Receptor
PDB id Resolution Class Description Source Keywords
3EBL 1.9 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF RICE GID1 COMPLEXED WITH GA4 ORYZA SATIVA SUBSP. JAPONICA ALPHA/BETA HYDROLASE LIPASE GIBBERELLIN SIGNALING PATHWAYHYDROLASE NUCLEUS RECEPTOR HYDROLASE RECEPTOR
Ref.: STRUCTURAL BASIS FOR GIBBERELLIN RECOGNITION BY ITS GID1. NATURE V. 456 520 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GA4 A:401;
B:401;
C:401;
D:401;
E:401;
F:401;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
Kd = 0.5 uM
332.391 C19 H24 O5 C[C@@...
MPD A:501;
B:501;
C:501;
D:501;
E:501;
F:501;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
NO3 A:601;
A:602;
A:603;
A:604;
B:601;
B:602;
B:604;
C:601;
C:602;
C:603;
C:604;
D:601;
D:602;
D:603;
E:601;
F:601;
F:602;
F:603;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.005 N O3 [N+](...
PO4 B:701;
E:701;
Invalid;
Invalid;
none;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3EBL 1.9 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF RICE GID1 COMPLEXED WITH GA4 ORYZA SATIVA SUBSP. JAPONICA ALPHA/BETA HYDROLASE LIPASE GIBBERELLIN SIGNALING PATHWAYHYDROLASE NUCLEUS RECEPTOR HYDROLASE RECEPTOR
Ref.: STRUCTURAL BASIS FOR GIBBERELLIN RECOGNITION BY ITS GID1. NATURE V. 456 520 2008
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3EBL Kd = 0.5 uM GA4 C19 H24 O5 C[C@@]12[C....
2 3ED1 - GA3 C19 H22 O6 C[C@@]12[C....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3EBL Kd = 0.5 uM GA4 C19 H24 O5 C[C@@]12[C....
2 3ED1 - GA3 C19 H22 O6 C[C@@]12[C....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3EBL Kd = 0.5 uM GA4 C19 H24 O5 C[C@@]12[C....
2 3ED1 - GA3 C19 H22 O6 C[C@@]12[C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GA4; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 GA4 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3ebl.bio8) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3ebl.bio8) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3ebl.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3ebl.bio4) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 3ebl.bio2) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 3ebl.bio9) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 3ebl.bio9) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 3ebl.bio7) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 3ebl.bio7) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 3ebl.bio5) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 3ebl.bio6) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 3EBL; Ligand: GA4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 3ebl.bio3) has 23 residues
No: Leader PDB Ligand Sequence Similarity
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