-->
Receptor
PDB id Resolution Class Description Source Keywords
3DZD 2.4 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF SIGMA54 ACTIVATOR NTRC4 IN THE INACTIVE STATE AQUIFEX AEOLICUS SIGMA43 ACTIVATOR AAA+ ATPASE RESPONSE REGULATOR TRANSCRIPTIONAL ACTIVATOR ATP-BINDING NUCLEOTIDE-BINDINGTRANSCRIPTION TRANSCRIPTION REGULATION TRANSCRIPTION REGULATOR
Ref.: STRUCTURE AND REGULATORY MECHANISM OF AQUIFEX AEOLICUS NTRC4: VARIABILITY AND EVOLUTION IN BACTERIAL TRANSCRIPTIONAL REGULATION. J.MOL.BIOL. V. 384 1058 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP A:370;
B:370;
Valid;
Valid;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
NA B:1;
Invalid;
none;
submit data
22.99 Na [Na+]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3DZD 2.4 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF SIGMA54 ACTIVATOR NTRC4 IN THE INACTIVE STATE AQUIFEX AEOLICUS SIGMA43 ACTIVATOR AAA+ ATPASE RESPONSE REGULATOR TRANSCRIPTIONAL ACTIVATOR ATP-BINDING NUCLEOTIDE-BINDINGTRANSCRIPTION TRANSCRIPTION REGULATION TRANSCRIPTION REGULATOR
Ref.: STRUCTURE AND REGULATORY MECHANISM OF AQUIFEX AEOLICUS NTRC4: VARIABILITY AND EVOLUTION IN BACTERIAL TRANSCRIPTIONAL REGULATION. J.MOL.BIOL. V. 384 1058 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3DZD - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3DZD - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3DZD - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 1NY5 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
3 5M7P Kd = 70 uM ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3DZD; Ligand: ADP; Similar sites found with APoc: 681
This union binding pocket(no: 1) in the query (biounit: 3dzd.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 1Z0A GDP None
2 2A5J GDP None
3 6DEF GCP 1.3587
4 4FRZ ADP 1.3587
5 2WOJ ADP ALF 1.41243
6 3COB ADP 1.63043
7 1IWE IMP 1.63043
8 2AJ4 ANP 1.63043
9 5H68 AGS 1.76471
10 4NE2 ADP 1.79641
11 4NE2 SH2 1.79641
12 1TAD GDP 1.85185
13 1TAD ALF 1.85185
14 2XZ9 PYR 1.85185
15 3EWA ANP 1.86335
16 2VWT PYR 1.87266
17 5WC2 ADP 1.90217
18 4J0Q GDP 1.90217
19 5LTJ ADP 1.90217
20 5LTJ BEF 1.90217
21 2BO4 FLC 1.90217
22 4IOK XPO 1.90217
23 4IOK ADP 1.90217
24 4KBF AMP 1.91781
25 1SQ5 ADP 1.94805
26 3LRE ADP 1.97183
27 2ZR9 DTP 2.00573
28 1F9V ADP 2.01729
29 4TMZ GSP 2.02899
30 3B5J 12D 2.05761
31 1VDC FAD 2.1021
32 2B8W ALF 5GP 2.13415
33 1ZJ6 G3D 2.13904
34 4Q1A 2XZ 2.14286
35 4Q1A UDP 2.14286
36 4LYA ATP 2.17391
37 5GOE GDP 2.17391
38 2NCD ADP 2.17391
39 5VGR GDP 2.17391
40 4W93 3L9 2.17391
41 2ZFI ADP 2.18579
42 1XP8 AGS 2.18579
43 4BFW ZVW 2.20126
44 2HF9 GSP 2.21239
45 5HVJ ANP 2.22222
46 1YZG GDP 2.23464
47 4GOX A3P 2.23642
48 3MD0 GDP 2.25352
49 3GJ0 GDP 2.26244
50 1YRB GDP 2.29008
51 3IO3 ADP 2.29885
52 3CH5 GDP 2.31481
53 1IBR GNP 2.31481
54 3B9Q MLI 2.31788
55 1H74 ADP 2.36486
56 1P72 ADP 2.39521
57 3TK1 GDP 2.42424
58 2RGX AP5 2.42718
59 3U6B GDP 2.44565
60 4YS0 ADP 2.44565
61 3U6K GDP 2.44565
62 4IDN GNP 2.44565
63 5JBQ GDP 2.44565
64 5JCP GDP ALF 2.44565
65 1XKV ATP 2.44565
66 4H1V GNP 2.44565
67 1D8T GDP 2.44565
68 4G5G GDP 2.44565
69 2BVN GNP 2.44565
70 1GQ2 NAP 2.44565
71 3RC3 ANP 2.44565
72 4P4T GDP 2.5
73 5WRI A3P 2.5
74 1J6X MET 2.5
75 3KDU NKS 2.52708
76 1SVK ALF GDP 2.54958
77 1OXV ANP 2.54958
78 1GP2 GDP 2.54958
79 4ZNL BEF ADP 2.55474
80 3PQC GDP 2.5641
81 3DOE GTP 2.60417
82 3DC4 ADP 2.61628
83 5WRJ A3P 2.64026
84 5KUT GDP 2.6455
85 4DDY DN6 2.6616
86 5HCN GCP 2.68199
87 1AQU A3P 2.6936
88 2WKQ GTP 2.71084
89 2ZPT A3P 2.71186
90 2WHX ADP 2.71739
91 4AG5 ADP 2.71739
92 4IHQ ADP 2.71739
93 4ZDJ UTP 2.71739
94 2JLR ANP 2.71739
95 5W7Q GDP 2.71739
96 4LY9 S6P 2.71739
97 4LY9 1YY 2.71739
98 1VBH PEP 2.71739
99 2O0J ADP 2.71739
100 4YJ1 ADP 2.71739
101 1DNP MHF 2.71739
102 5OC1 FAD 2.71739
103 1Y3A GDP 2.73556
104 2OM2 GDP 2.76923
105 1FQJ GDP 2.76923
106 1FQK GDP 2.76923
107 3FVQ ATP 2.78552
108 4KFU ACP 2.83019
109 4PC3 GDP 2.83688
110 3GUZ PAF 2.84091
111 1BH2 GSP 2.85714
112 4UTG ANP 2.89017
113 5IRR GSP 2.92208
114 5XDT MB3 2.92208
115 1IZC PYR 2.94985
116 3QKT ANP 2.94985
117 1H65 GDP 2.96296
118 5U32 GDP 2.9661
119 5TSH ADP 2.98913
120 5TSH ANP 2.98913
121 2DPY ADP 2.98913
122 1WDT GTP 2.98913
123 6B4K ANP 2.98913
124 2BIF SIN 2.98913
125 2BIF ANP 2.98913
126 2AWN ADP 2.98913
127 1WF3 GNP 2.99003
128 5L3R GCP 2.99003
129 3DEF GDP 3.05344
130 3THR C2F 3.07167
131 1J99 AND 3.07167
132 2ZX2 RAM 3.07692
133 1X8J A3P 3.1339
134 3MGB PAP 3.1348
135 5G41 AP5 3.13901
136 1VKJ A3P 3.15789
137 3BD9 A3P 3.21429
138 3FKQ ATP 3.21716
139 1ZIN AP5 3.22581
140 4MKF AP5 3.22581
141 1S3G AP5 3.22581
142 4NU0 AP5 3.22581
143 4MKG AP5 3.22581
144 3FB4 AP5 3.24074
145 1V8K ANP 3.26087
146 4ZKD GDP 3.26087
147 5W76 GDP 3.26087
148 5MZN ADP 3.26087
149 1SVM ATP 3.26087
150 1Q19 SSC 3.26087
151 1P9B GDP 3.26087
152 1Q19 APC 3.26087
153 2Y65 ADP 3.28767
154 2RCN GDP 3.35196
155 3E5H GNP 3.37079
156 1G3Q ADP 3.37553
157 1CR1 TTP 3.37838
158 5YVT NAI 3.38983
159 3ZFD ANP 3.4188
160 3W5J GDP 3.43137
161 2OBM ADP 3.45821
162 4YLG GDP 3.46821
163 2EW1 GNP 3.48259
164 5H4S RAM 3.52113
165 6A20 ADP 3.53261
166 5KSZ GCP 3.53261
167 1F5N GNP 3.53261
168 5ZBR ANP 3.53261
169 1YQT ADP 3.53261
170 5XDR ADP 3.53261
171 5YV5 ADP 3.53261
172 4XFR CIT 3.53261
173 5G3Y ADP 3.53982
174 1Z83 AP5 3.57143
175 1SVI GDP 3.58974
176 2D2F ADP 3.6
177 1J2J GTP 3.61446
178 1O3Y GTP 3.61446
179 4IN9 SER TRP PHE PRO 3.61446
180 2OG2 MLI 3.62117
181 1AKY AP5 3.63636
182 2FNA ADP 3.64146
183 1D2N ANP 3.67647
184 1T8U A3P 3.67647
185 1T8U UAP SGN IDS SGN 3.67647
186 1BG2 ADP 3.69231
187 4DKX GDP 3.7037
188 4TTQ ATP 3.72093
189 2GDJ ANP 3.78788
190 2C9O ADP 3.80435
191 5IRN ADP 3.80435
192 1G41 ADP 3.80435
193 4R2I ANP 3.80952
194 3A4M ADP 3.84615
195 1FDJ 13P 3.85675
196 2EFE GNH 3.8674
197 5XKT GNP 4
198 4GBM A3P 4.02477
199 3T1O GDP 4.0404
200 3BFX A3P 4.05405
201 1TQ4 GDP 4.07609
202 3WY9 GDP 4.07609
203 3WYA GDP 4.07609
204 1NHX FTB 4.07609
205 1NHX PEP 4.07609
206 1QF5 RPL 4.07609
207 1QF5 GDP 4.07609
208 2GMV UN8 4.07609
209 2GMV PEP 4.07609
210 5I0H ADP BEF 4.07609
211 1OYY AGS 4.07609
212 4JLV ADP 4.08922
213 3BC1 GNP 4.10256
214 1QF9 ALF 4.12371
215 1QF9 C5P 4.12371
216 1QF9 ADP 4.12371
217 3QXC ATP 4.13223
218 2QEN ADP 4.28571
219 3MB5 SAM 4.31373
220 5MVR ADP 4.32099
221 5ZXD ATP 4.34783
222 3ZQ6 ADP ALF 4.34783
223 1X6V ADP 4.34783
224 1QHG ATP 4.34783
225 4R43 GDP 4.34783
226 5H7K GDP 4.34783
227 1MKY GDP 4.34783
228 6FAA ADP 4.34783
229 5HR5 ADP 4.34783
230 5H7J GCP 4.34783
231 2ALG DAO 4.34783
232 5I34 GDP 4.34783
233 2GWH A3P 4.36242
234 4LC1 GDP 4.45104
235 3FWY ADP 4.4586
236 2Y8E GNP 4.46927
237 1NE7 16G 4.49827
238 5XC5 GTP 4.54545
239 1NF3 GNP 4.61538
240 1FNN ADP 4.61957
241 4KVA GTP 4.61957
242 6AU6 GDP 4.61957
243 1CS4 GSP 4.61957
244 2D7D ADP 4.61957
245 3GJX GTP 4.61957
246 4PFO ADP 4.61957
247 5MEX SZZ 4.65839
248 5MEX PAP 4.65839
249 1G6H ADP 4.66926
250 2FFQ GSP 4.67836
251 5EE5 GTP 4.67836
252 1L2T ATP 4.68085
253 1YZQ GNP 4.70588
254 4ITR GDP 4.71204
255 1A4R GDP 4.71204
256 1A4R GNH 4.71204
257 5BXQ GDP 4.72441
258 2WMO GTP 4.73684
259 1M7G AV2 4.73934
260 1M7G ADX 4.73934
261 1M7G ADP 4.73934
262 5BQ5 ADP BEF 4.7619
263 2J59 GTP 4.7619
264 5K5Z ANP 4.77707
265 2WJG GDP 4.78723
266 2PZE ATP 4.80349
267 1JPA ANP 4.80769
268 5IRC GDP 4.83871
269 1JJV ATP 4.85437
270 4PPF FLC 4.85714
271 4D0N GDP 4.86486
272 5HPY GDP 4.86486
273 1WA5 GTP 4.8913
274 1KMQ GNP 4.8913
275 5Y6N ADP 4.8913
276 3DKP ADP 4.89796
277 2XT3 ADP 4.94186
278 4YC7 GNP 4.97238
279 5BYK A3P 5.01931
280 5BYK OAQ 5.01931
281 4XSH GSP 5.02793
282 1F6B GDP 5.05051
283 1XMV ADP 5.05618
284 1TX4 ALF GDP 5.08475
285 3TMK T5A 5.09259
286 1NN5 2DT 5.11628
287 1NN5 ANP 5.11628
288 2ZE7 DST 5.13834
289 2ZE7 AMP 5.13834
290 5TIV A3P 5.13834
291 3T12 GDP ALF 5.14706
292 1UJ2 ADP 5.15873
293 1UJ2 C5P 5.15873
294 3VMF GTP 5.16304
295 1LVK MNT BEF 5.16304
296 6C90 ADP 5.16304
297 1KC7 PPR 5.16304
298 1FP6 ADP 5.19031
299 6FA4 GNP 5.20231
300 5L3W GDP 5.22876
301 1RJ9 GCP 5.26316
302 5NM7 GLY 5.26316
303 4ZI2 GNP 5.26316
304 5M04 GDP 5.27778
305 5DI3 GNP 5.32319
306 4E03 ADP 5.33981
307 1GOJ ADP 5.35211
308 4LPS GDP 5.3719
309 1MH1 GNP 5.37634
310 5CK5 GDP 5.37975
311 4NON GDP 5.38462
312 4LAE NAP 5.38922
313 4LAE 1VM 5.38922
314 2WJH GDP 5.42169
315 2WJH FLC 5.42169
316 4PJ3 ANP 5.43478
317 5LB3 ADP 5.43478
318 4A4Z ANP 5.43478
319 1GZ4 ATP 5.43478
320 2A2C NG1 5.43478
321 2A2C ADP 5.43478
322 3KVY R2B 5.50162
323 3SFV GDP 5.52486
324 1FZQ GDP 5.52486
325 5O74 GDP 5.55556
326 1D5C GDP 5.55556
327 6B8B ADP 5.62249
328 2IYL GDP 5.6338
329 5LLB 6YZ 5.70342
330 4OI4 ATP 5.70652
331 3H86 AP5 5.70652
332 2VVG ADP 5.71429
333 3NKV GNP 5.71429
334 1KO8 6PG 5.71429
335 4QRH 0O2 5.71429
336 2A5F GTP 5.71429
337 2CJW GDP 5.72917
338 4U00 ADP 5.7377
339 1E2K TMC 5.74018
340 4LHW GNP 5.74713
341 1G6O ADP 5.75758
342 3A1S GDP 5.81395
343 5WDR GNP 5.84795
344 1G16 GDP 5.88235
345 2GK6 ADP 5.97826
346 2ZEJ GDP 5.97826
347 3M1I GTP 5.97826
348 4DCT GDP 5.97826
349 3WYF GTP 5.97826
350 2FAH GDP 5.97826
351 5E5U MLI 6.03015
352 4BAS GNP 6.03015
353 5E5U MLT 6.03015
354 5LEF GTP 6.06061
355 1OE0 TTP 6.08696
356 1HEX NAD 6.08696
357 1DS6 GDP 6.11111
358 1Z0F GDP 6.14525
359 1NST A3P 6.15385
360 3Q9L ATP 6.15385
361 6BCB GSP 6.16438
362 4M9Q GNP 6.1674
363 3N5C GDP 6.17284
364 3PCR GTP 6.17284
365 2YOH WMJ 6.19048
366 4XT8 NAP 6.20155
367 5FTB ANP 6.25
368 5FHD ADP ALF 6.25
369 2IS6 ADP 6.25
370 1DAK DPU 6.25
371 1DAK ADP 6.25
372 4WZA ACP 6.25
373 4WZA ADP 6.25
374 3LXR GDP 6.25
375 1OS1 ATP 6.25
376 1OS1 PYR 6.25
377 5W75 SUC 6.25
378 5W75 GDP 6.25
379 5KSP GDP 6.31579
380 5OCG GNP 6.34921
381 1UKZ ADP 6.40394
382 3BER AMP 6.4257
383 4QM7 GTP 6.43275
384 5TB5 GDP 6.48649
385 5TAR GDP 6.48649
386 2XTZ GSP 6.49718
387 3Q85 GNP 6.50888
388 3RAB GNP 6.50888
389 1K6M AGS 6.52174
390 3WXM GTP 6.52174
391 3P4X ADP 6.52174
392 1ZUI SKM 6.54762
393 4YDS ATP 6.57895
394 3Q72 GNP 6.62651
395 6BC0 GSP 6.66667
396 4XOI GTP 6.66667
397 2VB6 ADP BEF 6.71141
398 3TKL GTP 6.74157
399 2CE7 ADP 6.79348
400 1W0J ADP 6.79348
401 3TBK ANP 6.79348
402 2XAU ADP 6.79348
403 1W0J ADP BEF 6.79348
404 2NGR GDP 6.83761
405 2XTN GTP 6.83761
406 5X40 ACP 6.84932
407 4OGQ 7PH 6.875
408 2A9K GDP 6.95187
409 1CXZ GSP 6.97674
410 4ITM ATP 6.98413
411 2BME GNP 6.98925
412 3BFV ADP 7.01107
413 1TU3 GNP 7.01754
414 1YZN GNP 7.02703
415 5N69 ADP 7.03518
416 2OZE AGS 7.04698
417 1R2Q GNP 7.05882
418 1EK0 GNP 7.05882
419 1Y63 ADP 7.06522
420 2FSH ANP 7.06522
421 2QQ0 ADP 7.06522
422 2QQ0 TMP 7.06522
423 2QQ0 ANP 7.06522
424 2QQ0 THM 7.06522
425 3EZ2 ADP 7.06522
426 2GKS ADP 7.06522
427 5X8G S0N 7.06522
428 2ZJ5 ADP 7.06522
429 5ZB0 ADP 7.07071
430 5ZB0 TYD 7.07071
431 4GOJ GNP 7.08333
432 3MJH GTP 7.14286
433 3T5G GDP 7.18232
434 5SZH GNP 7.18954
435 5BSH PRO 7.22022
436 2W2X GSP 7.25806
437 1W7J ADP BEF 7.28477
438 6BSX E7S 7.30337
439 6BSX GDP 7.30337
440 1XX6 ADP 7.32984
441 6CRK GDP 7.33591
442 5BN3 ADP 7.33696
443 2J5V PCA 7.35695
444 2Z5F A3P 7.38255
445 4BQS ADP 7.38636
446 4BQS K2Q 7.38636
447 2X77 GDP 7.40741
448 2W58 ADP 7.42574
449 1UAD GNP 7.42857
450 4URS C2E 7.44681
451 2CDN ADP 7.46269
452 6AIC AMP 7.47664
453 3SBD GNP 7.48663
454 2CK3 ANP 7.53425
455 2CK3 ADP 7.53425
456 2F9L GDP 7.53769
457 5H67 ATP 7.53769
458 1Z0K GTP 7.55814
459 1HTW ADP 7.59494
460 1G4U GDP 7.6087
461 1Z6T ADP 7.6087
462 4YRY FAD 7.6087
463 3CPJ GDP 7.62332
464 1Z08 GNP 7.64706
465 5OEC GDP 7.65027
466 2ZL4 ALA ALA ALA ALA 7.65306
467 2OFW ADX 7.69231
468 4KVG GTP 7.69231
469 1VG0 GDP 7.72947
470 1VG8 GNP 7.72947
471 1MR3 G3D 7.73481
472 1U8Z GDP 7.7381
473 3IIJ ADP 7.77778
474 6G14 G4P 7.82313
475 1OIX GDP 7.8534
476 1OIV GDP 7.8534
477 2FJU GSP 7.86517
478 4XGU ADP 7.88043
479 1YTM ATP 7.88043
480 3EC1 GDP 7.88043
481 1GRN GDP 7.88177
482 1HE1 GDP 7.95455
483 1RRC ADP 7.97342
484 1ZD9 GDP 7.97872
485 3QBT GNP 8.04598
486 3TNF GNP 8.04598
487 4KAX GTP 8.07453
488 1LVG ADP 8.08081
489 3RWO GDP 8.10811
490 3V2U ATP 8.15217
491 4YMU ATP 8.18182
492 1GOT GDP 8.21918
493 1KY3 GDP 8.24176
494 3KJI ADP 8.26772
495 4V0K GDP 8.28402
496 4XVU ATP 8.29493
497 4XTR ATP 8.29493
498 4XTR ADP 8.29493
499 2ZTS ADP 8.36653
500 2QZ4 ADP 8.39695
501 4OHY ANP 8.42391
502 1B0U ATP 8.42391
503 2X7I CIT 8.44156
504 4LX0 BEF GDP 8.47458
505 1S8F GDP 8.47458
506 2V2V V12 8.48709
507 3UIE ANP 8.5
508 1RE0 GDP 8.53659
509 4DID GDP 8.55263
510 4WZ6 ATP 8.62069
511 1VG1 GDP 8.64865
512 1VG9 GDP 8.64865
513 1JI0 ATP 8.75
514 1GXU 2HP 8.79121
515 1S9D GDP 8.86699
516 3VX3 ADP 8.87097
517 3H4S ADP 8.88889
518 1I4D GDP 8.92857
519 2PEZ GGZ 8.93855
520 2PEZ DAT 8.93855
521 2GCO GNP 8.95522
522 2GCN GDP 8.95522
523 2C78 GNP 8.96739
524 2C77 GNP 8.96739
525 5AK0 8V1 8.96739
526 2IXE ATP 8.96739
527 2I4I AMP 8.96739
528 1B7T ADP 8.97436
529 1R0X ATP 9.09091
530 5Z2M GTP 9.09091
531 1T5C ADP 9.16905
532 3AQ4 GDP 9.23913
533 3KTA AP5 9.24856
534 1XEX ATP 9.30233
535 3QVV A3P 9.49153
536 3QVV 3QV 9.49153
537 2QTV GNP 9.51087
538 1M2O GNP 9.51087
539 1G3M A3P 9.52381
540 1G3M PCQ 9.52381
541 2QG6 NMN 9.54774
542 3AB3 GDP 9.66851
543 1ZCB GDP 9.66851
544 3CNL GNP 9.92366
545 1UPT GTP 10
546 1KK8 BEF ADP 10.0719
547 2KIN ADP 10.084
548 1NRJ GTP 10.1266
549 1QHH ATP 10.1796
550 2ORV 4TA 10.2564
551 4C4P GNP 10.2804
552 1PUJ GNP 10.2837
553 3CX8 GSP 10.355
554 2O66 FLC 10.3704
555 1JJ7 ADP 10.3846
556 6BCA GSP 10.596
557 5KDO GDP 10.8108
558 4UXH T5A 10.8696
559 2HV8 GTP 10.9375
560 3NHB ADP 11.1111
561 5UQW GDP 11.1111
562 1NJF ADP 11.2
563 1NJF AGS 11.2
564 2JAQ DCP 11.2195
565 3B7G ANP 11.3043
566 2J0V GDP 11.3208
567 1OW3 GDP 11.399
568 4HSE ADP 11.413
569 4P3Y GDP 11.5385
570 1GWN GTP 11.7073
571 1R4A GNP 11.7647
572 1RYH GNP 11.8227
573 1YVD GNP 11.8343
574 5J1J ANP 11.9298
575 1ION ADP 11.9342
576 4PX9 ADP 11.9863
577 1J6W MET 12
578 3RLF ANP 12.1622
579 4R98 GNH 12.1771
580 1OFH ADP 12.2581
581 2Q2Y MKR 12.2616
582 2Q2Y ADP 12.2616
583 1W4R TTP 12.3077
584 5UIV ADP 12.3348
585 3REF GDP 12.3711
586 5O2T GSP 12.426
587 1R6B ADP 12.5
588 2BCG GDP 12.6214
589 5WLB GNP 12.6506
590 4TMK T5A 12.6761
591 5VHC BEF ADP 12.7717
592 2W83 GTP 12.987
593 4USI AKG 12.987
594 1M7B GTP 13.0435
595 4RZ3 ADP 13.0435
596 3ZS9 ADP ALF 13.1579
597 3X1Z GNP 13.1737
598 4HDQ GNP 13.1737
599 4HDO GNP 13.1737
600 2G77 GDP 13.587
601 1IHU AF3 13.587
602 1IHU ADP 13.587
603 5GVR LMR 13.6752
604 1VHT BA3 13.7615
605 4WOP CTP 13.7778
606 2HT6 GDP 13.7931
607 2PL3 ADP 13.9831
608 3QF7 ANP 14
609 4U5X GNP 14.0449
610 1E96 GTP 14.2857
611 4V03 ADP 14.3969
612 2ZPA ADP 14.4022
613 4HI0 GDP 14.5729
614 1Z06 GNP 14.8148
615 3ZIA ATP 14.9457
616 3ZIA ADP 14.9457
617 4X8O AP5 14.9533
618 1KSH GDP 15.0538
619 2GJ8 ALF GDP 15.1163
620 1X1R GDP 15.1685
621 4ZG4 VO4 ADP 15.2174
622 1Z0J GTP 15.2542
623 3IUY AMP 15.3509
624 2FH5 GTP 15.8879
625 1GUA GNP 16.0494
626 1Q20 PLO 16.388
627 1Q20 A3P 16.388
628 2D7C GTP 16.6667
629 5JCZ GDP 16.8478
630 3WYG GTP 17.1053
631 4D0G GTP 17.3913
632 2F3R G5P 17.3913
633 2WIC GNP 17.603
634 3E70 GDP 18.2927
635 2CBZ ATP 18.5654
636 4TL6 ANP 18.5771
637 4D81 ADP 18.7279
638 3T34 GDP 18.8889
639 1KAO GDP 19.1617
640 2V7Q ATP 19.697
641 2V7Q ADP 19.697
642 4CVN ADP 20.438
643 5J1S ATP 21.1382
644 4AVV CD 22.0588
645 4AVV GHE 22.0588
646 5L3V GDP 22.7425
647 5L3S GNP 22.8188
648 5UPK GNP 22.9167
649 5IFS ADP 24.1848
650 3HU3 AGS 24.1848
651 2C5L GTP 24.8555
652 4K81 GTP 25.1462
653 5E95 GDP 25.5952
654 6BVJ GNP 25.7485
655 1LFD GNP 25.7485
656 1CLU DBG 25.9036
657 3DDC GNP 25.9036
658 3KUD GDP 25.9036
659 1WQ1 GDP 25.9036
660 2UZI GTP 25.9036
661 2ODE ALF GDP 26.2411
662 6BVM GNP 26.3473
663 6BVL GNP 26.3473
664 6BVI GNP 26.3473
665 6BVK GNP 26.3473
666 6D56 GNP 26.3473
667 6D5H GNP 26.3473
668 6D59 GNP 26.3473
669 6D5G GNP 26.3473
670 6D5M GNP 26.3473
671 6D5L GNP 26.3473
672 6D5V GNP 26.3473
673 6D5E GNP 26.3473
674 6D5J GNP 26.3473
675 6D55 GNP 26.3473
676 1NVV GNP 26.506
677 1ZC3 GNP 27.4336
678 4LJ9 ACP 33.3333
679 4FCW ADP 36.0129
680 1Z2A GDP 36.3095
681 4C2W ANP 44.2308
Pocket No.: 2; Query (leader) PDB : 3DZD; Ligand: ADP; Similar sites found with APoc: 33
This union binding pocket(no: 2) in the query (biounit: 3dzd.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 5FJJ MAN 1.90217
2 1DLJ NAI 1.90217
3 4PTN PYR 2.62391
4 3A16 PXO 2.71739
5 4LH7 NMN 2.78638
6 6G47 SIA 2.87081
7 3VET ADP 3.26087
8 3VET CP 3.26087
9 4JD3 PLM 4.24929
10 4JD3 COA 4.24929
11 2GMP NAG MAN 4.7619
12 3LZW FAD 4.81928
13 1N7G NDP 4.8913
14 4CNK FAD 5.16304
15 5OOH 9ZZ 5.33981
16 5OOH NAP 5.33981
17 3A4V PYR 5.36278
18 3A4V NAD 5.36278
19 4R1S NAP 5.63798
20 4XT8 TMQ 6.20155
21 4Z7X 3CX 6.72269
22 3NRZ FAD 7.86885
23 4URG C2E 8.38323
24 5C8W PCG 9.09091
25 5MB4 NAG 9.23913
26 2B8T THM 9.41704
27 4WEI GLC GAL 9.74729
28 6C0B MLI 10.0543
29 1DL7 NCH 10.0917
30 4WOE 3S5 12.2283
31 1T0S BML 12.7907
32 5F90 LMR 13.4615
33 3FIU POP 14.0562
APoc FAQ
Feedback