Receptor
PDB id Resolution Class Description Source Keywords
3DNJ 1.15 Å EC: 3.-.-.- THE STRUCTURE OF THE CAULOBACTER CRESCENTUS CLPS PROTEASE AD PROTEIN IN COMPLEX WITH A N-END RULE PEPTIDE CAULOBACTER VIBRIOIDES ADAPTOR PROTEIN-PEPTIDE COMPLEX PEPTIDE BINDING PROTEIN
Ref.: THE MOLECULAR BASIS OF N-END RULE RECOGNITION. MOL.CELL V. 32 406 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG A:1;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
TYR LEU PHE VAL GLN ARG ASP SER LYS GLU C:1;
D:1;
Valid;
Valid;
none;
none;
submit data
350.439 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3DNJ 1.15 Å EC: 3.-.-.- THE STRUCTURE OF THE CAULOBACTER CRESCENTUS CLPS PROTEASE AD PROTEIN IN COMPLEX WITH A N-END RULE PEPTIDE CAULOBACTER VIBRIOIDES ADAPTOR PROTEIN-PEPTIDE COMPLEX PEPTIDE BINDING PROTEIN
Ref.: THE MOLECULAR BASIS OF N-END RULE RECOGNITION. MOL.CELL V. 32 406 2008
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 3DNJ - TYR LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
2 3G1B - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
3 3GW1 - PHE GLY GLY n/a n/a
4 3G19 - LEU LEU LEU n/a n/a
5 3GQ1 - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 3DNJ - TYR LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
2 3G1B - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
3 3GW1 - PHE GLY GLY n/a n/a
4 3G19 - LEU LEU LEU n/a n/a
5 3GQ1 - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 3O2B - PHE ARG SER LYS GLY GLU GLU LEU PHE THR n/a n/a
2 2WA8 Kd = 3.8 uM PHE ARG SER LYS GLY GLU GLU LEU PHE THR n/a n/a
3 3DNJ - TYR LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
4 3G1B - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
5 3GW1 - PHE GLY GLY n/a n/a
6 3G19 - LEU LEU LEU n/a n/a
7 3GQ1 - TRP LEU PHE VAL GLN ARG ASP SER LYS GLU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: TYR LEU PHE VAL GLN ARG ASP SER LYS GLU; Similar ligands found: 26
No: Ligand ECFP6 Tc MDL keys Tc
1 TYR LEU PHE VAL GLN ARG ASP SER LYS GLU 1 1
2 TYR LEU ASP SER GLY ILE HIS SER GLY ALA 0.64 0.847826
3 GLN LEU ALA 0.553846 0.714286
4 TYR SER ALA 0.550725 0.782609
5 TYR LEU GLY ALA ASN GLY 0.511364 0.795918
6 TYR TRP ALA ALA ALA ALA 0.494505 0.770833
7 TYR LEU VAL VAL VAL GLY ALA VAL GLY VAL 0.494505 0.847826
8 PHE LEU SER TYR LYS 0.478723 0.735849
9 PHE LEU ALA TYR LYS 0.478723 0.795918
10 SER LEU LEU LYS LYS LEU LEU LEU ALA 0.473684 0.627451
11 TYR GLN SER LYS LEU 0.461538 0.75
12 TYR GLY GLY PHE LEU 0.450549 0.795918
13 TYR ASP GLN ILE LEU 0.445652 0.866667
14 TYR GLN PHE 0.444444 0.777778
15 PHE LEU SER THR LYS 0.43617 0.705882
16 PHE ARG TYR LEU GLY 0.43 0.696429
17 GLY LEU TYR ALA SER LYS LEU ALA 0.428571 0.75
18 TRP LEU PHE VAL GLN ARG ASP SER LYS GLU 0.422222 0.708333
19 LYS LEU LEU PHE 0.421687 0.717391
20 ALA ALA SER LEU TYR GLU LYS LYS ALA ALA 0.419048 0.735849
21 PHE LEU GLU LYS 0.411111 0.708333
22 SER LEU TYR LEU THR VAL ALA THR LEU 0.41 0.829787
23 ASP LEU TYR CYS TYR GLU GLN LEU ASN 0.40566 0.735849
24 SER LYS TYR GLY LEU GLN ASP 0.4 0.844444
25 PHE TYR ARG TYR GLY PHE VAL ALA ASN PHE 0.4 0.660377
26 TYR VAL ASP GLY ALA 0.4 0.791667
Similar Ligands (3D)
Ligand no: 1; Ligand: TYR LEU PHE VAL GLN ARG ASP SER LYS GLU; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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