Receptor
PDB id Resolution Class Description Source Keywords
2ZPK 1.8 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF P20.1 FAB FRAGMENT IN COMPLEX WITH ITS PEPTIDE MUS MUSCULUS MOUSE IGG FAB FRAGMENT IN COMPLEX WITH ANTIGEN PEPTIDE IMMU
Ref.: NOVEL AFFINITY TAG SYSTEM USING STRUCTURALLY DEFINE ANTIBODY-TAG INTERACTION: APPLICATION TO SINGLE-STE PURIFICATION PROTEIN SCI. V. 17 2120 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL H:214;
I:214;
M:211;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
PRO ARG GLY TYR PRO GLY GLN VAL P:1;
Q:1;
Valid;
Valid;
none;
none;
submit data
787.872 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2ZPK 1.8 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF P20.1 FAB FRAGMENT IN COMPLEX WITH ITS PEPTIDE MUS MUSCULUS MOUSE IGG FAB FRAGMENT IN COMPLEX WITH ANTIGEN PEPTIDE IMMU
Ref.: NOVEL AFFINITY TAG SYSTEM USING STRUCTURALLY DEFINE ANTIBODY-TAG INTERACTION: APPLICATION TO SINGLE-STE PURIFICATION PROTEIN SCI. V. 17 2120 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 222 families.
1 2ZPK - PRO ARG GLY TYR PRO GLY GLN VAL n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3GJF Kd = 46 nM SER LEU LEU MET TRP ILE THR GLN VAL n/a n/a
2 2ZPK - PRO ARG GLY TYR PRO GLY GLN VAL n/a n/a
3 3ZKN - WZV C20 H20 F3 N5 O3 C[C@]1(CC(....
4 1W72 Kd = 14 nM GLU ALA ASP PRO THR GLY HIS SER TYR n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3GJF Kd = 46 nM SER LEU LEU MET TRP ILE THR GLN VAL n/a n/a
2 2ZPK - PRO ARG GLY TYR PRO GLY GLN VAL n/a n/a
3 3NIF - NIF C11 H15 N5 O S CCC1=NN2C(....
4 3ZDY - GLY ARG GLY ASP SER PRO n/a n/a
5 3ZE2 - GLY ARG GLY ASP SER PRO n/a n/a
6 2VDR - LEU GLY GLY ALA LYS GLN ARG GLY ASP VAL n/a n/a
7 3WFD - AXO C2 H5 N O C/C=N/O
8 4XTR - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 1W72 Kd = 14 nM GLU ALA ASP PRO THR GLY HIS SER TYR n/a n/a
10 6ID4 Kd = 0.00000145 M ALA ILE PHE GLN SER SER MET THR LYS n/a n/a
11 5X2N - ALA C3 H7 N O2 C[C@@H](C(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PRO ARG GLY TYR PRO GLY GLN VAL; Similar ligands found: 50
No: Ligand ECFP6 Tc MDL keys Tc
1 PRO ARG GLY TYR PRO GLY GLN VAL 1 1
2 LEU PHE GLY TYR PRO VAL TYR VAL 0.520833 0.920635
3 PHE ALA PRO GLY ASN TYR PRO 0.5 0.878788
4 LEU LEU PHE GLY PHE PRO VAL TYR VAL 0.5 0.920635
5 LEU LEU PHE GLY TYR PRO VAL TYR VAL 0.5 0.920635
6 DVA DPR GLY DSN DGN DHI DTY DAS DSN 0.487179 0.855072
7 PHE ALA PRO GLY ASN TYR PRO ALA LEU 0.487013 0.895522
8 ILE GLY PRO GLY ARG ALA PHE TYR VAL 0.469136 0.828571
9 ASP VAL GLN THR GLY ARG ARG PRO TYR GLU 0.466258 0.842857
10 PRO TYR ALA GLY GLU TPO ASP GLU 0.458065 0.757143
11 GLN ASN TYR PRO ILE VAL GLN 0.455782 0.876923
12 GLU SER ASP PRO ILE VAL ALA GLN TYR 0.45283 0.865672
13 LEU LEU PHE GLY LYS PRO VAL TYR VAL 0.449367 0.892308
14 GLU TYR LEU GLY LEU ASP VAL PRO VAL 0.448052 0.935484
15 PHE ALA PRO GLY ASN TYR PRO ALA TRP 0.447059 0.867647
16 ASP PHE GLU GLU ILE PRO GLY GLU TYR LEU 0.445122 0.907692
17 PRO THR SER TYR ALA GLY ASP ASP SER GLY 0.440789 0.8
18 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.439759 0.878788
19 PRO GLN PTR ILE PTR VAL PRO ALA 0.43871 0.805556
20 PRO SER TYR SEP PRO THR SEP PRO SER 0.437086 0.777778
21 PHE ALA PRO GLY PHE PHE PRO TYR LEU 0.435897 0.921875
22 PRO GLN PTR GLU GLU ILE PRO ILE 0.435897 0.814286
23 PRO GLN PTR GLU PTR ILE PRO ALA 0.433121 0.791667
24 PRO GLN PRO VAL ASP SER TRP VAL 0.432099 0.823529
25 ACE TYR PRO ILE GLN GLU THR 0.426667 0.904762
26 ILE GLY PRO GLY ARG ALA PHE TYR THR 0.42515 0.802817
27 GLU GLY GLN PTR GLN PRO GLN PRO ALA 0.424051 0.823529
28 ILE PRO ALA TYR GLY VAL LEU THR ILE 0.424051 0.892308
29 PRO TYR ALA GLY SEP TPO ASP GLU ASN 0.422078 0.746479
30 PHE GLN PRO GLN ASN GLY GLN PHE ILE 0.420382 0.791045
31 ILE LEU GLY PRO PRO GLY SER VAL TYR 0.416149 0.880597
32 TYR LEU GLU PRO GLY PRO VAL THR VAL 0.415094 0.907692
33 ASN ARG PRO VAL TYR ILE PRO PRO PRO PRO 0.414966 0.904762
34 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.410714 0.921875
35 SER PRO THR SER PRO SEP TYR SER PRO PRO 0.410256 0.763889
36 VAL SER GLN ASN TYR PRO ILE VAL GLN ASN 0.410256 0.838235
37 ALA PRO GLN PRO ALA PRO GLU ASN ALA TYR 0.410256 0.90625
38 ILE GLY PRO GLY ARG ALA PHE TYR ALA 0.409639 0.814286
39 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.408284 0.878788
40 ILE GLY PRO GLY ARG ALA PHE TYR THR ILE 0.408046 0.780822
41 PRO THR SEP PRO SER TYR 0.407895 0.763889
42 GLY VAL VAL ALA SER GLN PRO ALA ARG VAL 0.406897 0.8125
43 PHE ALA PRO GLY ASN TYI PRO ALA LEU 0.406061 0.833333
44 GLU PRO VAL GLU THR THR ASP TYR 0.403974 0.875
45 GLN VAL PRO SER ASP PRO TYR ASN TYR 0.403846 0.893939
46 ASN GLY TYR GLU ASN PRO THR TYR LYS 0.403614 0.850746
47 PRO ALA ILE LEU TYR ALA LEU LEU SER SER 0.402685 0.761194
48 GLN ASN GLY PTR VAL ASN PRO THR TYR 0.402516 0.783784
49 ASP PHE GLU GLU ILE PRO GLY GLU TYS LEU 0.402367 0.716049
50 ASN TYR THR PRO GLY PRO GLY THR ARG PHE 0.402299 0.794521
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
Feedback