Receptor
PDB id Resolution Class Description Source Keywords
3CYQ 2.3 Å NON-ENZYME: OTHER THE CRYSTAL STRUCTURE OF THE COMPLEX OF THE C-TERMINAL DOMAI HELICOBACTER PYLORI MOTB (RESIDUES 125-256) WITH N-ACETYLMU HELICOBACTER PYLORI HELICOBACTER PYLORI BACTERIAL FLAGELLAR MOTOR PEPTIDOGLYCABINDING BACTERIAL FLAGELLUM CHEMOTAXIS FLAGELLAR ROTATIOMEMBRANE MEMBRANE TRANSMEMBRANE MEMBRANE PROTEIN
Ref.: CRYSTAL STRUCTURE OF THE CELL WALL ANCHOR DOMAIN OF STATOR COMPONENT OF THE BACTERIAL FLAGELLAR MOTOR: IMPLICATIONS FOR PEPTIDOGLYCAN RECOGNITION. PROC.NATL.ACAD.SCI.USA 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AMU D:5;
K:2;
Valid;
Valid;
none;
none;
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293.27 C11 H19 N O8 C[C@H...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3CYQ 2.3 Å NON-ENZYME: OTHER THE CRYSTAL STRUCTURE OF THE COMPLEX OF THE C-TERMINAL DOMAI HELICOBACTER PYLORI MOTB (RESIDUES 125-256) WITH N-ACETYLMU HELICOBACTER PYLORI HELICOBACTER PYLORI BACTERIAL FLAGELLAR MOTOR PEPTIDOGLYCABINDING BACTERIAL FLAGELLUM CHEMOTAXIS FLAGELLAR ROTATIOMEMBRANE MEMBRANE TRANSMEMBRANE MEMBRANE PROTEIN
Ref.: CRYSTAL STRUCTURE OF THE CELL WALL ANCHOR DOMAIN OF STATOR COMPONENT OF THE BACTERIAL FLAGELLAR MOTOR: IMPLICATIONS FOR PEPTIDOGLYCAN RECOGNITION. PROC.NATL.ACAD.SCI.USA 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3CYQ - AMU C11 H19 N O8 C[C@H](C(=....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3CYQ - AMU C11 H19 N O8 C[C@H](C(=....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3CYQ - AMU C11 H19 N O8 C[C@H](C(=....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AMU; Similar ligands found: 40
No: Ligand ECFP6 Tc MDL keys Tc
1 AMU 1 1
2 491 0.603175 0.759259
3 MU2 0.578947 0.843137
4 3LT 0.565789 0.843137
5 A2G GAL 0.539683 0.87234
6 GAL NGA 0.539683 0.87234
7 GAL A2G 0.539683 0.87234
8 MUR 0.525424 0.863636
9 NAG BDP 0.514706 0.875
10 AH0 0.507692 0.833333
11 NAG NGA 0.492537 0.895833
12 NAG A2G 0.492537 0.895833
13 HSQ 0.490909 0.930233
14 NDG 0.490909 0.930233
15 NGA 0.490909 0.930233
16 A2G 0.490909 0.930233
17 NAG 0.490909 0.930233
18 BM3 0.490909 0.930233
19 GC4 NAG 0.465753 0.875
20 UCD 0.459459 0.857143
21 NAG MUB 0.448718 0.86
22 NAG AMU 0.448718 0.86
23 DR3 0.447368 0.893617
24 AMU ALA GMA LYS NH2 0.4375 0.767857
25 GAD NDG 0.434211 0.84
26 GCD NGA 0.434211 0.84
27 NAG GAD 0.434211 0.84
28 NGA GCD 0.434211 0.84
29 SNG 0.42623 0.851064
30 ASG 0.415385 0.683333
31 NAG GAL 0.414286 0.87234
32 GAL NAG 0.414286 0.87234
33 NAG BDP NAG BDP 0.413043 0.811321
34 AMU ALA GMA LYS DAL DAL NH2 0.407767 0.767857
35 NLC 0.405797 0.87234
36 GAL NDG 0.405797 0.87234
37 NDG GAL 0.405797 0.87234
38 MUB ALA ZGL ALY DAL NH2 0.403846 0.741379
39 GAL NDG FUC 0.402597 0.893617
40 FUC NDG GAL 0.402597 0.893617
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3CYQ; Ligand: AMU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3cyq.bio10) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3CYQ; Ligand: AMU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3cyq.bio8) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3CYQ; Ligand: AMU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3cyq.bio9) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 3CYQ; Ligand: AMU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 3cyq.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
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