Receptor
PDB id Resolution Class Description Source Keywords
3AGC 2 Å EC: 1.3.1.80 F218V MUTANT OF THE SUBSTRATE-BOUND RED CHLOROPHYLL CATABOLI REDUCTASE FROM ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CHLOROPHYLL DEGRADATION SUBSTRATE-BOUND ENZYME CHLOROPHYLLCATABOLISM CHLOROPLAST NADP OXIDOREDUCTASE TRANSIT PEPT
Ref.: CRYSTAL STRUCTURES OF THE SUBSTRATE-BOUND FORMS OF CHLOROPHYLL CATABOLITE REDUCTASE: IMPLICATIONS FOR SITE-SPECIFIC AND STEREOSPECIFIC REACTION J.MOL.BIOL. V. 402 879 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NA A:1;
B:2;
Part of Protein;
Part of Protein;
none;
none;
submit data
22.99 Na [Na+]
RCC A:1000;
Valid;
none;
submit data
626.699 C35 H38 N4 O7 CCc1c...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3AGC 2 Å EC: 1.3.1.80 F218V MUTANT OF THE SUBSTRATE-BOUND RED CHLOROPHYLL CATABOLI REDUCTASE FROM ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CHLOROPHYLL DEGRADATION SUBSTRATE-BOUND ENZYME CHLOROPHYLLCATABOLISM CHLOROPLAST NADP OXIDOREDUCTASE TRANSIT PEPT
Ref.: CRYSTAL STRUCTURES OF THE SUBSTRATE-BOUND FORMS OF CHLOROPHYLL CATABOLITE REDUCTASE: IMPLICATIONS FOR SITE-SPECIFIC AND STEREOSPECIFIC REACTION J.MOL.BIOL. V. 402 879 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3AGC - RCC C35 H38 N4 O7 CCc1c(c([n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3AGC - RCC C35 H38 N4 O7 CCc1c(c([n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3AGC - RCC C35 H38 N4 O7 CCc1c(c([n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RCC; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 RCC 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3AGC; Ligand: RCC; Similar sites found: 91
This union binding pocket(no: 1) in the query (biounit: 3agc.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2QO4 CHD 0.0007998 0.41914 None
2 4GGZ BTN 0.0178 0.41059 None
3 1YRX FMN 0.01755 0.40009 None
4 3RGA LSB 0.005288 0.42444 0.724638
5 2OVW CBI 0.01182 0.42836 1.44928
6 4J6C STR 0.02476 0.40723 1.81159
7 1ULE GLA GAL NAG 0.0009556 0.4889 2
8 4MOB ADP 0.02309 0.41559 2.10843
9 4L4J NAG NAG BMA MAN NAG 0.02754 0.40177 2.17391
10 1OGZ EQU 0.01053 0.41796 2.4
11 4U0W 16G 0.00202 0.43975 2.43902
12 1ZM1 BGC BGC BGC 0.003306 0.43394 2.48963
13 1OJJ GLC GAL 0.02086 0.41108 2.53623
14 3WDX BGC BGC GLC 0.009004 0.40361 2.53623
15 5T7I LAT NAG GAL 0.00603 0.44432 2.58065
16 4P8K 38C 0.01071 0.40676 2.89855
17 3UXM 0DN 0.03338 0.40447 2.89855
18 1A78 TDG 0.007457 0.4422 2.98507
19 3CBC DBS 0.04127 0.40807 3.0303
20 3ACL 3F1 0.00318 0.43473 3.26087
21 3I7V ATP 0.01061 0.43108 3.26087
22 4QDC ASD 0.01336 0.40564 3.26087
23 5D48 L96 0.002418 0.4123 3.28947
24 2Q4X HMH 0.0375 0.40347 3.61991
25 4S00 AKR 0.01492 0.41867 3.62319
26 5M77 7K2 7K3 0.01958 0.40475 3.62319
27 4JH6 FCN 0.02774 0.40468 3.62319
28 1Y9Q MED 0.0339 0.40063 3.64583
29 3B00 16A 0.008399 0.42694 3.67647
30 4IAW LIZ 0.01794 0.41041 3.7234
31 4BQY FNT 0.006013 0.41129 3.96825
32 4WVW SLT 0.003316 0.45878 3.98551
33 4QA8 PJZ 0.003013 0.41449 3.98551
34 4NPL AKG 0.02006 0.41682 4
35 2HZQ STR 0.008372 0.43846 4.02299
36 2VFT SOR 0.007792 0.42857 4.34783
37 1N5S ADL 0.002885 0.43671 4.46429
38 4MPO AMP 0.03178 0.40591 4.57516
39 1P0Z FLC 0.005989 0.4465 4.58015
40 2QL9 CIT 0.01057 0.43093 4.62428
41 4QCK ASD 0.002881 0.44096 4.71014
42 4D1J DGJ 0.03744 0.40359 4.71014
43 3KFF XBT 0.005295 0.44671 4.93827
44 3KFF ZBT 0.005295 0.44671 4.93827
45 3VV1 GAL FUC 0.01195 0.4305 5
46 3SAO NKN 0.01564 0.41341 5
47 1Y2F WAI 0.007219 0.44277 5.03597
48 4R08 UCG 0.01068 0.40674 5.07246
49 3QRC SCR 0.00002365 0.56606 5.09554
50 5L9V OGA 0.003464 0.44616 5.15873
51 5MOB A8S 0.02009 0.40794 5.17241
52 4JN6 OXL 0.01221 0.42039 5.43478
53 2YMZ LAT 0.01034 0.41808 5.43478
54 3AJH BL3 0.005757 0.41548 5.43478
55 3QUG GIX 0.005775 0.43974 5.55556
56 5LUN OGA 0.009918 0.43237 5.7971
57 1SDW IYT 0.01986 0.40444 5.7971
58 4OCT AKG 0.02639 0.40196 5.85586
59 4B1M FRU FRU 0.02753 0.40957 5.94595
60 3HAV ATP 0.03551 0.40465 6.15942
61 1I7A PHE 0.004076 0.40418 6.30631
62 1NVM OXL 0.01795 0.41939 6.52174
63 4H6B 10Y 0.02236 0.4056 6.66667
64 2P7Q GG6 0.0137 0.42497 6.76692
65 4WOE ADP 0.003293 0.46126 6.88406
66 3T7V MD0 0.008757 0.43521 6.88406
67 3ZW2 NAG GAL FUC 0.02378 0.40425 6.89655
68 2JIG PD2 0.001442 0.47057 7.14286
69 1SLT NDG GAL 0.01702 0.42463 7.24638
70 3KJM 245 0.01306 0.41337 7.24638
71 5KEW 6SB 0.02603 0.40611 7.44681
72 1W6P NDG GAL 0.00765 0.43507 7.46269
73 1GZW GAL BGC 0.008434 0.43398 7.46269
74 3OYW TDG 0.01793 0.4188 7.46269
75 2D6M LBT 0.01296 0.42378 7.54717
76 3GM5 CIT 0.03275 0.40644 7.54717
77 5U98 1KX 0.01091 0.41083 8.08081
78 2ZHL NAG GAL GAL NAG 0.002427 0.44904 8.10811
79 5L2J 70E 0.01134 0.41469 8.16327
80 5L2J 6UL 0.01618 0.40667 8.16327
81 1H4H XYP XYS XYP 0.004026 0.42996 8.61244
82 5E89 TD2 0.001379 0.45163 8.63309
83 2J1E NDG GAL 0.02579 0.41417 8.66667
84 4OPC FDA 0.03166 0.40755 8.69565
85 2WA4 069 0.01174 0.41564 9.78261
86 2AGC DAO 0.02851 0.40406 9.87654
87 4ZU4 4TG 0.002971 0.43611 10.1351
88 4EE7 PIS 0.005721 0.42793 10.1449
89 4MNS 2AX 0.005379 0.41695 13.2075
90 5DG2 GAL GLC 0.008083 0.42394 15.5556
91 1C1L GAL BGC 0.03363 0.4061 18.9781
Feedback