-->
Receptor
PDB id Resolution Class Description Source Keywords
3BHO 1.8 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FAC WITH AP4A HOMO SAPIENS CPSF5 RNA PROCESSING CLEAVAGE FACTOR DIADENOSINE TETRAPHOMRNA PROCESSING NUCLEUS PHOSPHOPROTEIN RNA-BINDING NUCLPROTEIN
Ref.: CRYSTAL STRUCTURE OF THE 25 KDA SUBUNIT OF HUMAN CL FACTOR IM. NUCLEIC ACIDS RES. V. 36 3474 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
B4P A:800;
Valid;
none;
Kd = 2.44 uM
836.387 C20 H28 N10 O19 P4 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3BHO 1.8 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FAC WITH AP4A HOMO SAPIENS CPSF5 RNA PROCESSING CLEAVAGE FACTOR DIADENOSINE TETRAPHOMRNA PROCESSING NUCLEUS PHOSPHOPROTEIN RNA-BINDING NUCLPROTEIN
Ref.: CRYSTAL STRUCTURE OF THE 25 KDA SUBUNIT OF HUMAN CL FACTOR IM. NUCLEIC ACIDS RES. V. 36 3474 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3BHO Kd = 2.44 uM B4P C20 H28 N10 O19 P4 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3BHO Kd = 2.44 uM B4P C20 H28 N10 O19 P4 c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3BHO Kd = 2.44 uM B4P C20 H28 N10 O19 P4 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: B4P; Similar ligands found: 424
No: Ligand ECFP6 Tc MDL keys Tc
1 AP5 1 1
2 B4P 1 1
3 BA3 0.984615 1
4 AQP 0.942029 0.971831
5 5FA 0.942029 0.971831
6 ATP 0.927536 0.971831
7 HEJ 0.927536 0.971831
8 A2D 0.924242 1
9 ADP 0.884058 0.971831
10 SAP 0.875 0.92
11 AGS 0.875 0.92
12 AT4 0.84507 0.932432
13 AN2 0.84507 0.958333
14 APR 0.835616 0.971831
15 AR6 0.835616 0.971831
16 M33 0.833333 0.958333
17 AD9 0.824324 0.945205
18 ACP 0.821918 0.945205
19 ANP 0.802632 0.945205
20 ACQ 0.802632 0.945205
21 AMP 0.797101 0.943662
22 A 0.797101 0.943662
23 6YZ 0.794872 0.945205
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 50T 0.773333 0.931507
27 ABM 0.763889 0.917808
28 PRX 0.763158 0.893333
29 ATF 0.759494 0.932432
30 T99 0.75641 0.932432
31 TAT 0.75641 0.932432
32 A22 0.753086 0.985915
33 25L 0.752941 0.985915
34 AP2 0.743243 0.932432
35 A12 0.743243 0.932432
36 APC 0.74026 0.932432
37 SRA 0.736111 0.893333
38 A1R 0.73494 0.907895
39 ADQ 0.73494 0.972222
40 A3R 0.73494 0.907895
41 5AL 0.725 0.931507
42 G5P 0.722222 0.921053
43 9X8 0.717647 0.92
44 OAD 0.717647 0.945205
45 AU1 0.714286 0.945205
46 G3A 0.711111 0.921053
47 SRP 0.707317 0.906667
48 8QN 0.702381 0.931507
49 3OD 0.701149 0.945205
50 GTA 0.695652 0.886076
51 4AD 0.694118 0.92
52 UP5 0.691489 0.945946
53 ADV 0.6875 0.932432
54 ADP PO3 0.6875 0.943662
55 RBY 0.6875 0.932432
56 00A 0.686047 0.907895
57 5SV 0.682353 0.848101
58 OOB 0.682353 0.958333
59 25A 0.682353 0.971831
60 BIS 0.681818 0.907895
61 AMO 0.674419 0.932432
62 PAJ 0.674419 0.884615
63 7D4 0.670886 0.88
64 ITT 0.670886 0.916667
65 MAP 0.670588 0.92
66 A4P 0.670103 0.843373
67 DLL 0.666667 0.958333
68 AHX 0.666667 0.896104
69 3UK 0.659091 0.945205
70 SON 0.658228 0.906667
71 T5A 0.656566 0.864198
72 ADP ALF 0.654762 0.87013
73 ALF ADP 0.654762 0.87013
74 LMS 0.653333 0.82716
75 B5V 0.651685 0.932432
76 LAD 0.651685 0.860759
77 PR8 0.651685 0.85
78 WAQ 0.651685 0.883117
79 GAP 0.650602 0.893333
80 AFH 0.648936 0.909091
81 ADP VO4 0.647059 0.931507
82 VO4 ADP 0.647059 0.931507
83 TXA 0.644444 0.932432
84 NB8 0.644444 0.896104
85 PTJ 0.644444 0.871795
86 FYA 0.644444 0.931507
87 1ZZ 0.644444 0.839506
88 ME8 0.644444 0.839506
89 DQV 0.642105 0.985915
90 HFD 0.638554 0.92
91 2A5 0.634146 0.893333
92 DAL AMP 0.632184 0.905405
93 9SN 0.630435 0.896104
94 48N 0.628866 0.896104
95 PAP 0.626506 0.957747
96 ATR 0.626506 0.943662
97 9ZD 0.625 0.883117
98 9ZA 0.625 0.883117
99 YAP 0.623656 0.92
100 B5Y 0.623656 0.92
101 FA5 0.623656 0.932432
102 B5M 0.623656 0.92
103 RAB 0.623188 0.84507
104 ADN 0.623188 0.84507
105 XYA 0.623188 0.84507
106 NXX 0.622449 0.958904
107 NAX 0.622449 0.897436
108 6V0 0.622449 0.921053
109 TXD 0.622449 0.933333
110 NAI 0.622449 0.933333
111 DND 0.622449 0.958904
112 7D3 0.620253 0.88
113 XAH 0.617021 0.839506
114 OMR 0.616162 0.851852
115 TXE 0.616162 0.933333
116 AOC 0.615385 0.821918
117 4UV 0.610526 0.92
118 AP0 0.61 0.921053
119 5N5 0.605634 0.819444
120 5AS 0.604938 0.77907
121 ADP BMA 0.604396 0.945205
122 A2R 0.602273 0.958333
123 CNA 0.601942 0.958904
124 4UU 0.597938 0.92
125 GA7 0.597938 0.932432
126 A4D 0.597222 0.819444
127 5CD 0.597222 0.805556
128 4TC 0.594059 0.921053
129 3AT 0.593023 0.944444
130 139 0.592233 0.897436
131 ADJ 0.592233 0.875
132 LAQ 0.585859 0.839506
133 F2R 0.580952 0.841463
134 A A 0.580645 0.944444
135 YLP 0.58 0.819277
136 COD 0.575472 0.811765
137 DTP 0.574713 0.88
138 JB6 0.574468 0.907895
139 4UW 0.574257 0.884615
140 EP4 0.573333 0.753247
141 A3P 0.573171 0.943662
142 ATP A A A 0.572917 0.957747
143 7D5 0.571429 0.853333
144 TYM 0.568627 0.932432
145 MYR AMP 0.568421 0.817073
146 6AD 0.568182 0.884615
147 DTA 0.565789 0.810811
148 M2T 0.565789 0.734177
149 80F 0.564815 0.864198
150 3DH 0.564103 0.773333
151 G5A 0.563218 0.77907
152 UPA 0.563107 0.933333
153 YLC 0.563107 0.839506
154 YLB 0.563107 0.819277
155 TYR AMP 0.561224 0.894737
156 NAD 0.560748 0.958333
157 TSB 0.56044 0.819277
158 MTA 0.558442 0.773333
159 3AM 0.556962 0.902778
160 SSA 0.555556 0.8
161 AHZ 0.554455 0.817073
162 A2P 0.554217 0.929577
163 NA7 0.553191 0.932432
164 IOT 0.552381 0.809524
165 PPS 0.550562 0.85
166 A3D 0.550459 0.945205
167 7MD 0.55 0.8625
168 AR6 AR6 0.55 0.944444
169 ARG AMP 0.55 0.807229
170 54H 0.549451 0.788235
171 VMS 0.549451 0.788235
172 YLA 0.54717 0.819277
173 AMP DBH 0.545455 0.918919
174 TAD 0.544554 0.884615
175 AV2 0.544444 0.891892
176 A5A 0.544444 0.807229
177 6RE 0.54321 0.7375
178 AYB 0.542056 0.809524
179 7DT 0.54023 0.957747
180 DDS 0.539326 0.853333
181 AVV 0.537634 0.896104
182 52H 0.532609 0.77907
183 BTX 0.53211 0.819277
184 NSS 0.531915 0.8
185 NAE 0.530973 0.92
186 ZAS 0.530864 0.766234
187 J7C 0.53012 0.746835
188 A3N 0.53012 0.786667
189 IMO 0.53012 0.902778
190 DAT 0.528736 0.88
191 BT5 0.527273 0.809524
192 8X1 0.526882 0.752809
193 5CA 0.526882 0.8
194 53H 0.526882 0.77907
195 NVA LMS 0.526316 0.752809
196 ARU 0.526316 0.8375
197 NAQ 0.526316 0.896104
198 EAD 0.525862 0.897436
199 9K8 0.525773 0.733333
200 RGT 0.525253 0.932432
201 2AM 0.525 0.916667
202 S4M 0.52381 0.666667
203 AF3 ADP 3PG 0.52381 0.8375
204 V3L 0.522222 0.944444
205 ZID 0.521739 0.945205
206 LEU LMS 0.520833 0.752809
207 LPA AMP 0.519231 0.817073
208 7MC 0.518868 0.841463
209 DSH 0.518072 0.725
210 MAO 0.517647 0.759036
211 DSZ 0.515789 0.8
212 LSS 0.515789 0.761364
213 P5A 0.515464 0.744444
214 DZD 0.513514 0.909091
215 FB0 0.512397 0.784091
216 5X8 0.511364 0.763158
217 GP3 0.511111 0.921053
218 M24 0.508772 0.873418
219 YLY 0.508772 0.809524
220 N0B 0.508621 0.841463
221 P1H 0.508333 0.875
222 5AD 0.506849 0.746479
223 OVE 0.506024 0.88
224 GJV 0.505882 0.728395
225 7DD 0.505747 0.957747
226 NAJ PZO 0.504425 0.871795
227 GSU 0.5 0.77907
228 KAA 0.5 0.752809
229 128 0.5 0.776471
230 NEC 0.5 0.746667
231 NDE 0.495868 0.932432
232 NJP 0.495495 0.945946
233 6C6 0.494505 0.857143
234 SFG 0.494382 0.75
235 FDA 0.491935 0.833333
236 4TA 0.491071 0.829268
237 AMP NAD 0.491071 0.931507
238 0WD 0.491071 0.921053
239 YSA 0.490196 0.8
240 GTP 0.489362 0.894737
241 A7D 0.488636 0.776316
242 6FA 0.488 0.864198
243 NDC 0.487805 0.896104
244 NAJ PYZ 0.487179 0.829268
245 SA8 0.483516 0.707317
246 A5D 0.483516 0.810811
247 MHZ 0.483146 0.697674
248 71V 0.482759 0.883117
249 A3G 0.482353 0.8
250 ODP 0.482143 0.909091
251 Y3J 0.480519 0.726027
252 8PZ 0.480392 0.821429
253 FAD 0.480315 0.875
254 SFD 0.480315 0.752688
255 FAS 0.480315 0.875
256 7D7 0.48 0.743243
257 GGZ 0.479167 0.825
258 HDV 0.478723 0.868421
259 SAH 0.478261 0.74359
260 SAI 0.478261 0.734177
261 G A A A 0.477876 0.871795
262 NDP 0.477477 0.921053
263 NPW 0.477477 0.886076
264 PO4 PO4 A A A A PO4 0.474747 0.929577
265 SMM 0.473684 0.686047
266 NZQ 0.473214 0.909091
267 TXP 0.473214 0.921053
268 6IA 0.473118 0.814815
269 SAM 0.473118 0.690476
270 AAT 0.468085 0.707317
271 EEM 0.468085 0.690476
272 7C5 0.466667 0.818182
273 PGS 0.466667 0.858974
274 FNK 0.465649 0.804598
275 62F 0.465649 0.886076
276 U A 0.465517 0.907895
277 DA 0.465116 0.853333
278 D5M 0.465116 0.853333
279 A G 0.464912 0.883117
280 N6P 0.464646 0.915493
281 GSP 0.463918 0.85
282 2SA 0.463158 0.906667
283 FAY 0.462121 0.886076
284 A3T 0.461538 0.821918
285 U A G G 0.46087 0.883117
286 A A A 0.46 0.905405
287 AAM 0.45977 0.943662
288 GEK 0.459184 0.7375
289 RFL 0.458647 0.843373
290 6G0 0.458333 0.860759
291 S7M 0.458333 0.690476
292 4YB 0.457944 0.781609
293 C2R 0.457831 0.878378
294 AMZ 0.457831 0.890411
295 GDP 0.457447 0.894737
296 A3S 0.455556 0.810811
297 Z5A 0.454545 0.8
298 WSA 0.454545 0.809524
299 12D 0.453704 0.785714
300 XNP 0.452174 0.873418
301 8Q2 0.45045 0.793103
302 62X 0.45 0.666667
303 AIR 0.45 0.875
304 ETB 0.449153 0.811765
305 DCA 0.449153 0.802326
306 MGP 0.447917 0.860759
307 NIA 0.447059 0.8
308 A6D 0.445545 0.743902
309 K15 0.445545 0.682353
310 PUA 0.445378 0.884615
311 9JJ 0.445255 0.886076
312 6K6 0.444444 0.90411
313 V1N 0.443396 0.944444
314 0T1 0.441667 0.802326
315 COA 0.441667 0.802326
316 649 0.441441 0.764045
317 0UM 0.44 0.698795
318 P5F 0.438849 0.823529
319 GCP 0.438776 0.871795
320 G1R 0.438776 0.883117
321 GNH 0.4375 0.883117
322 3AD 0.4375 0.805556
323 101 0.436782 0.853333
324 NVA 2AD 0.43617 0.759494
325 NAP 0.434426 0.945205
326 9GM 0.434343 0.871795
327 GNP 0.434343 0.871795
328 APU 0.433628 0.894737
329 A U 0.433628 0.894737
330 KB1 0.432692 0.719512
331 F2N 0.432624 0.813953
332 7RP 0.431818 0.901408
333 CAO 0.430894 0.775281
334 TAP 0.430894 0.907895
335 AMX 0.430894 0.811765
336 DG1 0.430894 0.921053
337 COS 0.430894 0.784091
338 30N 0.430894 0.734043
339 1DG 0.430894 0.921053
340 2VA 0.430108 0.8
341 S8M 0.43 0.759494
342 GTG 0.429907 0.886076
343 FA9 0.429577 0.864198
344 MGO 0.428571 0.8375
345 SCO 0.427419 0.802326
346 CMX 0.427419 0.802326
347 NA0 0.427419 0.932432
348 NHD 0.42735 0.931507
349 7RA 0.426966 0.930556
350 AS 0.426966 0.810127
351 QQY 0.425287 0.815789
352 ACK 0.425287 0.861111
353 ACO 0.424 0.775281
354 FAM 0.424 0.784091
355 FCX 0.424 0.775281
356 CC5 0.423077 0.816901
357 SXZ 0.423077 0.710843
358 EO7 0.422222 0.788235
359 8BR 0.422222 0.881579
360 IDP 0.421053 0.893333
361 ZDA 0.421053 0.84
362 HAX 0.420635 0.784091
363 GDC 0.420561 0.884615
364 GKE 0.420561 0.884615
365 GDD 0.420561 0.884615
366 J7V 0.419355 0.833333
367 TM1 0.419048 0.77381
368 2MC 0.418605 0.75
369 CMP 0.417582 0.928571
370 2BA 0.417582 0.942857
371 FYN 0.417323 0.802326
372 3KK 0.417323 0.784091
373 SLU 0.416667 0.790698
374 SO8 0.416667 0.789474
375 7L1 0.416 0.775281
376 NMN AMP PO4 0.415254 0.894737
377 26A 0.414634 0.763158
378 HF7 0.414141 0.868421
379 MCD 0.414062 0.784091
380 SOP 0.414062 0.784091
381 COK 0.414062 0.784091
382 CA6 0.414062 0.71134
383 OXK 0.414062 0.784091
384 QQX 0.413793 0.805195
385 G2R 0.413462 0.860759
386 PRT 0.411215 0.905405
387 FAI 0.411111 0.890411
388 RMB 0.411111 0.847222
389 CO6 0.410853 0.784091
390 1VU 0.410853 0.775281
391 CMC 0.410853 0.784091
392 NMX 0.410853 0.741935
393 SCA 0.409091 0.784091
394 SP1 0.409091 0.866667
395 ANZ 0.409091 0.8
396 1RB 0.409091 0.859155
397 RP1 0.409091 0.866667
398 NFD 0.408333 0.907895
399 SCD 0.407692 0.802326
400 CAJ 0.407692 0.784091
401 D3Y 0.405941 0.813333
402 KH3 0.405405 0.674419
403 A C A C 0.404959 0.871795
404 N01 0.404959 0.931507
405 A1S 0.40458 0.784091
406 3HC 0.40458 0.793103
407 BCO 0.40458 0.784091
408 IVC 0.40458 0.793103
409 MLC 0.40458 0.784091
410 1HE 0.40458 0.766667
411 G 0.404255 0.881579
412 5GP 0.404255 0.881579
413 R5I 0.40404 0.893333
414 R7I 0.40404 0.893333
415 G2Q 0.403846 0.860759
416 3D1 0.402439 0.773333
417 3L1 0.402439 0.773333
418 VRT 0.402062 0.769231
419 COO 0.401515 0.784091
420 MCA 0.401515 0.775281
421 CAA 0.401515 0.793103
422 YE1 0.401515 0.813953
423 3NZ 0.4 0.805195
424 GMV 0.4 0.871795
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3BHO; Ligand: B4P; Similar sites found with APoc: 3
This union binding pocket(no: 1) in the query (biounit: 3bho.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 3LU1 UD2 1.92308
2 2G86 UMP 4.32692
3 1C7O PPG 5.28846
Pocket No.: 2; Query (leader) PDB : 3BHO; Ligand: B4P; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3bho.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback