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Receptor
PDB id Resolution Class Description Source Keywords
3AB3 2.4 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF P115RHOGEF RGS DOMAIN IN COMPLEX WITH G MUS MUSCULUS SIGNAL TRANSDUCTION PROTEIN COMPLEX GTP-BINDING MEMBRANETRANSDUCER LIPOPROTEIN NUCLEOTIDE-BINDING PALMITATE PHOSPHOPROTEIN GTPASE ACTIVATION GUANINE-NUCLEOTIDE RELEAFACTOR SIGNALING PROTEIN-MEMBRANE PROTEIN COMPLEX
Ref.: IDENTIFICATION OF CRITICAL RESIDUES IN G(ALPHA)13 F STIMULATION OF P115RHOGEF ACTIVITY AND THE STRUCTUR G(ALPHA)13-P115RHOGEF REGULATOR OF G PROTEIN SIGNAL HOMOLOGY (RH) DOMAIN COMPLEX. J.BIOL.CHEM. V. 286 20625 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALF A:601;
C:602;
Invalid;
Invalid;
none;
none;
submit data
102.975 Al F4 F[Al-...
GDP A:401;
C:402;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:501;
C:502;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3AB3 2.4 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF P115RHOGEF RGS DOMAIN IN COMPLEX WITH G MUS MUSCULUS SIGNAL TRANSDUCTION PROTEIN COMPLEX GTP-BINDING MEMBRANETRANSDUCER LIPOPROTEIN NUCLEOTIDE-BINDING PALMITATE PHOSPHOPROTEIN GTPASE ACTIVATION GUANINE-NUCLEOTIDE RELEAFACTOR SIGNALING PROTEIN-MEMBRANE PROTEIN COMPLEX
Ref.: IDENTIFICATION OF CRITICAL RESIDUES IN G(ALPHA)13 F STIMULATION OF P115RHOGEF ACTIVITY AND THE STRUCTUR G(ALPHA)13-P115RHOGEF REGULATOR OF G PROTEIN SIGNAL HOMOLOGY (RH) DOMAIN COMPLEX. J.BIOL.CHEM. V. 286 20625 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 3AB3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 3AB3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 3AB3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3AB3; Ligand: GDP; Similar sites found with APoc: 641
This union binding pocket(no: 1) in the query (biounit: 3ab3.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 1TUK PGM None
2 1VHT BA3 2.29358
3 5D9G GLU ASN LEU TYR PHE GLN 2.43902
4 3BJE URA 2.43902
5 3DC4 ADP 2.61628
6 5AHO TLA 2.67857
7 2BEK ATP 2.72374
8 4YMU ATP 2.72727
9 4YMU ARG 2.72727
10 3FWY ADP 2.84553
11 4TL6 ANP 2.84553
12 2O0J ADP 2.84553
13 2Z3Y F2N 2.84553
14 3DKP ADP 2.85714
15 1Z83 AP5 3.06122
16 3FVQ ATP 3.06407
17 4WOP CTP 3.11111
18 1DAK DPU 3.125
19 1DAK ADP 3.125
20 1VKJ A3P 3.15789
21 3VX3 ADP 3.22581
22 1KK1 GNP 3.25203
23 4AG5 ADP 3.25203
24 4XGU ADP 3.25203
25 2IYL GDP 3.25203
26 5I34 GDP 3.25203
27 1F5N GNP 3.25203
28 1LVK MNT BEF 3.25203
29 2VVG ADP 3.25203
30 1RJ9 GCP 3.28947
31 4B47 GDP 3.31492
32 4YJ1 ADP 3.31492
33 2JLR ANP 3.31492
34 3BRE C2E 3.35196
35 2CBZ ATP 3.37553
36 2XZ9 PYR 3.39506
37 1GWN GTP 3.41463
38 3ZFD ANP 3.4188
39 2W58 ADP 3.46535
40 5XKT GNP 3.5
41 4IOK ADP 3.59116
42 4IOK XPO 3.59116
43 1OYY AGS 3.59116
44 3TK1 GDP 3.63636
45 1WF3 GNP 3.65854
46 3MD0 GDP 3.65854
47 2XT3 ADP 3.65854
48 4TMZ GSP 3.65854
49 4NCN GTP 3.65854
50 5TSH ANP 3.65854
51 5TSH ADP 3.65854
52 4LYA ATP 3.65854
53 1OS1 ATP 3.65854
54 1OS1 PYR 3.65854
55 2FAH GDP 3.65854
56 1JJ7 ADP 3.65854
57 1V25 ANP 3.65854
58 2VWT PYR 3.65854
59 1T5C ADP 3.72493
60 2WIC GNP 3.74532
61 5WRI A3P 3.75
62 4DDY DN6 3.80228
63 1M7B GTP 3.80435
64 5J1J ANP 3.85965
65 1WDT GTP 3.8674
66 1R6B ADP 3.8674
67 5WRJ A3P 3.9604
68 1RRC ADP 3.98671
69 1OFH ADP 4.02299
70 3EWA ANP 4.03727
71 5I0H ADP BEF 4.06504
72 2FSH ANP 4.06504
73 4ZDJ UTP 4.06504
74 2CDC XYS 4.06504
75 1G3M PCQ 4.06504
76 1G3M A3P 4.06504
77 4ZG4 VO4 ADP 4.14365
78 1NHX FTB 4.14365
79 1NHX PEP 4.14365
80 2GMV UN8 4.14365
81 4NU0 AP5 4.14747
82 4GOX A3P 4.15335
83 3LRE ADP 4.22535
84 4NON GDP 4.23077
85 5EXT ADP 4.23077
86 2PL3 ADP 4.23729
87 2ORV 4TA 4.2735
88 1G6H ADP 4.28016
89 4HSE ADP 4.28212
90 1AQU A3P 4.3771
91 5G3Y ADP 4.42478
92 4R98 GNH 4.42804
93 4RD0 GDP 4.47154
94 2D2F ADP 4.47154
95 4V03 ADP 4.47154
96 2DPY ADP 4.47154
97 5VGR GDP 4.47154
98 4QOS ADP 4.47154
99 1P72 ADP 4.47154
100 4PX9 ADP 4.47154
101 1ION ADP 4.52675
102 3BOS CDP 4.54545
103 5ZB0 ADP 4.54545
104 5ZB0 TYD 4.54545
105 4D81 ADP 4.59364
106 4MKG AP5 4.60829
107 4MKF AP5 4.60829
108 1S3G AP5 4.60829
109 3Q9L ATP 4.61538
110 3EZ2 ADP 4.69613
111 4IHQ ADP 4.69613
112 5KSP GDP 4.73684
113 5TIV A3P 4.74308
114 1ZUI SKM 4.7619
115 1NJF AGS 4.8
116 1NJF ADP 4.8
117 4FCW ADP 4.82315
118 2HF9 GSP 4.86726
119 5H7K GDP 4.87805
120 1DAR GDP 4.87805
121 1IHU AF3 4.87805
122 1IHU ADP 4.87805
123 3TBK ANP 4.87805
124 2BIF ANP 4.87805
125 2BIF SIN 4.87805
126 2X7I CIT 4.87805
127 5E5U MLI 4.87805
128 5XDR ADP 4.87805
129 3ITJ CIT 4.87805
130 1B0U ATP 4.96183
131 5KSZ GCP 4.97238
132 1XKV ATP 4.97238
133 2D7D ADP 4.97238
134 1DKU AP2 5.04732
135 1W4R TTP 5.12821
136 6FHQ DE5 5.17241
137 4UTG ANP 5.20231
138 1U0J ADP 5.24345
139 2B8W ALF 5GP 5.24862
140 5Y6N ADP 5.24862
141 3CNL GNP 5.28455
142 1G6O ADP 5.28455
143 1FP6 ADP 5.28455
144 4WZA ACP 5.28455
145 4WZA ADP 5.28455
146 1X6V ADP 5.28455
147 4NE2 SH2 5.28455
148 4NE2 ADP 5.28455
149 4KBF AMP 5.28455
150 5HR5 ADP 5.28455
151 3GDN FAD 5.28455
152 3GDN HBX 5.28455
153 5ZBR ANP 5.33333
154 2BCG GDP 5.33981
155 4E03 ADP 5.33981
156 2RGX AP5 5.33981
157 3B5J 12D 5.34979
158 5M7P ADP 5.52486
159 2IS6 ADP 5.52486
160 1LVG ADP 5.55556
161 1UJ2 C5P 5.55556
162 1UJ2 ADP 5.55556
163 2OG2 MLI 5.57103
164 2Y8E GNP 5.58659
165 4X8O AP5 5.60748
166 1OXV ANP 5.66572
167 6G14 G4P 5.69106
168 5FG3 GDP 5.69106
169 3COB ADP 5.69106
170 2WOJ ADP ALF 5.69106
171 2FNA ADP 5.69106
172 1QF9 C5P 5.69106
173 1QF9 ADP 5.69106
174 1QF9 ALF 5.69106
175 1NY5 ADP 5.69106
176 2ZJ5 ADP 5.69106
177 4Q1A 2XZ 5.71429
178 4Q1A UDP 5.71429
179 5UIV ADP 5.72687
180 1OIX GDP 5.75916
181 1OIV GDP 5.75916
182 1BG2 ADP 5.84615
183 1RYH GNP 5.91133
184 3FB4 AP5 6.01852
185 6GAS FAD 6.0423
186 5K5Z ANP 6.05096
187 3T1O GDP 6.06061
188 1SVM ATP 6.07735
189 3FKQ ATP 6.07735
190 1W5T ANP 6.07735
191 4R43 GDP 6.07735
192 1W5T ADP 6.07735
193 3EC1 GDP 6.09756
194 1G7S GDP 6.09756
195 5M04 GDP 6.09756
196 3SFV GDP 6.09756
197 2Y65 ADP 6.09756
198 2WHX ADP 6.09756
199 5LB3 ADP 6.09756
200 5G41 AP5 6.09756
201 1FNN ADP 6.09756
202 2IXE ATP 6.09756
203 5X40 ACP 6.09756
204 4CFT H4B 6.09756
205 1T8U A3P 6.09756
206 2ZPT A3P 6.1017
207 2PZE ATP 6.11354
208 4KFU ACP 6.13208
209 3BC1 GNP 6.15385
210 5MVR ADP 6.17284
211 1X1R GDP 6.17978
212 3A1S GDP 6.20155
213 4ZNL BEF ADP 6.20438
214 1E96 GTP 6.25
215 3KJI ADP 6.29921
216 4JLV ADP 6.3197
217 5W75 GDP 6.35359
218 5GOE GDP 6.35359
219 5FTB ANP 6.35359
220 5FHD ADP ALF 6.35359
221 2ZTS ADP 6.35359
222 2WJG GDP 6.38298
223 2HV8 GTP 6.39535
224 2XTN GTP 6.41026
225 3SBD GNP 6.41711
226 1MH1 GNP 6.45161
227 1G16 GDP 6.47059
228 1YZN GNP 6.48649
229 4KVA GTP 6.50407
230 2OBM ADP 6.50407
231 5VHC BEF ADP 6.50407
232 3NRR D16 6.50407
233 1G4U GDP 6.52174
234 2QQ0 TMP 6.52174
235 2QQ0 ADP 6.52174
236 2QQ0 ANP 6.52174
237 2QQ0 THM 6.52174
238 3T12 GDP ALF 6.61765
239 3B9Q MLI 6.62252
240 3Q72 GNP 6.62651
241 3P4X ADP 6.62983
242 5M8T 0TR 6.62983
243 2CHG ANP 6.63717
244 2FJU GSP 6.74157
245 1DS6 GDP 6.77083
246 1JJV ATP 6.79612
247 1HE1 GDP 6.81818
248 3U6B GDP 6.85279
249 5JBQ GDP 6.85279
250 4G5G GDP 6.85279
251 3U6K GDP 6.85279
252 1KO8 6PG 6.85714
253 3W5J GDP 6.86275
254 2BVN GNP 6.87023
255 1D8T GDP 6.87023
256 5MZN ADP 6.90608
257 2QEN ADP 6.91057
258 6CS8 F9Y 6.91057
259 6B8B ADP 6.91057
260 6FAA ADP 6.91057
261 4XTR ATP 6.91244
262 4XTR ADP 6.91244
263 4XVU ATP 6.91244
264 4U00 ADP 6.96721
265 1XEX ATP 6.97674
266 3QXC ATP 7.02479
267 2FH5 GTP 7.02703
268 2F9L GDP 7.03518
269 1Z08 GNP 7.05882
270 2ZEJ GDP 7.06522
271 5O74 GDP 7.1066
272 5J1S ATP 7.11297
273 1Z2A GDP 7.14286
274 2D7C GTP 7.18563
275 2WJH GDP 7.22892
276 2WJH FLC 7.22892
277 2PEZ GGZ 7.26257
278 2PEZ DAT 7.26257
279 4J0Q GDP 7.31707
280 5H7J GCP 7.31707
281 3IO3 ADP 7.31707
282 4IDN GNP 7.31707
283 5H68 AGS 7.31707
284 2YOH WMJ 7.31707
285 2ZPA ADP 7.31707
286 1XX6 ADP 7.32984
287 1ZIN AP5 7.37327
288 5XC5 GTP 7.38636
289 4BQS ADP 7.38636
290 4BQS K2Q 7.38636
291 3NKV GNP 7.42857
292 4LPS GDP 7.43802
293 1F76 ORO 7.44048
294 3IUY AMP 7.45614
295 5IFS ADP 7.45856
296 3HU3 AGS 7.45856
297 1JI0 ATP 7.5
298 5N69 ADP 7.53769
299 1G3Q ADP 7.59494
300 3GJ4 GDP 7.69231
301 3GJ5 GDP 7.69231
302 3GJ8 GDP 7.69231
303 3GJ0 GDP 7.69231
304 5L3V GDP 7.69231
305 2OFW ADX 7.69231
306 2C77 GNP 7.72358
307 2C78 GNP 7.72358
308 5YT0 GDP 7.72358
309 3ZQ6 ADP ALF 7.72358
310 1Y63 ADP 7.72358
311 5L3R GCP 7.72358
312 1Z6T ADP 7.72358
313 1IN4 ADP 7.72358
314 1SQ5 ADP 7.72358
315 2GK6 ADP 7.72358
316 4A4Z ANP 7.72358
317 1F9V ADP 7.72358
318 1V8K ANP 7.73481
319 3WYF GTP 7.76256
320 4CVN ADP 7.8534
321 1IBR GNP 7.87037
322 5BXQ GDP 7.87402
323 1NN5 ANP 7.90698
324 1NN5 2DT 7.90698
325 3E70 GDP 7.92683
326 2GNK ATP 8.03571
327 2HCJ GDP 8.0597
328 4H1V GNP 8.13008
329 1AKY AP5 8.13008
330 4RZ3 ADP 8.13008
331 2Q2Y ADP 8.13008
332 2Q2Y MKR 8.13008
333 2NCD ADP 8.13008
334 6A20 ADP 8.13008
335 5TWB FAD 8.13953
336 4PC3 GDP 8.15603
337 2ZFI ADP 8.19672
338 1HTW ADP 8.22785
339 4IEE AGS 8.28729
340 3T34 GDP 8.33333
341 1BO4 COA 8.33333
342 3H86 AP5 8.33333
343 2KIN ADP 8.40336
344 3BER AMP 8.43373
345 1S8F GDP 8.47458
346 2GKS ADP 8.53659
347 2OZE AGS 8.53659
348 1E2K TMC 8.53659
349 3MGB PAP 8.53659
350 2GWH A3P 8.53659
351 4LJ9 ACP 8.55457
352 5JCP GDP ALF 8.56354
353 4P3Y GDP 8.79121
354 1GXU 2HP 8.79121
355 3MKN DNB 8.86076
356 5U32 GDP 8.8983
357 5URY PAM 8.90411
358 4TMK T5A 8.92019
359 4LC1 GDP 8.94309
360 4LX0 BEF GDP 8.94309
361 3CPJ GDP 8.96861
362 1KAO GDP 8.98204
363 5KUT GDP 8.99471
364 2QG6 NMN 9.04523
365 4R2I ANP 9.11602
366 3DEF GDP 9.16031
367 2ZR9 DTP 9.16905
368 1H65 GDP 9.25926
369 3WYG GTP 9.34066
370 3KTA AP5 9.34066
371 2CK3 ANP 9.34959
372 1W0J ADP 9.34959
373 5BN3 ADP 9.34959
374 6B4K ANP 9.34959
375 1W0J ADP BEF 9.34959
376 2CK3 ADP 9.34959
377 1TU3 GNP 9.35672
378 4WEI GLC GAL 9.38628
379 4PFO ADP 9.39227
380 1R2Q GNP 9.41177
381 2NGR GDP 9.42408
382 1A4R GNH 9.42408
383 1A4R GDP 9.42408
384 1YVD GNP 9.46746
385 2WMO GTP 9.47368
386 3MJH GTP 9.52381
387 1GOJ ADP 9.57747
388 2WKQ GTP 9.63855
389 1WA5 GTP 9.65909
390 3DZD ADP 9.66851
391 2W2X GSP 9.67742
392 3TMK T5A 9.72222
393 4GDX GLU 9.74359
394 1D2E GDP 9.7561
395 6DEF GCP 9.7561
396 1YTM ATP 9.7561
397 3RC3 ANP 9.7561
398 5AK0 8V1 9.7561
399 3QKT ANP 9.7561
400 3QVV 3QV 9.7561
401 3QVV A3P 9.7561
402 3REF GDP 9.79381
403 1D5C GDP 9.87654
404 4YC7 GNP 9.94475
405 3M1I GTP 9.94764
406 3IIJ ADP 10
407 4ITR GDP 10.1266
408 1CR1 TTP 10.1351
409 6H5E ANP 10.1626
410 3FYH ADP 10.2484
411 1I4D GDP 10.2679
412 3QBT GNP 10.3448
413 1GRN GDP 10.3448
414 4LHW GNP 10.3448
415 3TNF GNP 10.3448
416 2G77 GDP 10.4972
417 2G77 AF3 10.4972
418 5WDR GNP 10.5263
419 4YDS ATP 10.5263
420 1G41 ADP 10.5691
421 5GVR LMR 10.6838
422 4TTQ ATP 10.6977
423 5HCN GCP 10.728
424 4ZKD GDP 10.7735
425 5IRN ADP 10.7735
426 3RLF ANP 10.7735
427 2AWN ADP 10.7735
428 4UXH T5A 10.8696
429 1YQT ADP 10.9756
430 5YV5 ADP 10.9756
431 4DID GDP 11.1842
432 6BSX GDP 11.236
433 6BSX E7S 11.236
434 1SVI GDP 11.2821
435 2C9O ADP 11.326
436 2XAU ADP 11.326
437 5IRR GSP 11.3636
438 5Z69 AGS 11.3821
439 3CH5 GDP 11.5385
440 2EFE GNH 11.6022
441 1Z06 GNP 11.6402
442 1G7C 5GP 11.7021
443 3B7G ANP 11.7391
444 5CK5 GDP 11.7886
445 4C4P GNP 11.7886
446 3A4M ADP 11.7886
447 2J5V PCA 11.7886
448 1X8J A3P 11.7886
449 3E5H GNP 11.7978
450 1W7J ADP BEF 11.9205
451 3WYA GDP 11.9816
452 4HI0 GDP 12.1951
453 5WC2 ADP 12.1951
454 3BFX A3P 12.1951
455 3GJ7 GDP 12.2449
456 1M7G AV2 12.3223
457 1M7G ADX 12.3223
458 1M7G ADP 12.3223
459 5L3W GDP 12.4183
460 2EW1 GNP 12.4378
461 5W76 GDP 12.4675
462 2GDJ ANP 12.5
463 4JLS 3ZE 12.5
464 5JCZ GDP 12.6016
465 2Z5F A3P 12.6016
466 1L2T ATP 12.766
467 5L3S GNP 12.8378
468 2QN6 GDP 12.9032
469 3UIE ANP 13
470 2CE7 ADP 13.0081
471 1K6M AGS 13.0081
472 4PPF FLC 13.1429
473 5UWP GNP 13.2867
474 5UWQ GNP 13.2867
475 5DIF GNP 13.2867
476 6CIT GNP 13.2867
477 5UWU GNP 13.2867
478 5UWW GNP 13.2867
479 5UWI GNP 13.2867
480 5UWR GNP 13.2867
481 5DHF GNP 13.2867
482 5UWH GNP 13.2867
483 5UWT GNP 13.2867
484 5UWS GNP 13.2867
485 5UWO GNP 13.2867
486 5UWJ GNP 13.2867
487 5DI9 GNP 13.2867
488 1NRJ GTP 13.2911
489 1UKZ ADP 13.3005
490 1PUJ GNP 13.4752
491 4HAT GNP 13.5714
492 5W7Q GDP 13.6729
493 5OCG GNP 13.7566
494 5UQW GDP 13.7566
495 3TKL GTP 13.8211
496 3GJX GTP 13.8211
497 2CDN ADP 13.9303
498 5H67 ATP 14.0704
499 4OI4 ATP 14.0884
500 2VB6 ADP BEF 14.094
501 1SKQ GDP 14.3646
502 5UPK GNP 14.5833
503 5TB5 GDP 14.5946
504 5TAR GDP 14.5946
505 4QM7 GTP 14.6199
506 1IWE IMP 14.6341
507 2QZ4 ADP 14.6341
508 5LEF GTP 14.6597
509 1D2N ANP 14.7059
510 4WZ6 ATP 14.8276
511 1VG0 GDP 14.9758
512 1VG8 GNP 14.9758
513 2C5L GTP 15.0289
514 4YS0 ADP 15.0407
515 4NOS H2B 15.0407
516 1XPJ TLA 15.0794
517 4K81 GTP 15.2047
518 5O2T GSP 15.3846
519 3BFV ADP 15.4472
520 3VMF GTP 15.4696
521 3WXM GTP 15.4696
522 6FA4 GNP 15.6069
523 6FA4 D1W 15.6069
524 1CLU DBG 15.6627
525 5WLB GNP 15.6627
526 2UZI GTP 15.6627
527 3ZS9 ADP ALF 15.7895
528 1QF5 RPL 15.8537
529 1QF5 GDP 15.8537
530 3RAB GNP 15.9763
531 2A9K GDP 16.0428
532 1OW3 GDP 16.0622
533 5E95 GDP 16.0714
534 1LFD GNP 16.1677
535 6D5E GNP 16.1677
536 6D5H GNP 16.1677
537 6D5J GNP 16.1677
538 6BVL GNP 16.1677
539 6BVJ GNP 16.1677
540 6D56 GNP 16.1677
541 6D55 GNP 16.1677
542 6BVI GNP 16.1677
543 6D59 GNP 16.1677
544 6BVK GNP 16.1677
545 6D5G GNP 16.1677
546 6D5V GNP 16.1677
547 6D5L GNP 16.1677
548 6D5M GNP 16.1677
549 6BVM GNP 16.1677
550 1F2U ATP 16.2162
551 4OHY ANP 16.2602
552 1T9D P22 16.2602
553 1WQ1 GDP 16.2651
554 3DDC GNP 16.2651
555 1NVV GNP 16.2651
556 1NF3 GNP 16.4103
557 1YZQ GNP 16.4706
558 5IRC GDP 16.6667
559 4KVG GTP 16.6667
560 4GBM A3P 16.6667
561 1VG1 GDP 16.7568
562 4D0N GDP 16.7568
563 1VG9 GDP 16.7568
564 6BCB GSP 16.7568
565 6BCA GSP 16.7568
566 5HPY GDP 16.7568
567 6BC0 GSP 16.7568
568 3LXR GDP 16.7568
569 4BFW ZVW 16.9811
570 1CXZ GSP 17.033
571 2RCN GDP 17.0732
572 1NST A3P 17.0732
573 4DKX GDP 17.1296
574 1UAD GNP 17.1429
575 6C90 ADP 17.3077
576 4XSH GSP 17.3184
577 4HDO GNP 17.3653
578 4HDQ GNP 17.3653
579 3X1Z GNP 17.3653
580 1O3Y GTP 17.4699
581 1TX4 ALF GDP 17.5141
582 2FFQ GSP 17.5439
583 1UPT GTP 17.5439
584 1U8Z GDP 17.8571
585 1R0X ATP 17.8862
586 1KMQ GNP 17.9348
587 3GJ3 GDP 18.1818
588 1RE0 GDP 18.2927
589 1S9D GDP 18.2927
590 4XOI GTP 18.3333
591 1B7T ADP 19.2308
592 1KK8 BEF ADP 19.4805
593 1TQ4 GDP 19.5122
594 1Z0A GDP 19.5402
595 2A5J GDP 19.8953
596 1Z0F GDP 20.1117
597 5SZH GNP 20.2614
598 1P9B GDP 20.3252
599 2BME GNP 20.4301
600 2GJ8 ALF GDP 21.5116
601 5LTJ ADP 21.5447
602 4M9Q GNP 22.0264
603 3KUD GDP 22.2222
604 1GUA GNP 22.2222
605 3ZIA ATP 22.2222
606 3ZIA ADP 22.2222
607 1M2O GNP 22.6316
608 2V7Q ATP 22.7273
609 2V7Q ADP 22.7273
610 4V0K GDP 23.6686
611 4ZI2 GNP 23.6842
612 1Z0J GTP 23.7288
613 4GOJ GNP 23.8095
614 3AQ4 GDP 24.4565
615 1FZQ GDP 24.8619
616 2X77 GDP 25.3968
617 2QTV GNP 25.7485
618 5OEC GDP 25.8883
619 1MR3 G3D 25.9669
620 2J59 GTP 26.1905
621 5EE5 GTP 26.3158
622 1F6B GDP 26.7677
623 1ZD9 GDP 27.1277
624 1R4A GNP 27.8788
625 4BAS GNP 28.6432
626 1YZG GDP 29.6089
627 3DOE GTP 29.6875
628 4KAX GTP 30.1775
629 5DI3 GNP 30.8108
630 1Z0K GTP 30.814
631 1KSH GDP 31.1828
632 4YLG GDP 31.2139
633 3WY9 GDP 31.25
634 4D0G GTP 31.8841
635 1ZC3 GNP 32.7434
636 2A5F GTP 33.1429
637 1ZJ6 G3D 33.6898
638 2W83 GTP 34.5455
639 1J2J GTP 35.5556
640 3N5C GDP 35.8025
641 3PCR GTP 35.8025
Pocket No.: 2; Query (leader) PDB : 3AB3; Ligand: GDP; Similar sites found with APoc: 40
This union binding pocket(no: 2) in the query (biounit: 3ab3.bio2) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 3VM7 GLC 2.43902
2 4M52 FAD 2.43902
3 2F5Z FAD 2.48619
4 1EWK GLU 3.26531
5 3FSY SCA 3.91566
6 4UAP NGA 3.94737
7 6DZN AE3 3.9823
8 3GD8 GOL 4.03587
9 4IXH IMP 4.43213
10 1PVN MZP 4.97238
11 3LN9 FLC 5.03597
12 5J5R 6G1 5.28455
13 5J5R IMP 5.28455
14 5XQL C2E 5.28455
15 3CV2 OXL 5.52486
16 1I0B PEL 5.69106
17 2JJK R15 5.69106
18 1YOE RIB 6.09756
19 2CNT COA 6.25
20 5DNC ASN 6.90608
21 4R8L ASP 6.90608
22 3WIR BGC 6.91057
23 3KV8 FAH 7.19424
24 1YXM ADE 7.59076
25 1D8C SOR 7.72358
26 3ZZH ARG 7.81759
27 1LVL FAD 8.83978
28 4FBL SPD 8.94309
29 3L6C MLI 9.34959
30 2NGR AF3 9.42408
31 5GZ9 MAN 9.7561
32 1FEC FAD 10.5691
33 1U72 MTX 10.7527
34 1U72 NDP 10.7527
35 4AKB GAL 11.2782
36 6GVZ CHO 13.8211
37 1RJW ETF 13.8643
38 1P9B HDA 20.3252
39 1DCP HBI 25
40 1QHH ATP 33.913
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