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Receptor
PDB id Resolution Class Description Source Keywords
3BOS 1.75 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HD (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.75 A RESO SHEWANELLA AMAZONENSIS P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES STRUCTGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI-2 HYDROLASE REGULATOR DNA BINDIPROTEIN
Ref.: A STRUCTURAL BASIS FOR THE REGULATORY INACTIVATION J.MOL.BIOL. V. 385 368 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CDP A:300;
B:300;
Valid;
Valid;
none;
none;
submit data
403.176 C9 H15 N3 O11 P2 C1=CN...
CL B:303;
Invalid;
none;
submit data
35.453 Cl [Cl-]
EDO A:303;
A:304;
A:305;
A:306;
A:307;
A:308;
A:309;
B:304;
B:305;
B:306;
B:307;
B:308;
B:309;
B:310;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
MG A:301;
B:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
NA B:302;
Part of Protein;
none;
submit data
22.99 Na [Na+]
SCN A:302;
Invalid;
none;
submit data
58.082 C N S C(#N)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3BOS 1.75 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A PUTATIVE DNA REPLICATION REGULATOR HD (SAMA_1916) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.75 A RESO SHEWANELLA AMAZONENSIS P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES STRUCTGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI-2 HYDROLASE REGULATOR DNA BINDIPROTEIN
Ref.: A STRUCTURAL BASIS FOR THE REGULATORY INACTIVATION J.MOL.BIOL. V. 385 368 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3BOS - CDP C9 H15 N3 O11 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CDP; Similar ligands found: 91
No: Ligand ECFP6 Tc MDL keys Tc
1 CDP 1 1
2 CTP 0.895522 1
3 HF4 0.895522 1
4 CAR 0.787879 0.985507
5 C 0.787879 0.985507
6 C5P 0.787879 0.985507
7 7XL 0.77027 0.944444
8 C2G 0.74026 0.957747
9 CDC 0.725 0.82716
10 C5G 0.707317 0.944444
11 CDM 0.695122 0.894737
12 CXY 0.678571 0.944444
13 CTN 0.636364 0.857143
14 AR3 0.636364 0.857143
15 C C C C 0.623529 0.916667
16 1AA 0.619565 0.906667
17 C C 0.607143 0.929577
18 UDP 0.605263 0.942029
19 I5A 0.602941 0.816901
20 YYY 0.582278 0.90411
21 GCQ 0.560976 0.90411
22 C3P 0.56 0.942857
23 MCN 0.557692 0.819277
24 PMT 0.554455 0.85
25 91P 0.553398 0.851852
26 UTP 0.54321 0.942029
27 2AA 0.542857 0.693878
28 16B 0.538462 0.917808
29 CSV 0.536842 0.905405
30 CSQ 0.536842 0.905405
31 DCP 0.535714 0.90411
32 GTF 0.523256 0.90411
33 C2P 0.519481 0.957143
34 PCD 0.517857 0.781609
35 FN5 0.509434 0.871795
36 GPC 0.509091 0.819277
37 CSF 0.504587 0.871795
38 DKZ 0.5 0.746667
39 UNP 0.488372 0.915493
40 TKW 0.4875 0.971429
41 G C 0.481818 0.8375
42 5GW 0.477778 0.890411
43 5HM 0.47561 0.958333
44 A C A C 0.464912 0.835443
45 DC 0.463415 0.890411
46 DCM 0.463415 0.890411
47 U A C C 0.452174 0.846154
48 UPP 0.451613 0.888889
49 UDH 0.451613 0.844156
50 G8D 0.450549 0.907895
51 U 0.45 0.927536
52 U5P 0.45 0.927536
53 C5P SIA 0.447368 0.893333
54 URM 0.446809 0.876712
55 660 0.446809 0.876712
56 GDU 0.446809 0.888889
57 UFM 0.446809 0.888889
58 GUD 0.446809 0.888889
59 UPG 0.446809 0.888889
60 8OD 0.445652 0.855263
61 G G G C 0.444444 0.85
62 UPU 0.444444 0.887324
63 4GW 0.443299 0.866667
64 A G C C 0.440678 0.848101
65 DOC 0.439024 0.890411
66 M7G 0.43617 0.829268
67 UFG 0.43299 0.842105
68 UPF 0.43299 0.842105
69 U2F 0.43299 0.842105
70 2KH 0.431818 0.915493
71 G C C C 0.42623 0.860759
72 CG2 0.421053 0.873418
73 A U C C 0.420635 0.835443
74 G3N 0.42 0.890411
75 UDP UDP 0.418605 0.885714
76 UAD 0.418367 0.888889
77 UDX 0.418367 0.888889
78 44P 0.416667 0.902778
79 3UC 0.415842 0.842105
80 M7M 0.412371 0.797619
81 8GT 0.410526 0.907895
82 V12 0.41 0.75
83 UGB 0.41 0.901408
84 USQ 0.41 0.780488
85 UGA 0.41 0.901408
86 UP5 0.405405 0.857143
87 GEO 0.405063 0.783784
88 UDM 0.403846 0.864865
89 H6Y 0.402062 0.855263
90 NVG 0.401961 0.731707
91 CTP C C C C 0.4 0.915493
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3BOS; Ligand: CDP; Similar sites found with APoc: 682
This union binding pocket(no: 1) in the query (biounit: 3bos.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2FFQ GSP None
2 1DAK ADP None
3 1DAK DPU None
4 1D5C GDP None
5 2JAQ DCP None
6 4QRH 0O2 None
7 1G16 GDP None
8 4TL6 ANP None
9 4UTG ANP 0.826446
10 3FPZ AHZ 0.826446
11 3BER AMP 0.826446
12 2PZE ATP 0.873362
13 1YZG GDP 1.11732
14 4V0K GDP 1.18343
15 5HCN GCP 1.23967
16 5TIV A3P 1.23967
17 3Q9L ATP 1.23967
18 4WOP CTP 1.33333
19 4X8O AP5 1.40187
20 1XPJ TLA 1.5873
21 2BME GNP 1.6129
22 1Y63 ADP 1.63043
23 2ZEJ GDP 1.63043
24 3AQ4 GDP 1.63043
25 2WIC GNP 1.65289
26 2PZ8 APC 1.65289
27 1Z0F GDP 1.67598
28 3E5H GNP 1.68539
29 4YLG GDP 1.7341
30 3B7G ANP 1.73913
31 1YVD GNP 1.77515
32 1O3Y GTP 1.80723
33 2J59 GTP 1.80723
34 1J2J GTP 1.80723
35 1RE0 GDP 1.82927
36 1VG8 GNP 1.93237
37 2QG6 NMN 2.01005
38 1YQT ADP 2.06612
39 5YV5 ADP 2.06612
40 3DC4 ADP 2.06612
41 3A4M ADP 2.06612
42 6AU6 GDP 2.06612
43 2NCD ADP 2.06612
44 3ZQ6 ADP ALF 2.06612
45 2DPY ADP 2.06612
46 2QEN ADP 2.06612
47 1G3M PCQ 2.06612
48 1G3M A3P 2.06612
49 5MEX SZZ 2.06612
50 5MEX PAP 2.06612
51 5IRR GSP 2.06612
52 4GOX A3P 2.06612
53 3QKT ANP 2.06612
54 5KSP GDP 2.10526
55 2X77 GDP 2.1164
56 1VG1 GDP 2.16216
57 1Z0A GDP 2.29885
58 2FH5 GTP 2.33645
59 1EK0 GNP 2.35294
60 1Z08 GNP 2.35294
61 1B0U ATP 2.47934
62 3B5J 12D 2.47934
63 4P4T GDP 2.47934
64 5ZB0 ADP 2.47934
65 5ZB0 TYD 2.47934
66 1ZJ6 G3D 2.47934
67 3ZS9 ADP ALF 2.47934
68 2WOJ ADP ALF 2.47934
69 1FP6 ADP 2.47934
70 6B4K ANP 2.47934
71 1AQU A3P 2.47934
72 2B8W ALF 5GP 2.47934
73 4PFO ADP 2.47934
74 1A5Z FBP 2.47934
75 3KJI ADP 2.47934
76 5X40 ACP 2.47934
77 1F5N GNP 2.47934
78 1Q19 APC 2.47934
79 4BAS GNP 2.51256
80 2CBZ ATP 2.53165
81 5GVR LMR 2.5641
82 1V2X SAM 2.57732
83 2IXE ATP 2.58303
84 3H86 AP5 2.60417
85 4ZJS 4P0 2.6087
86 5KUT GDP 2.6455
87 2HF9 GSP 2.65487
88 3GJ0 GDP 2.71493
89 4NU0 AP5 2.76498
90 4MKG AP5 2.76498
91 3CH5 GDP 2.77778
92 2OFW ADX 2.88462
93 1JJ7 ADP 2.89256
94 1RRC ADP 2.89256
95 3WY9 GDP 2.89256
96 6DEF GCP 2.89256
97 5H68 AGS 2.89256
98 3WYA GDP 2.89256
99 2IS6 ADP 2.89256
100 5VGR GDP 2.89256
101 4JLV ADP 2.89256
102 4KBF AMP 2.89256
103 5J1J ANP 2.89256
104 4IDN GNP 2.89256
105 1DL5 SAH 2.89256
106 3P4X ADP 2.90557
107 5ZXD ATP 2.9304
108 3W5J GDP 2.94118
109 1OE0 TTP 3.04348
110 5MVR ADP 3.08642
111 3REF GDP 3.09278
112 2A5J GDP 3.14136
113 4HUT ATP 3.14136
114 5O2T GSP 3.20856
115 3TMK T5A 3.24074
116 1NN5 2DT 3.25581
117 1NN5 ANP 3.25581
118 4TMK T5A 3.28639
119 4Q1A UDP 3.30579
120 4Q1A 2XZ 3.30579
121 2OG2 MLI 3.30579
122 1OXV ANP 3.30579
123 1UJ2 ADP 3.30579
124 3B9Q MLI 3.30579
125 2CJW GDP 3.30579
126 4HSE ADP 3.30579
127 2ZFI ADP 3.30579
128 1E2K TMC 3.30579
129 4R98 GNH 3.30579
130 2FNA ADP 3.30579
131 5L3R GCP 3.30579
132 1KO8 6PG 3.30579
133 2ZTS ADP 3.30579
134 5LB3 ADP 3.30579
135 2IYL GDP 3.30579
136 5WRJ A3P 3.30579
137 5WRI A3P 3.30579
138 3EC1 GDP 3.30579
139 2FSH ANP 3.30579
140 4PJ3 ANP 3.30579
141 4HA6 FAD 3.30579
142 1QHG ATP 3.30579
143 4ZG4 VO4 ADP 3.30579
144 5UQW GDP 3.30579
145 3ITJ CIT 3.30579
146 3WXM GTP 3.30579
147 1UJ2 C5P 3.30579
148 2EFE GNH 3.31492
149 2PEZ GGZ 3.35196
150 2PEZ DAT 3.35196
151 5U32 GDP 3.38983
152 4BQS ADP 3.40909
153 4BQS K2Q 3.40909
154 2ORV 4TA 3.4188
155 1S9D GDP 3.44828
156 2CDN ADP 3.48259
157 3UIE ANP 3.5
158 1F6B GDP 3.53535
159 4KAX GTP 3.5503
160 4KAX 4IP 3.5503
161 5OEC GDP 3.5533
162 1ZUI SKM 3.57143
163 1E96 GTP 3.64583
164 1I4D GDP 3.64583
165 1XX6 ADP 3.66492
166 4MKF AP5 3.68664
167 3N5C GDP 3.7037
168 1GOJ ADP 3.71901
169 2XT3 ADP 3.71901
170 2QZ4 ADP 3.71901
171 5M04 GDP 3.71901
172 1SVM ATP 3.71901
173 3MD0 GDP 3.71901
174 1MKY GDP 3.71901
175 3QXC ATP 3.71901
176 4ZNL BEF ADP 3.71901
177 4ZKD GDP 3.71901
178 5H7K GDP 3.71901
179 5H7J GCP 3.71901
180 5WC2 ADP 3.71901
181 5MZN ADP 3.71901
182 2ZE7 AMP 3.71901
183 2ZE7 DST 3.71901
184 6C90 ADP 3.71901
185 5JCP GDP ALF 3.71901
186 4YS0 ADP 3.71901
187 5L3W GDP 3.71901
188 3IO3 ADP 3.71901
189 4H1V GNP 3.71901
190 6B8B ADP 3.71901
191 3MB5 SAM 3.71901
192 1OYY AGS 3.71901
193 2XTZ GSP 3.71901
194 2BLN FON 3.71901
195 2BLN U5P 3.71901
196 2IHU TP9 3.71901
197 2YOH WMJ 3.80952
198 1YRB GDP 3.81679
199 2F3R G5P 3.86473
200 3A1S GDP 3.87597
201 1FHX 4IP 3.87597
202 2BCG GDP 3.8835
203 4XTR ADP 3.91304
204 4XTR ATP 3.91304
205 4XVU ATP 3.91304
206 1UKZ ADP 3.94089
207 4M9Q GNP 3.96476
208 2F9L GDP 4.0201
209 2HT6 GDP 4.02299
210 2B8T THM 4.03587
211 3T1O GDP 4.0404
212 3T12 GDP ALF 4.0404
213 1XEX ATP 4.06977
214 2HV8 GTP 4.06977
215 1W4R TTP 4.10256
216 3PQC GDP 4.10256
217 1BG2 ADP 4.13223
218 1G6H ADP 4.13223
219 3U6B GDP 4.13223
220 1SVK ALF GDP 4.13223
221 5JBQ GDP 4.13223
222 4G5G GDP 4.13223
223 1D8T GDP 4.13223
224 3U6K GDP 4.13223
225 3CNL GNP 4.13223
226 5W75 GDP 4.13223
227 1IBR GNP 4.13223
228 1PUJ GNP 4.13223
229 2GDJ ANP 4.13223
230 2BVN GNP 4.13223
231 3DKP ADP 4.13223
232 4PC3 GDP 4.13223
233 3E70 GDP 4.13223
234 3RC3 ANP 4.13223
235 1Q20 A3P 4.13223
236 1Q20 PLO 4.13223
237 1FQK GDP 4.13223
238 1FQJ GDP 4.13223
239 3Q9T FAY 4.13223
240 3VX3 ADP 4.13223
241 1ZRH A3P 4.13223
242 1QF5 RPL 4.13223
243 1QF5 GDP 4.13223
244 2CNT COA 4.13223
245 2KIN ADP 4.20168
246 5OCG GNP 4.2328
247 4GOJ GNP 4.2328
248 2J0V GDP 4.24528
249 1YZN GNP 4.32432
250 2QQ0 ANP 4.34783
251 2QQ0 ADP 4.34783
252 2QQ0 TMP 4.34783
253 2QQ0 THM 4.34783
254 1FZQ GDP 4.41989
255 1DS6 GDP 4.44444
256 2GCO GNP 4.47761
257 2GCN GDP 4.47761
258 6BSX GDP 4.49438
259 6BSX E7S 4.49438
260 1X1R GDP 4.49438
261 4B5P ACO 4.5
262 4ZI2 GNP 4.51128
263 2VVG ADP 4.54545
264 4U00 ADP 4.54545
265 6A20 ADP 4.54545
266 2D2F ADP 4.54545
267 4NE2 SH2 4.54545
268 4NE2 ADP 4.54545
269 1AKY AP5 4.54545
270 5CK5 GDP 4.54545
271 3CX8 GSP 4.54545
272 1SQ5 ADP 4.54545
273 3EWA ANP 4.54545
274 1RJ9 GCP 4.54545
275 2Q2Y MKR 4.54545
276 2Q2Y ADP 4.54545
277 1WF3 GNP 4.54545
278 4TTQ ATP 4.54545
279 1P72 ADP 4.54545
280 5LTJ ADP 4.54545
281 4LPS GDP 4.54545
282 5ZBR ANP 4.54545
283 3AB3 GDP 4.54545
284 3QVV 3QV 4.54545
285 3QVV A3P 4.54545
286 5LTJ BEF 4.54545
287 1ZCB GDP 4.54545
288 2J5V PCA 4.54545
289 2NXW TPP 4.54545
290 4C12 ADP 4.54545
291 4YMU ATP 4.58333
292 1JI0 ATP 4.58333
293 3T5G GDP 4.60526
294 1KSH GDP 4.60526
295 2C5L GTP 4.62428
296 6FA4 GNP 4.62428
297 3KTA AP5 4.62428
298 5TB5 GDP 4.66667
299 5WDR GNP 4.67836
300 5EE5 GTP 4.67836
301 5TAR GDP 4.72973
302 1M7G AV2 4.73934
303 1M7G ADX 4.73934
304 1M7G ADP 4.73934
305 4KVG GTP 4.7619
306 4R2I ANP 4.7619
307 6D5G GNP 4.79042
308 6D5M GNP 4.79042
309 6D5J GNP 4.79042
310 6D5V GNP 4.79042
311 6D59 GNP 4.79042
312 6D5L GNP 4.79042
313 6D5E GNP 4.79042
314 6D56 GNP 4.79042
315 6BVK GNP 4.79042
316 6D55 GNP 4.79042
317 6BVL GNP 4.79042
318 6BVI GNP 4.79042
319 6BVM GNP 4.79042
320 6BVJ GNP 4.79042
321 6D5H GNP 4.79042
322 1GUA GNP 4.79042
323 4HDO GNP 4.79042
324 3X1Z GNP 4.79042
325 3Q72 GNP 4.81928
326 1CLU DBG 4.81928
327 1NVV GNP 4.81928
328 5WLB GNP 4.81928
329 3KUD GDP 4.81928
330 1WQ1 GDP 4.81928
331 1WQ1 AF3 4.81928
332 5IRC GDP 4.83871
333 5UIV ADP 4.84582
334 2RGX AP5 4.85437
335 3LXR GDP 4.86486
336 5HPY GDP 4.86486
337 5DI3 GNP 4.86486
338 6BCB GSP 4.86486
339 1GWN GTP 4.87805
340 1KMQ GNP 4.8913
341 4P3Y GDP 4.94506
342 1KY3 GDP 4.94506
343 1CXZ GSP 4.94506
344 1F9V ADP 4.95868
345 4AG5 ADP 4.95868
346 3VMF GTP 4.95868
347 5W76 GDP 4.95868
348 1WA5 GTP 4.95868
349 2WKQ GTP 4.95868
350 2FAH GDP 4.95868
351 1OW3 GDP 4.95868
352 2Z5F A3P 4.95868
353 1CR1 TTP 4.95868
354 2OBM ADP 4.95868
355 2R0D 4IP 4.95868
356 1D2N ANP 4.95868
357 1YTM ATP 4.95868
358 2R09 4IP 4.95868
359 4IOK XPO 4.95868
360 4IOK ADP 4.95868
361 1H65 GDP 4.95868
362 5TWB FAD 4.95868
363 2RGH FAD 4.95868
364 3R7F CP 4.95868
365 2EW1 GNP 4.97512
366 4XOI GTP 5
367 4XSH GSP 5.02793
368 1NRJ GTP 5.04587
369 6C0B MLI 5.12821
370 2W83 GTP 5.19481
371 1W7J ADP BEF 5.29801
372 6BCA GSP 5.29801
373 4WZ6 ATP 5.3719
374 3NHB ADP 5.3719
375 2CE7 ADP 5.3719
376 1R0X ATP 5.3719
377 1XP8 AGS 5.3719
378 4BFW ZVW 5.3719
379 1G6O ADP 5.3719
380 1Z83 AP5 5.3719
381 1G41 ADP 5.3719
382 5KSZ GCP 5.3719
383 1ZD9 GDP 5.3719
384 2G77 GDP 5.3719
385 3FWY ADP 5.3719
386 2ZJ5 ADP 5.3719
387 1M7B GTP 5.43478
388 6GAS FAD 5.43807
389 1GOT GDP 5.47945
390 1GXU 2HP 5.49451
391 4YJ1 ADP 5.52846
392 1LVG ADP 5.55556
393 4LJ9 ACP 5.60472
394 5XC5 GTP 5.68182
395 2A5F GTP 5.69948
396 4YDS ATP 5.70175
397 4D0G GTP 5.71429
398 4LHW GNP 5.74713
399 3TNF GNP 5.74713
400 3QBT GNP 5.74713
401 5G3Y ADP 5.75221
402 4CVN ADP 5.75916
403 1OIX GDP 5.75916
404 1OIV GDP 5.75916
405 2NGR GDP 5.75916
406 1A4R GNH 5.75916
407 1GRN GDP 5.75916
408 1A4R GDP 5.75916
409 4ITR GDP 5.75916
410 2B99 RDL 5.76923
411 4PPF FLC 5.78512
412 5TSH ADP 5.78512
413 2V7Q ADP 5.78512
414 2V7Q ATP 5.78512
415 2ZR9 DTP 5.78512
416 5TSH ANP 5.78512
417 1X6V ADP 5.78512
418 1LFD GNP 5.78512
419 1S3G AP5 5.78512
420 5G41 AP5 5.78512
421 4LYA ATP 5.78512
422 1W0J ADP 5.78512
423 5M7P ADP 5.78512
424 2CK3 ANP 5.78512
425 6G14 G4P 5.78512
426 1VKJ A3P 5.78512
427 1W0J ADP BEF 5.78512
428 6CS8 F9Y 5.78512
429 2CK3 ADP 5.78512
430 5I0H ADP BEF 5.78512
431 1IHU AF3 5.78512
432 5NM7 GLY 5.78512
433 1IHU ADP 5.78512
434 4D42 NAP 5.78512
435 4D42 W0I 5.78512
436 3PCR GTP 5.78512
437 1Z0K GTP 5.81395
438 3RWO GDP 5.94595
439 4DKX GDP 6.01852
440 4HI0 GDP 6.03015
441 3DOE GTP 6.06061
442 4FCW ADP 6.10932
443 5JCZ GDP 6.14525
444 1SVI GDP 6.15385
445 4U5X GNP 6.17978
446 2GKS ADP 6.19835
447 5HR5 ADP 6.19835
448 1XMV ADP 6.19835
449 4DCT GDP 6.19835
450 3ZFD ANP 6.19835
451 1FNN ADP 6.19835
452 4PX9 ADP 6.19835
453 1ION ADP 6.19835
454 1NHX FTB 6.19835
455 1NHX PEP 6.19835
456 2GWH A3P 6.19835
457 2GMV UN8 6.19835
458 2GMV PEP 6.19835
459 3BFX A3P 6.19835
460 4EIL NDP 6.19835
461 1S8F GDP 6.21469
462 1CS4 GSP 6.22222
463 1HTW ADP 6.32911
464 4C4P GNP 6.35838
465 5SZH GNP 6.40394
466 4KVX ACO 6.41026
467 1ZIN AP5 6.45161
468 3FB4 AP5 6.48148
469 5XKT GNP 6.5
470 5N69 ADP 6.53266
471 1TX4 ALF GDP 6.56566
472 2D7C GTP 6.58683
473 1KAO GDP 6.58683
474 4KFU ACP 6.60377
475 5W7Q GDP 6.61157
476 3GJX GTP 6.61157
477 3TK1 GDP 6.61157
478 1R6B ADP 6.61157
479 3T34 GDP 6.61157
480 5BYK OAQ 6.61157
481 5BYK A3P 6.61157
482 2XAU ADP 6.61157
483 2ZPT A3P 6.61157
484 1WDT GTP 6.61157
485 1NST A3P 6.61157
486 5TVJ COA 6.61157
487 3FVQ ATP 6.61157
488 5TVJ 7LF 6.61157
489 3BD9 A3P 6.61157
490 1JBW ACQ 6.61157
491 1JBW TMF 6.61157
492 3TKL GTP 6.63265
493 1G3Q ADP 6.75105
494 4E03 ADP 6.79612
495 5LEF GTP 6.80628
496 3IUY AMP 7.01754
497 5BN3 ADP 7.02479
498 4LX0 BEF GDP 7.02479
499 5GOE GDP 7.02479
500 4LC1 GDP 7.02479
501 4D0N GDP 7.02479
502 2RCN GDP 7.02479
503 3EZ2 ADP 7.02479
504 2C77 GNP 7.02479
505 2C78 GNP 7.02479
506 3IAE D7K 7.02479
507 4UXH T5A 7.06522
508 1OBV FMN 7.10059
509 1BO4 COA 7.14286
510 1Z2A GDP 7.14286
511 3SFV GDP 7.18232
512 2PL3 ADP 7.20339
513 3IIJ ADP 7.22222
514 5O74 GDP 7.22222
515 2W2X GSP 7.25806
516 2Y8E GNP 7.26257
517 3NKV GNP 7.42857
518 2WHX ADP 7.43802
519 3SBD GNP 7.43802
520 1MH1 GNP 7.43802
521 2FJU GSP 7.43802
522 5IRN ADP 7.43802
523 3BFV ADP 7.43802
524 5K5Z ANP 7.43802
525 4DID GDP 7.43802
526 1RYH GNP 7.43802
527 5Y6N ADP 7.43802
528 4KVA GTP 7.43802
529 1XKV ATP 7.43802
530 1Z6T ADP 7.43802
531 1HE1 GDP 7.43802
532 1G4U GDP 7.43802
533 2JLR ANP 7.43802
534 2JJK R15 7.43802
535 3MGB PAP 7.43802
536 4TMZ GSP 7.43802
537 6FAA ADP 7.43802
538 1YZQ GNP 7.64706
539 3RAB GNP 7.69231
540 1QF9 C5P 7.73196
541 1QF9 ALF 7.73196
542 1QF9 ADP 7.73196
543 4OI4 ATP 7.82609
544 4D81 ADP 7.85124
545 4K81 GTP 7.85124
546 4IHQ ADP 7.85124
547 4XGU ADP 7.85124
548 1NJF ADP 7.85124
549 1T8U A3P 7.85124
550 1T8U UAP SGN IDS SGN 7.85124
551 1NJF AGS 7.85124
552 4A4Z ANP 7.85124
553 2OZE AGS 7.85124
554 2WPX ACO 7.85124
555 2WPW ACO 7.85124
556 5BXQ GDP 7.87402
557 1Z06 GNP 7.93651
558 2WJG GDP 7.97872
559 4V03 ADP 8.17121
560 4QM7 GTP 8.18713
561 1TU3 GNP 8.18713
562 1R2Q GNP 8.23529
563 1JJV ATP 8.25243
564 1VHT BA3 8.25688
565 3LRE ADP 8.26446
566 3H4S ADP 8.26446
567 4J0Q GDP 8.26446
568 4FRZ ADP 8.26446
569 4RZ3 ADP 8.26446
570 3MJH GTP 8.33333
571 5UPK GNP 8.33333
572 2XTN GTP 8.54701
573 4JLS 3ZE 8.55263
574 3COB ADP 8.67769
575 3M1I GTP 8.67769
576 3WYF GTP 8.67769
577 4R43 GDP 8.67769
578 5VHC BEF ADP 8.67769
579 1B7T ADP 8.67769
580 1KK8 BEF ADP 8.67769
581 3ZIA ADP 8.69565
582 3ZIA ATP 8.69565
583 2GJ8 ALF GDP 8.72093
584 2WJH GDP 9.03614
585 2WJH FLC 9.03614
586 1X8J A3P 9.09091
587 1K6M AGS 9.09091
588 2ZPA ADP 9.09091
589 1TQ4 GDP 9.09091
590 2D7D ADP 9.09091
591 4YNU FAD 9.09091
592 4YNU LGC 9.09091
593 2ZPA ACO 9.09091
594 5E95 GDP 9.27835
595 6BC0 GSP 9.33333
596 1L2T ATP 9.3617
597 3CPJ GDP 9.41704
598 3Q85 GNP 9.46746
599 2WMO GTP 9.47368
600 2AWN ADP 9.50413
601 1TAD ALF 9.50413
602 1TAD GDP 9.50413
603 2BIF SIN 9.50413
604 2BIF ANP 9.50413
605 5J1S ATP 9.50413
606 2A2C NG1 9.50413
607 2A2C ADP 9.50413
608 1DR1 NAP 9.52381
609 1DR1 HBI 9.52381
610 4NON GDP 9.61539
611 4CRZ ACO 9.79021
612 5FHD ADP ALF 9.91736
613 5AK0 8V1 9.91736
614 5FTB ANP 9.91736
615 4WEI GLC GAL 9.91736
616 3RLF ANP 9.91736
617 2V2V V12 9.91736
618 4YC7 GNP 9.94475
619 1Z0J GTP 10.1695
620 3TBK ANP 10.3306
621 3DDC GNP 10.4294
622 2C9O ADP 10.7438
623 1NF3 GNP 11.157
624 1ZC3 GNP 11.5044
625 1LVK MNT BEF 11.5702
626 1R4A GNP 11.7647
627 2A9K GDP 11.7647
628 1QHH ATP 11.8343
629 2W58 ADP 11.8812
630 4WZA ACP 11.9835
631 4WZA ADP 11.9835
632 5HGZ ACO 11.9835
633 4KOT CE3 12.3457
634 1OS1 ATP 12.3967
635 1OS1 PYR 12.3967
636 2UZI GTP 12.5
637 1UAD GNP 12.5714
638 1MR3 G3D 12.7072
639 3DEF GDP 12.8099
640 1U8Z GDP 13.0952
641 1M2O GNP 13.1579
642 1OFH ADP 13.6364
643 5E5U MLI 13.6364
644 2GK6 ADP 13.6364
645 5H67 ATP 13.75
646 4OHY ANP 14.4628
647 5HH0 COA 14.5
648 2VB6 ADP BEF 14.7651
649 5L3V GDP 14.876
650 5L3S GNP 14.876
651 5L3S G 14.876
652 5Z2M GTP 15.2174
653 1T5C ADP 15.2893
654 1V8K ANP 15.7025
655 3WYG GTP 15.7895
656 6AIC AMP 15.8879
657 3QF7 ANP 16
658 5BQ5 ADP BEF 16.4021
659 1VG9 GDP 16.9421
660 1VG0 GDP 16.9421
661 1BH2 GSP 17.3554
662 2OM2 GDP 17.3554
663 5KDO GDP 17.3554
664 1GP2 GDP 17.3554
665 6CRK GDP 17.3554
666 1Y3A GDP 17.3554
667 1J99 AND 17.3554
668 2JJQ SAH 17.3554
669 2PWY SAH 17.4419
670 4GBM A3P 17.6471
671 2ODE ALF GDP 17.7686
672 3HU3 AGS 18.1818
673 5IFS ADP 18.1818
674 1UPT GTP 18.3333
675 5XDR ADP 19.0083
676 3FKQ ATP 19.0083
677 5LLB 6YZ 19.0114
678 3BC1 GNP 20.339
679 2QTV GNP 20.4082
680 4HDQ GNP 23.0769
681 5K04 COA 23.5294
682 5LS7 ACO 37.2549
Pocket No.: 2; Query (leader) PDB : 3BOS; Ligand: CDP; Similar sites found with APoc: 49
This union binding pocket(no: 2) in the query (biounit: 3bos.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2J9D AMP None
2 4UP3 FAD 1.23967
3 5T2U NAP 1.65289
4 5AHM IMP 2.06612
5 3GUZ PAF 2.27273
6 4D79 ATP 2.47934
7 4Z0G 5GP 2.47934
8 4X9M FAD 2.47934
9 1Q19 SSC 2.47934
10 3P7N FMN 2.89256
11 3ITJ FAD 3.30579
12 5UAO FAD 3.30579
13 2RAB FAD 3.30579
14 1RYI FAD 3.30579
15 4ZDJ UTP 3.30579
16 2IVD FAD 3.30579
17 1RYI GOA 3.30579
18 1N62 MCN 3.30579
19 1RJW ETF 3.53982
20 5MIT NAP 3.71901
21 5MIT FAD 3.71901
22 5TS5 FAD 3.71901
23 6F7L FAD 3.71901
24 1FHW I5P 3.87597
25 4DE3 DN8 4.13223
26 4TM3 FAD 4.13223
27 4H6U ACO 4.5
28 5K2M ADP 4.54545
29 1REO FAD 4.54545
30 2YG3 FAD 4.54545
31 4USI ATP 4.54545
32 5DF1 58X 4.95868
33 5DF1 NAP 4.95868
34 2ZX2 RAM 5.12821
35 2AQJ TRP 5.3719
36 2AQJ FAD 5.3719
37 3NKS FAD 5.78512
38 3MBC NAP 6.19835
39 4RJK TDL 6.19835
40 3SXN COA 7.02479
41 2UXR ICT 7.02479
42 5AO7 NAG 7.85124
43 3AB1 FAD 8.26446
44 2HW1 ANP 8.26446
45 4XT8 NAP 9.50413
46 2VBQ BSJ 9.69697
47 2GNK ATP 11.6071
48 4IXH IMP 12.3967
49 6GAR FAD 13.6364
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