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Receptor
PDB id Resolution Class Description Source Keywords
3A1S 1.5 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTUE OF THE CYTOSOLIC DOMAIN OF T. MARITIMA FEOB IRON IRANSPORTER IN GDP FORM I THERMOTOGA MARITIMA FEOB IRON TRANSPORTER SMALL GTPASE G PROTEIN GDI TRANSPORT PROTEIN
Ref.: STRUCTURAL BASIS OF NOVEL INTERACTIONS BETWEEN THE SMALL-GTPASE AND GDI-LIKE DOMAINS IN PROKARYOTIC FEOB IRON TRANSPORTER STRUCTURE V. 17 1345 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:1;
B:2;
Valid;
Valid;
none;
none;
Kd = 14.8 uM
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:3;
A:4;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
MPD A:6;
B:7;
Invalid;
Invalid;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
MRD A:5;
Invalid;
none;
submit data
118.174 C6 H14 O2 C[C@H...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3A1S 1.5 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTUE OF THE CYTOSOLIC DOMAIN OF T. MARITIMA FEOB IRON IRANSPORTER IN GDP FORM I THERMOTOGA MARITIMA FEOB IRON TRANSPORTER SMALL GTPASE G PROTEIN GDI TRANSPORT PROTEIN
Ref.: STRUCTURAL BASIS OF NOVEL INTERACTIONS BETWEEN THE SMALL-GTPASE AND GDI-LIKE DOMAINS IN PROKARYOTIC FEOB IRON TRANSPORTER STRUCTURE V. 17 1345 2009
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3A1S Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3A1U - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 3A1T Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 175 families.
1 3A1S Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 3A1U - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 3A1T Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 3B1V - GGM C18 H24 N7 O14 P3 CNc1ccccc1....
2 4NON Kd = 5.71 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3B1W - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3B1Y - GNH C10 H16 N6 O10 P2 c1nc2c(n1[....
5 3TAH - BGO C18 H22 N6 O12 P2 CNc1ccccc1....
6 3LX5 - AGO C18 H22 N7 O14 P3 CNc1ccccc1....
7 2WIC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4R98 - GNH C10 H16 N6 O10 P2 c1nc2c(n1[....
9 3A1S Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 3A1U - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 3A1T Kd = 14.8 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3A1S; Ligand: GDP; Similar sites found with APoc: 668
This union binding pocket(no: 1) in the query (biounit: 3a1s.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5KUT GDP None
2 2XTN GTP None
3 2HT6 GDP None
4 4BAS GNP None
5 1CJW COT None
6 1KUV CA5 None
7 1W4R TTP 1.02564
8 5XDR ADP 1.55039
9 4V03 ADP 1.55642
10 3RWO GDP 1.62162
11 1X1R GDP 1.68539
12 4TMK T5A 1.87793
13 2J0V GDP 1.88679
14 1DCP HBI 1.92308
15 5HCN GCP 1.93798
16 5JCP GDP ALF 1.93798
17 2O0J ADP 1.93798
18 4PFO ADP 1.93798
19 1X8J A3P 1.93798
20 5H4S RAM 1.93798
21 1OYY AGS 1.93798
22 1GZ4 ATP 1.93798
23 2CBZ ATP 2.1097
24 4UXH T5A 2.17391
25 2CHG ANP 2.21239
26 4QAG F95 2.25564
27 4AG5 ADP 2.32558
28 4GOX A3P 2.32558
29 2GMV UN8 2.32558
30 2GMV PEP 2.32558
31 1NHX FTB 2.32558
32 1NHX PEP 2.32558
33 4RZ3 ADP 2.32558
34 1NST A3P 2.32558
35 3FVQ ATP 2.32558
36 3E1T FAD 2.32558
37 3DKP ADP 2.44898
38 3SBD GNP 2.6738
39 4KVA GTP 2.71318
40 3IO3 ADP 2.71318
41 2IS6 ADP 2.71318
42 5GVR LMR 2.71318
43 5H68 AGS 2.71318
44 4YJ1 ADP 2.71318
45 5I0H ADP BEF 2.71318
46 3TBK ANP 2.71318
47 1R0X ATP 2.71318
48 4ZDJ UTP 2.71318
49 4PJ3 ANP 2.71318
50 1Q20 A3P 2.71318
51 1Q20 PLO 2.71318
52 4MDH NAD 2.71318
53 4ITM ATP 2.71318
54 1B8U NAD 2.71318
55 1B8U OAA 2.71318
56 5MDH NAD 2.71318
57 5J1J ANP 2.80702
58 4Z7X 3CX 2.94118
59 1BO4 COA 2.97619
60 2VBQ BSJ 3.0303
61 1TQ4 GDP 3.10078
62 2DPY ADP 3.10078
63 3P4X ADP 3.10078
64 1XMV ADP 3.10078
65 1T5C ADP 3.10078
66 4FRZ ADP 3.10078
67 1GOJ ADP 3.10078
68 5NM7 GLY 3.10078
69 6B4K ANP 3.10078
70 4YS0 ADP 3.10078
71 5HV7 RBL 3.10078
72 1G3M A3P 3.10078
73 1G3M PCQ 3.10078
74 3ITJ CIT 3.10078
75 2ZE3 AKG 3.10078
76 2ZJ5 ADP 3.10078
77 2NGR GDP 3.14136
78 1GRN GDP 3.14136
79 4ITR GDP 3.14136
80 2WMO GTP 3.15789
81 1MH1 GNP 3.22581
82 4KFU ACP 3.30189
83 4YC7 GNP 3.31492
84 4R2I ANP 3.33333
85 3B7G ANP 3.47826
86 2WKQ GTP 3.48837
87 2XTZ GSP 3.48837
88 5TSH ADP 3.48837
89 4OHY ANP 3.48837
90 2WOJ ADP ALF 3.48837
91 3ZS9 ADP ALF 3.48837
92 5TSH ANP 3.48837
93 2QZ4 ADP 3.48837
94 4ZNL BEF ADP 3.48837
95 5EXT ADP 3.48837
96 1P9B GDP 3.48837
97 2ZPA ADP 3.48837
98 1VKJ A3P 3.48837
99 3IUY AMP 3.48837
100 4A4Z ANP 3.48837
101 2I4I AMP 3.48837
102 5G41 AP5 3.58744
103 1NJF AGS 3.6
104 1NJF ADP 3.6
105 6B8B ADP 3.61446
106 3VX3 ADP 3.62903
107 1ZIN AP5 3.68664
108 1S3G AP5 3.68664
109 4MKG AP5 3.68664
110 3FB4 AP5 3.7037
111 4LPS GDP 3.71901
112 1G3Q ADP 3.79747
113 2ORV 4TA 3.84615
114 2F3R G5P 3.86473
115 2FJU GSP 3.87597
116 1BH2 GSP 3.87597
117 2OM2 GDP 3.87597
118 1Y3A GDP 3.87597
119 3FWY ADP 3.87597
120 3A4M ADP 3.87597
121 4IHQ ADP 3.87597
122 4HSE ADP 3.87597
123 2FAH GDP 3.87597
124 4IOK XPO 3.87597
125 4IOK ADP 3.87597
126 4XGU ADP 3.87597
127 3BOS CDP 3.87597
128 3LRE ADP 3.87597
129 2NCD ADP 3.87597
130 4GBM A3P 3.87597
131 3NHB ADP 3.87597
132 4PX9 ADP 3.87597
133 4WEI GLC GAL 3.87597
134 1AQU A3P 3.87597
135 4W93 3L9 3.87597
136 1PCA CIT 3.87597
137 3RC3 ANP 3.87597
138 2IL4 COA 3.8835
139 2BEK ATP 3.89105
140 1W7J ADP BEF 3.97351
141 4WOP CTP 4
142 5WDR GNP 4.09357
143 1ION ADP 4.11523
144 1EK0 GNP 4.11765
145 4X8O AP5 4.20561
146 1GP2 GDP 4.22535
147 5WC2 ADP 4.26357
148 1IHU ADP 4.26357
149 1IHU AF3 4.26357
150 4LYA ATP 4.26357
151 3FKQ ATP 4.26357
152 5ZBR ANP 4.26357
153 2GKS ADP 4.26357
154 5IRR GSP 4.26357
155 3BFV ADP 4.26357
156 1BG2 ADP 4.26357
157 1LVK MNT BEF 4.26357
158 5VHC BEF ADP 4.26357
159 6A20 ADP 4.26357
160 4JLV ADP 4.26357
161 3BFX A3P 4.26357
162 6FAA ADP 4.26357
163 1J78 OLA 4.26357
164 1RM0 NAI 4.26357
165 2IXE ATP 4.26357
166 1M7G AV2 4.2654
167 1M7G ADP 4.2654
168 1M7G ADX 4.2654
169 2A9K GDP 4.27807
170 4QRH 0O2 4.28571
171 1KK8 BEF ADP 4.31655
172 5MVR ADP 4.32099
173 1YTM ATP 4.32331
174 1KMQ GNP 4.34783
175 2QQ0 ANP 4.34783
176 2QQ0 THM 4.34783
177 2QQ0 TMP 4.34783
178 2QQ0 ADP 4.34783
179 4YDS ATP 4.38596
180 1GWN GTP 4.39024
181 1MR3 G3D 4.41989
182 4XOI GTP 4.44444
183 2VOH CIT 4.4586
184 2GCN GDP 4.47761
185 2GCO GNP 4.47761
186 5XKT GNP 4.5
187 1TX4 ALF GDP 4.51977
188 3QXC ATP 4.54545
189 1ZC3 GNP 4.57143
190 1UAD GNP 4.57143
191 3QBT GNP 4.5977
192 4LHW GNP 4.5977
193 4NU0 AP5 4.60829
194 5YT0 GDP 4.65116
195 1SKQ GDP 4.65116
196 3DC4 ADP 4.65116
197 2C9O ADP 4.65116
198 5ZXD ATP 4.65116
199 3FYH ADP 4.65116
200 5BYK OAQ 4.65116
201 5BYK A3P 4.65116
202 3EWA ANP 4.65116
203 4WZ6 ATP 4.65116
204 2GDJ ANP 4.65116
205 2GK6 ADP 4.65116
206 5MEX SZZ 4.65116
207 5MEX PAP 4.65116
208 3TO7 COA 4.65116
209 1OW3 GDP 4.66321
210 1U8Z GDP 4.7619
211 5UIV ADP 4.84582
212 1M7B GTP 4.8913
213 1YRB GDP 5.03876
214 4RD0 GDP 5.03876
215 4ZKD GDP 5.03876
216 6AU6 GDP 5.03876
217 5H7J GCP 5.03876
218 1V8K ANP 5.03876
219 5IRN ADP 5.03876
220 1FP6 ADP 5.03876
221 1R6B ADP 5.03876
222 3ZFD ANP 5.03876
223 1XEX ATP 5.03876
224 5LB3 ADP 5.03876
225 1G6O ADP 5.03876
226 2XAU ADP 5.03876
227 3KTA AP5 5.03876
228 4IEE AGS 5.03876
229 2J5V PCA 5.03876
230 3CV2 OXL 5.03876
231 1VHT BA3 5.04587
232 1LVG ADP 5.05051
233 1HTW ADP 5.06329
234 5XC5 GTP 5.11364
235 4KVX ACO 5.12821
236 1KO8 6PG 5.14286
237 1OE0 TTP 5.21739
238 2PZE ATP 5.24017
239 1G16 GDP 5.29412
240 6BCA GSP 5.29801
241 5G3Y ADP 5.30973
242 6BC0 GSP 5.33333
243 4KVG GTP 5.35714
244 1ZUI SKM 5.35714
245 2JAQ DCP 5.36585
246 4HDO GNP 5.38922
247 3X1Z GNP 5.38922
248 2EFE GNH 5.42636
249 4LC1 GDP 5.42636
250 2ODE ALF GDP 5.42636
251 1KK1 GNP 5.42636
252 1DAR GDP 5.42636
253 6CRK GDP 5.42636
254 2Y65 ADP 5.42636
255 2OBM ADP 5.42636
256 6CS8 F9Y 5.42636
257 1RRC ADP 5.42636
258 2VVG ADP 5.42636
259 1SVK ALF GDP 5.42636
260 1QF9 ALF 5.42636
261 1QF9 ADP 5.42636
262 1QF9 C5P 5.42636
263 3MGB PAP 5.42636
264 1OBB NAD 5.42636
265 1Y63 ADP 5.43478
266 5J1S ATP 5.43933
267 1NF3 GNP 5.46875
268 5U32 GDP 5.50847
269 3KJI ADP 5.51181
270 4MKF AP5 5.52995
271 4TL6 ANP 5.5336
272 1D5C GDP 5.55556
273 4DKX GDP 5.55556
274 3IIJ ADP 5.55556
275 4BQS ADP 5.68182
276 4BQS K2Q 5.68182
277 1TAD GDP 5.81395
278 1TAD ALF 5.81395
279 3MD0 GDP 5.81395
280 2XT3 ADP 5.81395
281 3T34 GDP 5.81395
282 1E2K TMC 5.81395
283 5M7P ADP 5.81395
284 2CE7 ADP 5.81395
285 5Z69 AGS 5.81395
286 2AWN ADP 5.81395
287 3DZD ADP 5.81395
288 5LTJ ADP 5.81395
289 5LTJ BEF 5.81395
290 2JJK R15 5.81395
291 5TVJ COA 5.81395
292 5TVJ 7LF 5.81395
293 4KBF AMP 5.81395
294 5MZN ADP 5.81395
295 3SXN COA 5.81395
296 2FFQ GSP 5.84795
297 5K04 COA 5.88235
298 5TIV A3P 5.92885
299 2ZE7 AMP 5.92885
300 2ZE7 DST 5.92885
301 1UJ2 ADP 5.95238
302 1UJ2 C5P 5.95238
303 3AQ4 GDP 5.97826
304 5VGR GDP 6.03248
305 6AIC AMP 6.07477
306 1DS6 GDP 6.11111
307 1Z83 AP5 6.12245
308 6BCB GSP 6.16438
309 1GUA GNP 6.17284
310 5L3V GDP 6.20155
311 3AB3 GDP 6.20155
312 4NE2 ADP 6.20155
313 4NE2 SH2 6.20155
314 1SQ5 ADP 6.20155
315 1F9V ADP 6.20155
316 1ZCB GDP 6.20155
317 2Z5F A3P 6.20155
318 4CVN ADP 6.28272
319 1XX6 ADP 6.28272
320 2WHX ADP 6.31068
321 5LLB 6YZ 6.3197
322 1G7C 5GP 6.38298
323 3CX8 GSP 6.40394
324 4QM7 GTP 6.43275
325 2W58 ADP 6.43564
326 3RAB GNP 6.50888
327 3T1O GDP 6.58915
328 2Q2Y ADP 6.58915
329 2Q2Y MKR 6.58915
330 3HU3 AGS 6.58915
331 4D81 ADP 6.58915
332 4FCW ADP 6.58915
333 5IFS ADP 6.58915
334 3QVV 3QV 6.58915
335 3QVV A3P 6.58915
336 2CVQ NDP 6.58915
337 3H4S ADP 6.66667
338 2Y8E GNP 6.70391
339 2B8W ALF 5GP 6.70732
340 2B8T THM 6.72646
341 2ZTS ADP 6.77291
342 2PL3 ADP 6.77966
343 4XSH GSP 6.84932
344 5SZH GNP 6.89655
345 1UKZ ADP 6.89655
346 1RL4 BL5 6.91489
347 4YLG GDP 6.93642
348 4H1V GNP 6.97674
349 1G7S GDP 6.97674
350 1IN4 ADP 6.97674
351 1Z6T ADP 6.97674
352 1OS1 PYR 6.97674
353 1OS1 ATP 6.97674
354 4LJ9 ACP 6.97674
355 6C90 ADP 6.97674
356 2ZPT A3P 6.97674
357 2GWH A3P 6.97674
358 1U1I NAD 6.97674
359 3MJH GTP 7.14286
360 2PEZ DAT 7.26257
361 2PEZ GGZ 7.26257
362 3LXR GDP 7.29167
363 4HUT ATP 7.32984
364 2BOS GLA GAL GLC NBU 7.35294
365 3TMK T5A 7.36434
366 4ZG4 VO4 ADP 7.36434
367 3Q9L ATP 7.36434
368 5N69 ADP 7.36434
369 1D6Z HY1 7.36434
370 3H4V NAP 7.36434
371 3H4V DVP 7.36434
372 3OZ2 OZ2 7.36434
373 1HE1 GDP 7.40741
374 5LEF GTP 7.57576
375 5KSZ GCP 7.75194
376 5CK5 GDP 7.75194
377 1IWE IMP 7.75194
378 2QG6 NMN 7.75194
379 5I34 GDP 7.75194
380 1F5N GNP 7.75194
381 2FSH ANP 7.75194
382 4E03 ADP 7.76699
383 1JJV ATP 7.76699
384 3Q72 GNP 7.83133
385 2BME GNP 8.06452
386 3T12 GDP ALF 8.08823
387 3ZIA ATP 8.13953
388 3ZIA ADP 8.13953
389 4BFW ZVW 8.13953
390 2ZR9 DTP 8.13953
391 1W5T ANP 8.13953
392 1W5T ADP 8.13953
393 1J99 AND 8.13953
394 2D2F ADP 8.4
395 1CS4 GSP 8.49057
396 3CPJ GDP 8.52018
397 2IYL GDP 8.52713
398 2OFW ADX 8.52713
399 4Q1A 2XZ 8.52713
400 4Q1A UDP 8.52713
401 3QKT ANP 8.52713
402 5H7K GDP 8.56423
403 2QN6 GDP 8.60215
404 2VB6 ADP BEF 8.72483
405 4U5X GNP 8.91473
406 3ZQ6 ADP ALF 8.91473
407 3E70 GDP 8.91473
408 4OI4 ATP 8.91473
409 1G41 ADP 8.91473
410 1CR1 TTP 8.91473
411 1QF5 GDP 8.91473
412 1QF5 RPL 8.91473
413 1OFH ADP 8.91473
414 5K5Z ANP 8.91473
415 1B7T ADP 8.91473
416 3BER AMP 8.91473
417 4IDN GNP 8.91473
418 6EL3 NAP 8.91473
419 5AK0 8V1 9.30233
420 1K6M AGS 9.30233
421 1SVM ATP 9.30233
422 1XP8 AGS 9.30233
423 5NUE NAD 9.33735
424 2F9L GDP 9.54774
425 5E5U MLI 9.54774
426 5BN3 ADP 9.68992
427 5WRI A3P 9.68992
428 5WRJ A3P 9.68992
429 1P72 ADP 9.68992
430 4TTQ ATP 9.76744
431 5HPY GDP 9.91379
432 2QEN ADP 10.0775
433 5HR5 ADP 10.0775
434 5YV5 ADP 10.0775
435 4PPF FLC 10.0775
436 1YQT ADP 10.0775
437 3EZ2 ADP 10.0775
438 1FNN ADP 10.0775
439 2HF9 GSP 10.177
440 1E96 GTP 10.3448
441 4P4T GDP 10.4651
442 5GOE GDP 10.4651
443 4WZA ADP 10.4651
444 4WZA ACP 10.4651
445 4NCN GTP 10.4651
446 4TMZ GSP 10.4651
447 2BIF ANP 10.4651
448 2BIF SIN 10.4651
449 4QOS ADP 10.4651
450 3LXK MI1 10.4651
451 1A4R GNH 10.4712
452 1A4R GDP 10.4712
453 2W2X GSP 10.4839
454 3PCR GTP 10.4938
455 4DID GDP 10.5263
456 5JCZ GDP 10.6145
457 4LX0 BEF GDP 10.7345
458 2J59 GTP 10.8434
459 5M04 GDP 10.8527
460 2FNA ADP 10.8527
461 2HV8 GTP 11.0465
462 5UPK GNP 11.2403
463 3EC1 GDP 11.2403
464 5OEC GDP 11.2403
465 2OZE AGS 11.2403
466 3RLF ANP 11.2403
467 2D7C GTP 11.3772
468 1DAK DPU 11.6071
469 1DAK ADP 11.6071
470 3TK1 GDP 11.6279
471 1CXZ GSP 11.6279
472 1RJ9 GCP 11.6279
473 5FHD ADP ALF 11.6279
474 5FTB ANP 11.6279
475 3BC1 GNP 11.8644
476 3H86 AP5 11.9792
477 3WYA GDP 11.9816
478 3WY9 GDP 11.9816
479 4XTR ATP 11.9816
480 4XVU ATP 11.9816
481 4XTR ADP 11.9816
482 2KIN ADP 12
483 1NY5 ADP 12.0155
484 1GXU 2HP 12.0879
485 2EW1 GNP 12.4378
486 3IT6 ORN 12.6829
487 1PUJ GNP 12.7907
488 1NN5 ANP 12.7907
489 1NN5 2DT 12.7907
490 5Y6N ADP 13.1783
491 1T8U UAP SGN IDS SGN 13.1783
492 1T8U A3P 13.1783
493 3UIE ANP 13.5
494 5L3S GNP 13.5135
495 5L3S G 13.5135
496 2RCN GDP 13.5659
497 5L3W GDP 13.7255
498 3WYG GTP 13.7363
499 1I4D GDP 13.8393
500 5O74 GDP 13.8889
501 4HI0 GDP 13.9535
502 4R43 GDP 13.9535
503 3NKV GNP 14.2857
504 4D0N GDP 14.3411
505 2G77 GDP 14.3411
506 3TNF GNP 14.3411
507 1XKV ATP 14.3411
508 2ZEJ GDP 14.6739
509 1G4U GDP 14.7287
510 1F2U ATP 14.7651
511 2RGX AP5 15.0485
512 3CNL GNP 15.1163
513 2JLR ANP 15.1163
514 6DEF GCP 15.1163
515 1WDT GTP 15.5039
516 5X8G S0N 15.5039
517 1KAO GDP 15.5689
518 6G14 G4P 15.8915
519 2CDN ADP 15.9204
520 3GDH SAH 16.1826
521 3T5G GDP 16.5746
522 1MKY GDP 16.6667
523 5BQ5 ADP BEF 16.9312
524 3U6B GDP 17.0543
525 5JBQ GDP 17.0543
526 3U6K GDP 17.0543
527 1D8T GDP 17.0543
528 4G5G GDP 17.0543
529 4P3Y GDP 17.0543
530 2BVN GNP 17.0543
531 4PC3 GDP 17.0543
532 1H65 GDP 17.0543
533 5ZB0 ADP 17.0543
534 5ZB0 TYD 17.0543
535 3TKL GTP 17.4419
536 2YOH WMJ 17.619
537 3SFV GDP 17.6796
538 4J0Q GDP 17.8295
539 6BSX GDP 17.9775
540 6BSX E7S 17.9775
541 2V7Q ATP 18.0147
542 1W0J ADP 18.0147
543 2CK3 ANP 18.0147
544 1W0J ADP BEF 18.0147
545 2V7Q ADP 18.0147
546 2CK3 ADP 18.0147
547 1D2E GDP 18.2171
548 1WF3 GNP 18.6047
549 5FG3 GDP 18.6047
550 2C78 GNP 18.6047
551 2C77 GNP 18.6047
552 5W75 GDP 18.6047
553 2OG2 MLI 18.6047
554 3B9Q MLI 18.6047
555 5L3R GCP 18.6047
556 1AKY AP5 18.6364
557 5KSP GDP 18.9474
558 5W7Q GDP 18.9922
559 5W76 GDP 19.3798
560 3BD9 A3P 19.3798
561 5IRC GDP 19.403
562 1RYH GNP 19.7044
563 4M9Q GNP 20.155
564 3VMF GTP 20.5426
565 3WXM GTP 20.5426
566 4D0G GTP 20.5714
567 3M1I GTP 20.9302
568 3WYF GTP 20.9302
569 1FQK GDP 21.0884
570 1FQK ALF 21.0884
571 1SVI GDP 21.7054
572 3DOE GTP 21.875
573 2QTV GNP 22.1557
574 5Z2M GTP 22.1591
575 5DI3 GNP 22.1622
576 1KSH GDP 22.5806
577 5KDO GDP 22.973
578 1GOT GDP 23.2877
579 4C4P GNP 23.3645
580 1FQJ GDP 23.8095
581 1FQJ ALF 23.8095
582 3DEF GDP 24.031
583 5DIF GNP 24.0506
584 5UWI GNP 24.0506
585 5UWO GNP 24.0506
586 5UWU GNP 24.0506
587 5UWW GNP 24.0506
588 5UWP GNP 24.0506
589 5UWR GNP 24.0506
590 5UWH GNP 24.0506
591 5DHF GNP 24.0506
592 5UWQ GNP 24.0506
593 5UWJ GNP 24.0506
594 5UWT GNP 24.0506
595 5DI9 GNP 24.0506
596 3N5C GDP 24.4186
597 2W83 GTP 24.4186
598 2A5F GTP 24.4186
599 4KAX GTP 24.4186
600 3GJ4 GDP 25.7919
601 3GJ7 GDP 25.7919
602 3GJ0 GDP 25.7919
603 3GJ3 GDP 25.7919
604 3GJ5 GDP 25.7919
605 3GJ8 GDP 25.7919
606 5BXQ GDP 26.3889
607 4HAT GNP 26.3889
608 3CH5 GDP 26.3889
609 3GJX GTP 26.3889
610 1IBR GNP 26.3889
611 3E5H GNP 26.4045
612 1U0J ADP 26.7442
613 2FH5 GTP 27.1318
614 2D7D ADP 27.5
615 2CJW GDP 27.5194
616 3Q85 GNP 28.4024
617 6CIT GNP 28.5714
618 1KY3 GDP 28.6822
619 4DCT GDP 29.0698
620 1TU3 GNP 29.1139
621 4B47 GDP 29.845
622 3QF7 ANP 30
623 2HCJ GDP 32.4324
624 1X6V ADP 33.3333
625 5OCG GNP 34.3915
626 5UQW GDP 34.3915
627 3REF GDP 34.5361
628 5TAR GDP 35.1351
629 5TB5 GDP 35.1351
630 2X77 GDP 35.9788
631 4ZI2 GNP 36.3158
632 4GOJ GNP 36.5079
633 1FZQ GDP 37.5691
634 6FA4 GNP 37.5723
635 5O2T GSP 38.4615
636 5WLB GNP 39.1566
637 1UPT GTP 39.1813
638 5EE5 GTP 40.3509
639 2GJ8 ALF GDP 40.6977
640 4V0K GDP 40.8284
641 3PQC GDP 41.0256
642 4HDQ GNP 42.3077
643 2C5L GTP 43.3526
644 6D5H GNP 43.7126
645 6BVK GNP 43.7126
646 6D5V GNP 43.7126
647 6BVJ GNP 43.7126
648 6BVI GNP 43.7126
649 6D59 GNP 43.7126
650 6BVL GNP 43.7126
651 6D5G GNP 43.7126
652 6D5L GNP 43.7126
653 6D56 GNP 43.7126
654 6D55 GNP 43.7126
655 6D5J GNP 43.7126
656 6D5E GNP 43.7126
657 1LFD GNP 43.7126
658 6BVM GNP 43.7126
659 6D5M GNP 43.7126
660 4K81 GTP 43.8596
661 3KUD GDP 43.9759
662 1WQ1 GDP 43.9759
663 2UZI GTP 43.9759
664 1NVV GNP 43.9759
665 3DDC GNP 43.9759
666 1CLU DBG 44.5783
667 5E95 GDP 44.6429
668 5UWS GNP 45.4545
Pocket No.: 2; Query (leader) PDB : 3A1S; Ligand: GDP; Similar sites found with APoc: 22
This union binding pocket(no: 2) in the query (biounit: 3a1s.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5EP2 AZU 1.17188
2 4Z0G 5GP 1.93798
3 5VN0 NAI 1.93798
4 3GRU AMP 1.93798
5 6ECT SAM 1.93798
6 2RBK VN4 2.32558
7 3N7O N7O 3.53982
8 1PVN MZP 3.87597
9 1RM0 D6P 4.26357
10 3MB5 SAM 4.26357
11 3AB4 THR 4.49438
12 2V6G NAP 4.65116
13 1SC6 NAD 5.81395
14 4EBZ NAG NAG NAG NAG 5.81395
15 5H67 ATP 5.85106
16 4Z87 5GP 6.58915
17 2PWY SAH 8.52713
18 5NUF NAD 9.33735
19 2G77 AF3 14.3411
20 6C0B MLI 17.3077
21 2XZ9 PYR 20.155
22 1WQ1 AF3 43.9759
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