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Receptor
PDB id Resolution Class Description Source Keywords
3AQ4 1.8 Å NON-ENZYME: OTHER MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE AGROBACTERIUM PROTEIN 6B ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR MIRNA PROCESSING MACHINERIES TOXINRIBOSYLATION
Ref.: MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DI BY AGROBACTERIUM PROTEIN 6B GENES DEV. V. 25 64 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:183;
B:183;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:182;
B:182;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3AQ4 1.8 Å NON-ENZYME: OTHER MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE AGROBACTERIUM PROTEIN 6B ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR MIRNA PROCESSING MACHINERIES TOXINRIBOSYLATION
Ref.: MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DI BY AGROBACTERIUM PROTEIN 6B GENES DEV. V. 25 64 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3AQ4; Ligand: GDP; Similar sites found with APoc: 562
This union binding pocket(no: 1) in the query (biounit: 3aq4.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3Q72 GNP None
2 1UJ2 ADP None
3 1UJ2 C5P None
4 1UKZ ADP None
5 2RGX AP5 None
6 2HF9 GSP None
7 1W4R TTP None
8 2B8T THM None
9 2F3R G5P None
10 2ORV 4TA None
11 4R2I ANP None
12 2VBQ BSJ None
13 1D2E GDP 1.63043
14 1P72 ADP 1.63043
15 3BOS CDP 1.63043
16 4D81 ADP 1.63043
17 1DAK ADP 1.63043
18 1DAK DPU 1.63043
19 4GBM A3P 1.63043
20 5LLB 6YZ 1.63043
21 2D2F ADP 1.63043
22 3QVV 3QV 1.63043
23 3QVV A3P 1.63043
24 1Q20 PLO 1.63043
25 1Q20 A3P 1.63043
26 1QHG ATP 1.63043
27 1D2N ANP 2.17391
28 1X8J A3P 2.17391
29 2GWH A3P 2.17391
30 4KVX ACO 2.5641
31 1TQ4 GDP 2.71739
32 5XKT GNP 2.71739
33 2ZFI ADP 2.71739
34 1FP6 ADP 2.71739
35 4PX9 ADP 2.71739
36 3H86 AP5 2.71739
37 3ZFD ANP 2.71739
38 1H65 GDP 2.71739
39 5H4S RAM 2.71739
40 2CHG ANP 2.71739
41 4UXH T5A 2.71739
42 2O0J ADP 2.71739
43 3IUY AMP 2.71739
44 3ITJ CIT 2.71739
45 3BD9 A3P 2.71739
46 2I4I AMP 2.71739
47 3BER AMP 2.71739
48 1S7N COA 2.74725
49 4U5X GNP 2.80899
50 1DAR GDP 3.26087
51 5U32 GDP 3.26087
52 3BFV ADP 3.26087
53 1XMV ADP 3.26087
54 5EXT ADP 3.26087
55 2BEK ATP 3.26087
56 2GDJ ANP 3.26087
57 4WZ6 ATP 3.26087
58 4FCW ADP 3.26087
59 3DKP ADP 3.26087
60 4LJ9 ACP 3.26087
61 2FAH GDP 3.26087
62 1IN4 ADP 3.26087
63 1RJW ETF 3.26087
64 2VHJ ADP 3.26087
65 2HCJ GDP 3.80435
66 1T5C ADP 3.80435
67 4AG5 ADP 3.80435
68 4NCN GTP 3.80435
69 2DPY ADP 3.80435
70 4GOX A3P 3.80435
71 5Y6N ADP 3.80435
72 2ZPA ADP 3.80435
73 4ZDJ UTP 3.80435
74 1W5T ANP 3.80435
75 1W5T ADP 3.80435
76 2JJK R15 3.80435
77 4TQK NAG 3.80435
78 3CV2 OXL 3.80435
79 1D8T GDP 4.34783
80 1G7S GDP 4.34783
81 2BVN GNP 4.34783
82 3TK1 GDP 4.34783
83 4LPS GDP 4.34783
84 1IWE IMP 4.34783
85 1XP8 AGS 4.34783
86 4ZG4 VO4 ADP 4.34783
87 1XKV ATP 4.34783
88 4TL6 ANP 4.34783
89 4IEE AGS 4.34783
90 2FSH ANP 4.34783
91 5ZB0 ADP 4.34783
92 5ZB0 TYD 4.34783
93 1L2T ATP 4.34783
94 1J99 AND 4.34783
95 3X44 PUS 4.34783
96 3QKT ANP 4.34783
97 1NST A3P 4.34783
98 3FSY SCA 4.34783
99 1KO8 6PG 4.57143
100 3ZQ6 ADP ALF 4.62963
101 2GJ8 ALF GDP 4.65116
102 5YT0 GDP 4.8913
103 4B47 GDP 4.8913
104 2Y65 ADP 4.8913
105 1B0U ATP 4.8913
106 2QEN ADP 4.8913
107 3VX3 ADP 4.8913
108 1G6H ADP 4.8913
109 4TTQ ATP 4.8913
110 4IOK ADP 4.8913
111 4IOK XPO 4.8913
112 1Z6T ADP 4.8913
113 1T8U UAP SGN IDS SGN 4.8913
114 1T8U A3P 4.8913
115 5E5U MLI 4.8913
116 1G3M PCQ 4.8913
117 1G3M A3P 4.8913
118 5MEX SZZ 4.8913
119 2VWT PYR 4.8913
120 5MEX PAP 4.8913
121 1XEX ATP 4.94506
122 3IIJ ADP 5
123 1SKQ GDP 5.43478
124 2XT3 ADP 5.43478
125 3E70 GDP 5.43478
126 1QF5 GDP 5.43478
127 1QF5 RPL 5.43478
128 1OXV ANP 5.43478
129 1G3Q ADP 5.43478
130 2QQ0 THM 5.43478
131 2QQ0 ANP 5.43478
132 2QQ0 TMP 5.43478
133 2QQ0 ADP 5.43478
134 3KJI ADP 5.43478
135 1XX6 ADP 5.43478
136 3QXC ATP 5.43478
137 4HSE ADP 5.43478
138 1JJV ATP 5.43478
139 5I0H ADP BEF 5.43478
140 2IXE ATP 5.43478
141 5NM7 GLY 5.43478
142 1AQU A3P 5.43478
143 3R7F CP 5.43478
144 1GXU 2HP 5.49451
145 1QF9 ALF 5.6701
146 1QF9 ADP 5.6701
147 1QF9 C5P 5.6701
148 1YRB GDP 5.97826
149 1SVI GDP 5.97826
150 2W58 ADP 5.97826
151 3A1S GDP 5.97826
152 3A4M ADP 5.97826
153 4KFU ACP 5.97826
154 1JI0 ATP 5.97826
155 2ZR9 DTP 5.97826
156 3B5J 12D 5.97826
157 5ZXD ATP 5.97826
158 3HU3 AGS 5.97826
159 5UIV ADP 5.97826
160 1S3G AP5 5.97826
161 3FB4 AP5 5.97826
162 1V8K ANP 5.97826
163 6B8B ADP 5.97826
164 4MKF AP5 5.97826
165 4MKG AP5 5.97826
166 2QZ4 ADP 5.97826
167 1E2K TMC 5.97826
168 4PFO ADP 5.97826
169 1SVM ATP 5.97826
170 5N69 ADP 5.97826
171 3FVQ ATP 5.97826
172 1G41 ADP 5.97826
173 1OFH ADP 5.97826
174 4TMK T5A 5.97826
175 1NY5 ADP 5.97826
176 2VB6 ADP BEF 5.97826
177 2JAQ DCP 5.97826
178 2GK6 ADP 5.97826
179 3TBK ANP 5.97826
180 3MGB PAP 5.97826
181 1BZL FAD 5.97826
182 2RCN GDP 6.52174
183 4LC1 GDP 6.52174
184 2WHX ADP 6.52174
185 2YOH WMJ 6.52174
186 3NHB ADP 6.52174
187 2JLR ANP 6.52174
188 1G6O ADP 6.52174
189 1Z83 AP5 6.52174
190 2XAU ADP 6.52174
191 3BFX A3P 6.52174
192 6B4K ANP 6.52174
193 2WOJ ADP ALF 6.52174
194 4PJ3 ANP 6.52174
195 5EP2 AZU 6.52174
196 2B8W ALF 5GP 6.52174
197 1F5N GNP 6.52174
198 5AHM IMP 6.52174
199 1LOJ U 6.89655
200 1KK1 GNP 7.06522
201 5HCN GCP 7.06522
202 2VVG ADP 7.06522
203 1LVG ADP 7.06522
204 5L3V GDP 7.06522
205 1YQT ADP 7.06522
206 4CVN ADP 7.06522
207 1ZIN AP5 7.06522
208 1AKY AP5 7.06522
209 2QG6 NMN 7.06522
210 1SQ5 ADP 7.06522
211 4ZNL BEF ADP 7.06522
212 5I34 GDP 7.06522
213 2IS6 ADP 7.06522
214 1NHX FTB 7.06522
215 1NHX PEP 7.06522
216 2GMV UN8 7.06522
217 2GMV PEP 7.06522
218 2D7D ADP 7.06522
219 2ZPT A3P 7.06522
220 4WZ8 3W7 7.06522
221 1YXM ADE 7.06522
222 3KTA AP5 7.51445
223 2QN6 GDP 7.6087
224 5FG3 GDP 7.6087
225 4P4T GDP 7.6087
226 1BG2 ADP 7.6087
227 3PQC GDP 7.6087
228 2GKS ADP 7.6087
229 4XTR ATP 7.6087
230 4XVU ATP 7.6087
231 4XTR ADP 7.6087
232 4NU0 AP5 7.6087
233 1YTM ATP 7.6087
234 5Z69 AGS 7.6087
235 3DC4 ADP 7.6087
236 6DEF GCP 7.6087
237 2PL3 ADP 7.6087
238 2XTN GTP 7.6087
239 3B7G ANP 7.6087
240 3TMK T5A 7.6087
241 4BQS K2Q 7.95455
242 4BQS ADP 7.95455
243 2C78 GNP 8.15217
244 2WIC GNP 8.15217
245 4R98 GNH 8.15217
246 2AWN ADP 8.15217
247 4RD0 GDP 8.15217
248 2C77 GNP 8.15217
249 3COB ADP 8.15217
250 4H1V GNP 8.15217
251 1WF3 GNP 8.15217
252 4NE2 SH2 8.15217
253 4NE2 ADP 8.15217
254 5X40 ACP 8.15217
255 5GVR LMR 8.15217
256 4YMU ATP 8.15217
257 1ZUI SKM 8.33333
258 3B9Q MLI 8.69565
259 2OG2 MLI 8.69565
260 5L3R GCP 8.69565
261 5BN3 ADP 8.69565
262 4KBF AMP 8.69565
263 2Z5F A3P 8.69565
264 1F2U ATP 8.72483
265 1B7T ADP 8.97436
266 1KK8 BEF ADP 9.09091
267 4U00 ADP 9.23913
268 1ION ADP 9.23913
269 1W7J ADP BEF 9.23913
270 1IHU AF3 9.23913
271 1IHU ADP 9.23913
272 3DZD ADP 9.23913
273 3RC3 ANP 9.23913
274 4HUT ATP 9.23913
275 1MKY GDP 9.78261
276 3WXM GTP 9.78261
277 1GOJ ADP 9.78261
278 1W0J ADP 9.78261
279 4X8O AP5 9.78261
280 1RRC ADP 9.78261
281 1VKJ A3P 9.78261
282 4A4Z ANP 9.78261
283 1W0J ADP BEF 9.78261
284 2HIM ASP 9.78261
285 4QM7 GTP 9.94152
286 1M7G AV2 10.3261
287 2CDN ADP 10.3261
288 4IHQ ADP 10.3261
289 5AK0 8V1 10.3261
290 1CR1 TTP 10.3261
291 1OS1 ATP 10.3261
292 1OS1 PYR 10.3261
293 4IDN GNP 10.3261
294 1F9V ADP 10.3261
295 6C90 ADP 10.3261
296 4QRH 0O2 10.3261
297 1M7G ADP 10.3261
298 1M7G ADX 10.3261
299 5BYK OAQ 10.4247
300 5BYK A3P 10.4247
301 1JG3 ADN 10.6383
302 3MD0 GDP 10.8696
303 5TSH ADP 10.8696
304 5TSH ANP 10.8696
305 2Q2Y ADP 10.8696
306 2Q2Y MKR 10.8696
307 5ZBR ANP 10.8696
308 5L3W GDP 11.413
309 4WZA ACP 11.413
310 4WZA ADP 11.413
311 5L3S GNP 11.413
312 5L3S G 11.413
313 6G14 G4P 11.9565
314 5CK5 GDP 11.9565
315 5KUT GDP 11.9565
316 3ZIA ATP 11.9565
317 3FYH ADP 11.9565
318 4BFW ZVW 11.9565
319 2NCD ADP 11.9565
320 4OI4 ATP 11.9565
321 3ZIA ADP 11.9565
322 4WOP CTP 11.9565
323 1OYY AGS 11.9565
324 2C9O ADP 11.9565
325 5HV7 RBL 11.9565
326 1OE0 TTP 11.9565
327 1PUJ GNP 12.5
328 3FWY ADP 12.5
329 5BQ5 ADP BEF 12.5
330 2PEZ DAT 12.8492
331 2PEZ GGZ 12.8492
332 1G7C 5GP 13.0435
333 1X6V ADP 13.0435
334 4YS0 ADP 13.0435
335 2OFW ADX 13.0435
336 4HI0 GDP 13.587
337 5KSP GDP 13.587
338 4Q1A 2XZ 13.587
339 4Q1A UDP 13.587
340 5KSZ GCP 13.587
341 5M04 GDP 14.1304
342 2ZE7 DST 14.1304
343 2ZE7 AMP 14.1304
344 1RJ9 GCP 14.6739
345 2IYL GDP 14.6739
346 1U0J ADP 14.6739
347 1VHT BA3 14.6739
348 5TIV A3P 14.6739
349 5WRJ A3P 14.6739
350 5WRI A3P 14.6739
351 1NN5 ANP 14.6739
352 1NN5 2DT 14.6739
353 2BIF ANP 15.2174
354 2BIF SIN 15.2174
355 1LVK MNT BEF 15.2174
356 3P4X ADP 15.2174
357 3RLF ANP 15.2174
358 1JJ7 ADP 15.7609
359 5YV5 ADP 15.7609
360 2V7Q ATP 16
361 2CK3 ANP 16
362 3QF7 ANP 16
363 2V7Q ADP 16
364 2CK3 ADP 16
365 2KIN ADP 16.3043
366 5MZN ADP 16.3043
367 2CJW GDP 16.8478
368 1M7B GTP 17.3913
369 1GWN GTP 17.3913
370 4QOS ADP 17.3913
371 2HT6 GDP 17.8161
372 1E96 GTP 17.9348
373 1NF3 GNP 17.9348
374 1I4D GDP 18.4783
375 1DS6 GDP 18.4783
376 1RYH GNP 18.4783
377 5UPK GNP 18.4783
378 4DID GDP 18.4783
379 2NGR GDP 18.4783
380 3H4S ADP 18.4783
381 1A4R GNH 18.4783
382 1A4R GDP 18.4783
383 1GRN GDP 18.4783
384 2W2X GSP 18.4783
385 4ITR GDP 18.4783
386 4FRZ ADP 18.4783
387 1R6B ADP 18.4783
388 4B16 NAG 18.4783
389 2WKQ GTP 19.0217
390 2ZEJ GDP 19.0217
391 1FNN ADP 19.0217
392 2FJU GSP 19.1011
393 1HE1 GDP 19.3182
394 6CS8 F9Y 19.5652
395 5LB3 ADP 20.1087
396 3M1I GTP 20.6522
397 3W5J GDP 20.6522
398 1G4U GDP 20.6522
399 4R43 GDP 20.6522
400 3GJ3 GDP 21.1957
401 3GJ0 GDP 21.1957
402 3GJ7 GDP 21.1957
403 3CH5 GDP 21.1957
404 3GJ4 GDP 21.1957
405 5BXQ GDP 21.1957
406 3GJ8 GDP 21.1957
407 4HAT GNP 21.1957
408 3GJ5 GDP 21.1957
409 1MH1 GNP 21.1957
410 2XTZ GSP 21.1957
411 2F9L GDP 21.1957
412 1IBR GNP 21.1957
413 3DEF GDP 21.1957
414 6AU6 GDP 21.7391
415 1CS4 GSP 21.7391
416 3SBD GNP 21.7391
417 2CE7 ADP 21.7391
418 1K6M AGS 21.7391
419 1WA5 GTP 22.1591
420 2J0V GDP 22.2826
421 4NON GDP 22.2826
422 2D7C GTP 22.7545
423 3RWO GDP 23.3696
424 5HR5 ADP 23.3696
425 3ZS9 ADP ALF 23.6842
426 3EC1 GDP 23.913
427 3CX8 GSP 24.4565
428 3AB3 GDP 24.4565
429 5UWP GNP 25
430 5UWQ GNP 25
431 6CIT GNP 25
432 5UWS GNP 25
433 5DIF GNP 25
434 5UWU GNP 25
435 5DHF GNP 25
436 5UWO GNP 25
437 5UWH GNP 25
438 5UWW GNP 25
439 5UWT GNP 25
440 1Z06 GNP 25
441 2GCO GNP 25
442 5UWI GNP 25
443 5UWR GNP 25
444 5UWJ GNP 25
445 5DI9 GNP 25
446 2GCN GDP 25
447 1GOT GDP 25.5435
448 2G77 GDP 25.5435
449 3REF GDP 25.5435
450 2G77 AF3 25.5435
451 1Z2A GDP 25.5952
452 1TAD GDP 26.087
453 1TAD ALF 26.087
454 1NJF ADP 26.087
455 1NJF AGS 26.087
456 6CRK GDP 27.1739
457 1BH2 GSP 27.1739
458 1Y3A GDP 27.1739
459 2OM2 GDP 27.1739
460 5KDO GDP 27.1739
461 1GP2 GDP 27.1739
462 1FQJ GDP 27.1739
463 1FQK GDP 27.1739
464 2A9K GDP 27.1739
465 2ODE ALF GDP 27.1739
466 2J5V PCA 27.1739
467 2A5J GDP 27.7174
468 1SVK ALF GDP 27.7174
469 3Q85 GNP 27.8107
470 1ZC3 GNP 28
471 4DCT GDP 28.2609
472 1Z0F GDP 28.4916
473 1X1R GDP 28.6517
474 1OIX GDP 28.8043
475 1VG1 GDP 29.3478
476 1VG9 GDP 29.3478
477 1OIV GDP 29.3478
478 1VG0 GDP 29.3478
479 1VG8 GNP 29.3478
480 5UQW GDP 29.6296
481 1U8Z GDP 29.7619
482 3T12 GDP ALF 29.8913
483 3T1O GDP 29.8913
484 1KY3 GDP 30.2198
485 5TB5 GDP 30.2703
486 5TAR GDP 30.2703
487 1S8F GDP 30.5085
488 4HDO GNP 30.5389
489 5Z2M GTP 30.6818
490 1Z0K GTP 30.814
491 5OCG GNP 30.9783
492 1Z0A GDP 31.0345
493 2HV8 GTP 31.3953
494 3T5G GDP 31.4917
495 2C5L GTP 31.7919
496 4C4P GNP 31.7919
497 6FA4 GNP 31.7919
498 6BSX GDP 32.0225
499 6BSX E7S 32.0225
500 1KMQ GNP 32.0652
501 1GUA GNP 32.0988
502 4K81 GTP 32.1637
503 4D0N GDP 32.6087
504 5HPY GDP 32.6087
505 1OW3 GDP 32.6087
506 5IRC GDP 32.6087
507 2BME GNP 32.6087
508 6BVJ GNP 32.9341
509 6D5E GNP 32.9341
510 6D5J GNP 32.9341
511 6BVL GNP 32.9341
512 6BVI GNP 32.9341
513 6BVK GNP 32.9341
514 6D5H GNP 32.9341
515 6D5G GNP 32.9341
516 1LFD GNP 32.9341
517 6D59 GNP 32.9341
518 6D5L GNP 32.9341
519 6D55 GNP 32.9341
520 6D56 GNP 32.9341
521 6BVM GNP 32.9341
522 6D5M GNP 32.9341
523 6D5V GNP 32.9341
524 1CXZ GSP 32.967
525 1CLU DBG 33.1325
526 1WQ1 GDP 33.1325
527 3KUD GDP 33.1325
528 2UZI GTP 33.1325
529 1NVV GNP 33.1325
530 3DDC GNP 33.1325
531 1WQ1 AF3 33.1325
532 5O2T GSP 33.1361
533 2WJG GDP 33.1522
534 2BCG GDP 33.1522
535 1YZN GNP 33.1522
536 1YZQ GNP 33.5294
537 1KAO GDP 33.5329
538 5WLB GNP 33.7349
539 1TX4 ALF GDP 33.8983
540 1TU3 GNP 33.9181
541 3MJH GTP 33.9286
542 1R2Q GNP 34.1176
543 2WJH GDP 34.3373
544 2WJH FLC 34.3373
545 1G16 GDP 34.7059
546 3BC1 GNP 35.3261
547 3UIE ANP 35.8696
548 5XC5 GTP 36.3636
549 2FFQ GSP 36.413
550 1Z0J GTP 36.4706
551 5O74 GDP 36.6667
552 1YVD GNP 36.6864
553 3QBT GNP 36.7816
554 1NRJ GTP 36.9565
555 3RAB GNP 37.8698
556 2FH5 GTP 40.2174
557 1P9B GDP 40.7609
558 1EK0 GNP 41.7647
559 1D5C GDP 41.9753
560 1Z08 GNP 42.9412
561 1M2O GNP 47.8261
562 4M9Q GNP 49.4565
563 1F6B GDP 50
Pocket No.: 2; Query (leader) PDB : 3AQ4; Ligand: GDP; Similar sites found with APoc: 2
This union binding pocket(no: 2) in the query (biounit: 3aq4.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 2ZJ5 ADP 4.8913
2 3WQT ANP 14.1304
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