Receptor
PDB id Resolution Class Description Source Keywords
2ZE9 2.3 Å EC: 3.1.4.4 CRYSTAL STRUCTURE OF H168A MUTANT OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS, AS A COMPLEX WITH P HOSPHATIDYLCHOLINE STREPTOMYCES ANTIBIOTICUS ALPHA-BETA-BETA-ALPHA SANDWICH HYDROLASE LIPID DEGRADATION SECRETED
Ref.: CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MES A:510;
Invalid;
none;
submit data
195.237 C6 H13 N O4 S C1COC...
PD7 A:511;
Valid;
none;
submit data
396.413 C17 H33 O8 P CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2ZE9 2.3 Å EC: 3.1.4.4 CRYSTAL STRUCTURE OF H168A MUTANT OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS, AS A COMPLEX WITH P HOSPHATIDYLCHOLINE STREPTOMYCES ANTIBIOTICUS ALPHA-BETA-BETA-ALPHA SANDWICH HYDROLASE LIPID DEGRADATION SECRETED
Ref.: CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM STREPTOMYCES ANTIBIOTICUS TO BE PUBLISHED
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2ZE9 - PD7 C17 H33 O8 P CCCCCCC(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2ZE9 - PD7 C17 H33 O8 P CCCCCCC(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2ZE9 - PD7 C17 H33 O8 P CCCCCCC(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PD7; Similar ligands found: 102
No: Ligand ECFP6 Tc MDL keys Tc
1 PD7 1 1
2 7P9 0.941176 1
3 6PH 0.921569 1
4 F57 0.921569 1
5 3PH 0.921569 1
6 LPP 0.921569 1
7 7PH 0.921569 1
8 44E 0.88 1
9 M7U 0.783333 1
10 D21 0.783333 0.976744
11 PA8 0.75 0.930233
12 PX8 0.736842 0.930233
13 PX2 0.736842 0.930233
14 TGL 0.673077 0.690476
15 9PE 0.671875 0.788462
16 XP5 0.671875 0.727273
17 CD4 0.666667 0.953488
18 8PE 0.65625 0.788462
19 PEF 0.65625 0.788462
20 PEV 0.65625 0.788462
21 PTY 0.65625 0.788462
22 PEH 0.65625 0.788462
23 PEE 0.646154 0.773585
24 LHG 0.646154 0.911111
25 PGT 0.646154 0.911111
26 CDL 0.630769 0.863636
27 HGX 0.626866 0.727273
28 P5S 0.626866 0.803922
29 PX4 0.626866 0.727273
30 HGP 0.626866 0.727273
31 PC7 0.626866 0.727273
32 PLD 0.626866 0.727273
33 6PL 0.626866 0.727273
34 LIO 0.626866 0.727273
35 PIF 0.614286 0.857143
36 44G 0.609375 0.911111
37 PII 0.608696 0.836735
38 CN3 0.591549 0.953488
39 HXG 0.590909 0.727273
40 PSF 0.590909 0.803922
41 PIO 0.589041 0.857143
42 IP9 0.589041 0.875
43 52N 0.589041 0.857143
44 3PE 0.588235 0.711538
45 PIZ 0.581081 0.875
46 AGA 0.57971 0.869565
47 L9Q 0.575342 0.773585
48 6OU 0.575342 0.773585
49 LOP 0.575342 0.773585
50 PC1 0.571429 0.685185
51 PCF 0.571429 0.685185
52 MC3 0.571429 0.685185
53 DGA 0.568965 0.697674
54 FAW 0.568965 0.697674
55 DDR 0.568965 0.697674
56 L2C 0.568965 0.697674
57 1EM 0.568965 0.697674
58 D3D 0.567568 0.891304
59 PGW 0.567568 0.891304
60 CN6 0.56338 0.953488
61 PGV 0.56 0.891304
62 DR9 0.56 0.891304
63 PGK 0.552632 0.854167
64 P6L 0.552632 0.891304
65 PCW 0.552632 0.714286
66 NKN 0.55 0.953488
67 NKO 0.55 0.953488
68 OZ2 0.545455 0.891304
69 P50 0.545455 0.803922
70 ZPE 0.539474 0.773585
71 PCK 0.538462 0.689655
72 B7N 0.538462 0.82
73 DGG 0.531646 0.854167
74 GP7 0.518519 0.773585
75 PEK 0.5125 0.773585
76 P3A 0.5125 0.851064
77 PIE 0.5125 0.764706
78 LBR 0.507692 0.644444
79 L9R 0.506329 0.672727
80 POV 0.506329 0.672727
81 PSC 0.506024 0.714286
82 NKP 0.478261 0.931818
83 T7X 0.476744 0.82
84 PDK 0.466667 0.683333
85 2JT 0.464286 0.659091
86 G2A 0.464286 0.659091
87 DLP 0.458824 0.672727
88 SQD 0.45679 0.609375
89 EPH 0.444444 0.773585
90 PC5 0.444444 0.603448
91 3PC 0.44 0.666667
92 BQ9 0.44 0.681818
93 1QW 0.433333 0.644444
94 GYM 0.433333 0.644444
95 DB4 0.424658 0.795918
96 PBU 0.421053 0.795918
97 LPC 0.418919 0.732143
98 LAP 0.418919 0.732143
99 LP3 0.418919 0.732143
100 PGM 0.408451 0.847826
101 5P5 0.402597 0.795918
102 PIB 0.402597 0.795918
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2ZE9; Ligand: PD7; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2ze9.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
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