q 7.95455
390 2J0V GDP 8.01887
391 5M04 GDP 8.05556
392 5H4S RAM 8.09859
393 5TAR GDP 8.10811
394 3RWO GDP 8.10811
395 5TB5 GDP 8.10811
396 1DAR GDP 8.13008
397 1G6H ADP 8.17121
398 5L3R GCP 8.19113
399 3WYG GTP 8.24176
400 5UPK GNP 8.33333
401 5J1S ATP 8.3682
402 4ITR GDP 8.37696
403 5FG3 GDP 8.40108
404 2GCN GDP 8.40108
405 2GCO GNP 8.40108
406 5LTJ ADP 8.40108
407 3EWA ANP 8.40108
408 2WMO GTP 8.42105
409 6BSX GDP 8.42697
410 6BSX E7S 8.42697
411 3Q72 GNP 8.43373
412 3UIE ANP 8.5
413 1WA5 GTP 8.52273
414 3WXM GTP 8.67209
415 1Z0K GTP 8.69565
416 1SQ5 ADP 8.76623
417 4K81 GTP 8.77193
418 3IUY AMP 8.77193
419 1B0U ATP 8.77863
420 1KY3 GDP 8.79121
421 1GXU 2HP 8.79121
422 5HCN GCP 8.81226
423 5K04 COA 8.82353
424 5O2T GSP 8.87574
425 5IRN ADP 8.94309
426 4UDB CV7 8.94309
427 4U5X GNP 8.98876
428 3DDC GNP 9.03614
429 1CLU DBG 9.03614
430 3KUD GDP 9.03614
431 2WKQ GTP 9.03614
432 2UZI GTP 9.03614
433 2WOJ ADP ALF 9.03955
434 3ZS9 ADP ALF 9.03955
435 4XVU ATP 9.03955
436 5LEF GTP 9.09091
437 3MGB PAP 9.09091
438 3IO3 ADP 9.1954
439 3WY9 GDP 9.21409
440 3WYA GDP 9.21409
441 3GJX GTP 9.21409
442 1XKV ATP 9.21409
443 1NN5 2DT 9.30233
444 1NN5 ANP 9.30233
445 4WOP CTP 9.33333
446 6AIC AMP 9.34579
447 4TMK T5A 9.38967
448 5HGZ ACO 9.46502
449 1M2O GNP 9.47368
450 1VKJ A3P 9.47368
451 4IOK XPO 9.4851
452 4IOK ADP 9.4851
453 3EZ2 ADP 9.4851
454 2IS6 ADP 9.4851
455 4YSX FAD 9.61539
456 1ZIN AP5 9.67742
457 6CRK GDP 9.7561
458 1IWE IMP 9.7561
459 4OI4 ATP 9.7561
460 1R0X ATP 9.79021
461 3BFX A3P 9.7973
462 5SZH GNP 9.85222
463 3DOE GTP 9.89583
464 1W7J ADP BEF 9.93377
465 3T12 GDP ALF 10.101
466 3T1O GDP 10.101
467 5MWY YNU 10.1639
468 5L7G 6QE 10.1639
469 5H7K GDP 10.2981
470 5H7J GCP 10.2981
471 1NJF AGS 10.4
472 1NJF ADP 10.4
473 4DID GDP 10.5263
474 4YC7 GNP 10.5691
475 4ZNL BEF ADP 10.5839
476 5KDO GDP 10.5882
477 1EK0 GNP 10.5882
478 5G3Y ADP 10.6195
479 2F3R G5P 10.628
480 4TL6 ANP 10.6719
481 2X7I CIT 10.7143
482 1H65 GDP 10.7407
483 4B47 GDP 10.7438
484 4X8O AP5 10.7477
485 5G41 AP5 10.7623
486 4XTR ATP 10.8108
487 4XTR ADP 10.8108
488 1JI0 ATP 10.8333
489 5O74 GDP 11.1111
490 5KUT GDP 11.1111
491 5I0H ADP BEF 11.1111
492 1G16 GDP 11.1765
493 2FH5 GTP 11.215
494 3A1S GDP 11.2403
495 3BER AMP 11.245
496 1ZJ6 G3D 11.3821
497 1ZD9 GDP 11.3821
498 1IHU ADP 11.3821
499 1IHU AF3 11.3821
500 2VB6 ADP BEF 11.4094
501 3NKV GNP 11.4286
502 3DKP ADP 11.4286
503 3TNF GNP 11.6531
504 4YMU ATP 11.6667
505 1Z0F GDP 11.7318
506 1FP6 ADP 11.7647
507 1KSH GDP 11.8421
508 3T5G GDP 11.8421
509 5J1J ANP 11.9298
510 3GJ4 GDP 12.1212
511 1R4A GNP 12.1212
512 4YLG GDP 12.1387
513 5BN3 ADP 12.1951
514 5JCZ GDP 12.2905
515 2A9K GDP 12.2995
516 4WZA ACP 12.3188
517 4WZA ADP 12.3188
518 4V0K GDP 12.426
519 4LX0 BEF GDP 12.4294
520 1NHX FTB 12.4661
521 1NHX PEP 12.4661
522 2GMV UN8 12.4661
523 2GMV PEP 12.4661
524 4R98 GNH 12.5461
525 1OIV GDP 12.5654
526 1OIX GDP 12.5654
527 4D0G GTP 12.5714
528 1KAO GDP 12.5749
529 1F6B GDP 12.6263
530 5W75 GDP 12.7371
531 1F2U ATP 12.7517
532 2C5L GTP 12.8205
533 2HF9 GSP 12.8319
534 5HCV 60R 12.8405
535 1QF9 ALF 12.8866
536 1QF9 C5P 12.8866
537 1QF9 ADP 12.8866
538 2EW1 GNP 12.9353
539 5W76 GDP 12.987
540 5E5U MLI 13.0653
541 2VWT PYR 13.1086
542 5W7Q GDP 13.1367
543 5K2M ADP 13.2075
544 5DI3 GNP 13.308
545 3PQC GDP 13.3333
546 1YZN GNP 13.5135
547 2ZEJ GDP 13.587
548 2BCG GDP 13.5922
549 1U8Z GDP 13.6905
550 4R2I ANP 13.8095
551 4C4P GNP 13.8728
552 2QN6 GDP 13.9785
553 2V7Q ATP 14
554 2CK3 ANP 14
555 2CK3 ADP 14
556 3QF7 ANP 14
557 2V7Q ADP 14
558 4LPS GDP 14.0496
559 2CJW GDP 14.0625
560 1XX6 ADP 14.1361
561 3DEF GDP 14.5038
562 1PUJ GNP 14.539
563 2A5J GDP 14.6597
564 1NRJ GTP 14.6789
565 3TKL GTP 14.7959
566 4KOT CE3 14.8148
567 1Z2A GDP 14.881
568 4QM7 GTP 15.2047
569 3CH5 GDP 15.3846
570 4M9Q GNP 15.4185
571 3TK1 GDP 15.4545
572 3U6B GDP 15.4822
573 4P3Y GDP 15.4822
574 5JBQ GDP 15.4822
575 4G5G GDP 15.4822
576 3U6K GDP 15.4822
577 4PC3 GDP 15.4822
578 2HT6 GDP 15.5172
579 1Z0A GDP 15.5172
580 1D8T GDP 15.5216
581 2BVN GNP 15.5216
582 4BAS GNP 15.9892
583 2AWN ADP 15.9892
584 3RLF ANP 15.9892
585 2RGX AP5 16.0194
586 3SFV GDP 16.0221
587 3W5J GDP 16.1765
588 1HTW ADP 16.4557
589 2WIC GNP 16.4794
590 4E03 ADP 16.5049
591 1RYH GNP 16.7488
592 4D0N GDP 16.7568
593 3LXR GDP 16.7568
594 6BCB GSP 16.7568
595 6BCA GSP 16.7568
596 5HPY GDP 16.7568
597 6BC0 GSP 16.7568
598 2W83 GTP 16.8831
599 1UJ2 ADP 17.0635
600 1UJ2 C5P 17.0635
601 1D2E GDP 17.0732
602 4XSH GSP 17.3184
603 4QRH 0O2 17.619
604 3SBD GNP 17.6471
605 1I4D GDP 17.7083
606 1E96 GTP 17.7083
607 4XOI GTP 17.7778
608 3BC1 GNP 17.9487
609 2X77 GDP 17.9894
610 2HCJ GDP 18.209
611 1MH1 GNP 18.2796
612 3CNL GNP 18.3206
613 1G4U GDP 18.4783
614 4ZI2 GNP 18.797
615 1MKY GDP 18.9702
616 4GDX GLU 18.9744
617 2FJU GSP 19.1011
618 1TU3 GNP 19.2982
619 1HE1 GDP 19.3182
620 1R2Q GNP 19.4118
621 1U0J ADP 19.4757
622 2ODE ALF GDP 19.8582
623 4NCN GTP 20.5962
624 1XEX ATP 20.9302
625 4UXH T5A 21.1957
626 3ZIA ATP 21.3115
627 3ZIA ADP 21.3115
628 1GUA GNP 21.5569
629 5E95 GDP 21.6495
630 2WJG GDP 21.8085
631 1RE0 GDP 21.9512
632 1S9D GDP 21.9512
633 4KVG GTP 22.0238
634 4TMZ GSP 22.029
635 1O3Y GTP 22.2892
636 2J59 GTP 22.2892
637 1J2J GTP 22.2892
638 1ZC3 GNP 22.8571
639 1Z0J GTP 23.7288
640 1MR3 G3D 23.7569
641 3AQ4 GDP 23.913
642 3GJ3 GDP 24.2424
643 2QZ4 ADP 24.4275
644 2WJH GDP 24.6988
645 2WJH FLC 24.6988
646 5H67 ATP 25
647 1UAD GNP 25.2525
648 1Z08 GNP 26.4706
649 2W2X GSP 27.4194
650 5YT0 GDP 28.5714
651 5UWH GNP 36.3636
652 3MJH GTP 38.2353
Pocket No.: 2; Query (leader) PDB : 3EC1; Ligand: GDP; Similar sites found with APoc: 90
This union binding pocket(no: 2) in the query (biounit: 3ec1.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 5FVJ ACO None
2 5ZHO A2G GLA FUC 0.617284
3 4AG9 COA 1.21212
4 5MU6 MYA 1.35501
5 5MU6 KFK 1.35501
6 1X8J A3P 1.4245
7 2JAQ DCP 1.46341
8 2ZW5 COA 1.66113
9 2JEV NHQ 1.72414
10 2B4D COA 1.75439
11 4B5P ACO 2
12 2JJK R15 2.07101
13 3KC1 2T6 2.07715
14 4AVB ACO 2.1021
15 5GK9 ACO 2.17391
16 1P0H ACO 2.20126
17 1P0H COA 2.20126
18 1FL2 FAD 2.25806
19 2WPW ACO 2.35988
20 1J78 OLA 2.43902
21 2WPX ACO 2.65487
22 5TVJ 7LF 2.71003
23 3D2M COA 2.71003
24 4B9Q ATP 2.71003
25 5KF9 NAG 2.7439
26 5KF9 COA 2.7439
27 1GHE ACO 2.82486
28 5H86 BCO 2.97619
29 5CUQ NSC 2.99625
30 1H74 ADP 3.04054
31 1IYK MYA 3.25203
32 4ITM ATP 3.49206
33 3CV2 OXL 3.79404
34 3WQT ANP 3.79404
35 3C3N FMN 3.84615
36 4NTO 1PW 3.86473
37 4H6U ACO 4
38 3RK1 ATP 4.21941
39 4UTG ANP 4.33526
40 3E1T FAD 4.60705
41 4R3L COA 4.62428
42 6G28 AR6 4.63215
43 3F8D FAD 4.64396
44 5LOG SAH 4.72103
45 2V2V V12 4.79705
46 1TIQ COA 5
47 1N71 COA 5
48 2ZPA ACO 5.06706
49 2VOH CIT 5.09554
50 1QSM ACO 5.26316
51 2WW4 ADP 5.30035
52 4U9W COA 5.31401
53 3VPB ADP 5.35714
54 6APV 3L4 5.42005
55 6G96 ACO 5.68182
56 2ZPT A3P 5.76271
57 4NSQ COA 5.78947
58 5BU2 ADP 5.96206
59 1BOB ACO 6.25
60 3F8K COA 6.25
61 1WWZ ACO 6.28931
62 1CM0 COA 6.54762
63 4CRZ ACO 6.56934
64 3IQE F42 7.06714
65 4L80 OXL 7.18391
66 1VI2 NAD 7.33333
67 2GWH A3P 7.38255
68 3R96 AMP 7.44681
69 3R96 ACO 7.44681
70 4QC6 30N 7.82123
71 1PUA COA 7.97546
72 1QSR ACO 8.02469
73 1Q2D COA 8.02469
74 4HUT ATP 8.37696
75 2CNT COA 8.75
76 2XWL CTP 8.96861
77 4R57 ACO 11.3636
78 5YGE ACO 11.4943
79 5YGE GLU 11.4943
80 1I1D 16G 11.8012
81 1I1D COA 11.8012
82 5BUK FAD 12.7371
83 1OBV FMN 13.6095
84 2W9S NDP 15.528
85 1V0C KNC 15.8416
86 1V0C ACO 15.8416
87 2ZFZ ARG 16.4557
88 4JLS 3ZE 17.1053
89 3TE4 ACO 18.6047
90 5LS7 ACO 29.2683
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