Receptor
PDB id Resolution Class Description Source Keywords
3C3N 2.2 Å EC: 1.3.3.1 CRYSTAL STRUCTURE OF DIHYDROOROTATE DEHYDROGENASE FROM TRYPA CRUZI STRAIN Y TRYPANOSOMA CRUZI DHODH TRYPANOSOMA CRUZI STRAIN Y DIHYDROOROTATE DEHYDROGENPYRD OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTA DEHYDROGENASE FROM Y STRAIN BIOCHEM.BIOPHYS.RES.COMMUN. V. 369 812 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMN A:315;
B:315;
C:316;
D:316;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
456.344 C17 H21 N4 O9 P Cc1cc...
GOL A:316;
A:317;
B:316;
C:2;
D:317;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
 submit data
92.094 C3 H8 O3 C(C(C...
SO4 A:600;
B:600;
C:600;
D:600;
 Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
 submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3C3N 2.2 Å EC: 1.3.3.1 CRYSTAL STRUCTURE OF DIHYDROOROTATE DEHYDROGENASE FROM TRYPA CRUZI STRAIN Y TRYPANOSOMA CRUZI DHODH TRYPANOSOMA CRUZI STRAIN Y DIHYDROOROTATE DEHYDROGENPYRD OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTA DEHYDROGENASE FROM Y STRAIN BIOCHEM.BIOPHYS.RES.COMMUN. V. 369 812 2008
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 3C3N - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 2E6D - FUM C4 H4 O4 C(=C/C(=O)....
70% Homology Family (21)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3C3N - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 2E6D - FUM C4 H4 O4 C(=C/C(=O)....
3 4WZH - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
4 1JQX Kd = 95 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
5 1JQV Kd = 117 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
6 2DOR - ORO C5 H4 N2 O4 C1=C(NC(=O....
7 1DOR - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
8 1JRB Kd = 1450 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
9 1JUE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
10 1OVD Kd = 7.6 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
11 1JRC Kd = 44 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
12 2BX7 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
13 2BSL Kd = 8 uM DHB C7 H6 O4 c1cc(c(cc1....
14 1JUB - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
15 4EF8 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
16 3MJY Ki = 82.8 uM IJZ C5 H5 N3 O4 C1(=C(NC(=....
17 4EF9 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
18 3MHU Ki = 212.93 uM EJZ C5 H3 N3 O6 C1(=C(NC(=....
19 3TQ0 - FUM C4 H4 O4 C(=C/C(=O)....
20 2B4G - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
21 5XFV Kd = 0.000000012 uM FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (22)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3C3N - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 2E6D - FUM C4 H4 O4 C(=C/C(=O)....
3 4WZH - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
4 1JQX Kd = 95 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
5 1JQV Kd = 117 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
6 2DOR - ORO C5 H4 N2 O4 C1=C(NC(=O....
7 1DOR - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
8 1JRB Kd = 1450 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
9 1JUE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
10 1OVD Kd = 7.6 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
11 1JRC Kd = 44 uM ORO C5 H4 N2 O4 C1=C(NC(=O....
12 2BX7 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
13 2BSL Kd = 8 uM DHB C7 H6 O4 c1cc(c(cc1....
14 1JUB - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
15 4EF8 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
16 3MJY Ki = 82.8 uM IJZ C5 H5 N3 O4 C1(=C(NC(=....
17 4EF9 - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
18 3MHU Ki = 212.93 uM EJZ C5 H3 N3 O6 C1(=C(NC(=....
19 3TQ0 - FUM C4 H4 O4 C(=C/C(=O)....
20 2B4G - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
21 5XFV Kd = 0.000000012 uM FMN C17 H21 N4 O9 P Cc1cc2c(cc....
22 3OIX - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FMN; Similar ligands found: 17
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 9O9 0.574468 0.934211
4 RS3 0.571429 0.831169
5 FAD 0.543307 0.876543
6 FAS 0.543307 0.876543
7 FAE 0.539062 0.865854
8 5DD 0.475248 0.972603
9 LFN 0.475 0.643836
10 C3F 0.473684 0.74359
11 CF4 0.463918 0.734177
12 FAY 0.446043 0.864198
13 FNR 0.444444 0.909091
14 RFL 0.442857 0.845238
15 4LS 0.411215 0.875
16 1VY 0.406593 0.769231
17 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3C3N; Ligand: FMN; Similar sites found with APoc: 12
This union binding pocket(no: 1) in the query (biounit: 3c3n.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1TV5 FMN 14.7436
2 1TV5 FMN 14.7436
3 1GTE IUR 27.5641
4 1GTE FMN 27.5641
5 1GTE FMN 27.5641
6 1GTE IUR 27.5641
7 1UUO ORO 42.6282
8 1UUO BRF 42.6282
9 1UUO FMN 42.6282
10 4ORM 2V6 44.5513
11 4ORM FMN 44.5513
12 4ORM ORO 44.5513
Pocket No.: 2; Query (leader) PDB : 3C3N; Ligand: FMN; Similar sites found with APoc: 12
This union binding pocket(no: 2) in the query (biounit: 3c3n.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 1TV5 FMN 14.7436
2 1TV5 FMN 14.7436
3 1GTE IUR 27.5641
4 1GTE FMN 27.5641
5 1GTE FMN 27.5641
6 1GTE IUR 27.5641
7 1UUO FMN 42.6282
8 1UUO ORO 42.6282
9 1UUO BRF 42.6282
10 4ORM ORO 44.5513
11 4ORM 2V6 44.5513
12 4ORM FMN 44.5513
Pocket No.: 3; Query (leader) PDB : 3C3N; Ligand: FMN; Similar sites found with APoc: 10
This union binding pocket(no: 3) in the query (biounit: 3c3n.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 1TV5 ORO 14.7436
2 1TV5 ORO 14.7436
3 1TV5 FMN 14.7436
4 1TV5 FMN 14.7436
5 1UUO FMN 42.6282
6 1UUO BRF 42.6282
7 1UUO ORO 42.6282
8 4ORM ORO 44.5513
9 4ORM FMN 44.5513
10 4ORM 2V6 44.5513
Pocket No.: 4; Query (leader) PDB : 3C3N; Ligand: FMN; Similar sites found with APoc: 10
This union binding pocket(no: 4) in the query (biounit: 3c3n.bio1) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 1TV5 ORO 14.7436
2 1TV5 ORO 14.7436
3 1TV5 FMN 14.7436
4 1TV5 FMN 14.7436
5 1UUO ORO 42.6282
6 1UUO FMN 42.6282
7 1UUO BRF 42.6282
8 4ORM FMN 44.5513
9 4ORM ORO 44.5513
10 4ORM 2V6 44.5513
APoc FAQ
Feedback