Receptor
PDB id Resolution Class Description Source Keywords
2YNO 1.8 Å NON-ENZYME: OTHER YEAST BETAPRIME COP 1-304H6 SACCHAROMYCES CEREVISIAE PROTEIN TRANSPORT MEMBRANE TRAFFICKING COPI-MEDIATED TRAFFDILYSINE MOTIFS
Ref.: MOLECULAR BASIS FOR RECOGNITION OF DILYSINE TRAFFIC MOTIFS BY COPI. DEV.CELL V. 23 1255 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALA ALA ALA ALA ALA P:4;
Valid;
none;
submit data
358.419 n/a O=C(N...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4J73 1.44 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX SACCHAROMYCES CEREVISIAE BETA PROPELLER DILYSINE MOTIF ER RETRIEVAL SIGNAL COATOMERECOGNITION PROTEIN TRANSPORT
Ref.: RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOT COATOMER. EMBO J. V. 32 926 2013
Members (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
70% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4J84 - ALA ARG LYS LEU ASP n/a n/a
2 4J77 - ALA LYS GLU LYS SER ASP n/a n/a
3 4J79 - GLU LYS VAL HIS VAL GLN n/a n/a
4 2YNO - ALA ALA ALA ALA ALA n/a n/a
5 4J73 - PHE GLU ALA LYS LYS LEU VAL n/a n/a
6 4J81 - LYS PRO HIS SER ASP n/a n/a
7 2YNN - CYS THR PHE LYS THR LYS THR ASN n/a n/a
8 4J78 - LYS THR LYS LEU LEU n/a n/a
9 4J82 - LYS SER HIS GLN GLU n/a n/a
10 4J86 - THR PHE LYS LYS THR ASN n/a n/a
11 4J8B - LEU LYS THR LYS LEU LEU n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ALA ALA ALA ALA ALA; Similar ligands found: 19
No: Ligand ECFP6 Tc MDL keys Tc
1 ALA ALA ALA ALA ALA 1 1
2 ALA ALA ALA ALA 1 1
3 ALA LEU SER ARG GLN 0.659574 0.666667
4 ALA LEU SER ARG 0.617021 0.666667
5 ALA ALA ALA ALA ALA ALA ALA 0.615385 0.923077
6 ALA ALA SER ALA SER ALA 0.591837 0.648649
7 ALA ALA ALA 0.589744 0.923077
8 ALA GLY GLY ALA ALA ALA ALA ALA 0.566038 0.705882
9 ALA GLY ALA ALA 0.541667 0.727273
10 ALA LYS ALA ALA 0.537037 0.685714
11 ALA VAL ALA 0.5 0.92
12 ILE GLY LEU TRP LYS SER 0.491228 0.666667
13 DAL DAL 0.461538 0.846154
14 ALA GLU ALA ALA GLN ALA 0.460317 0.705882
15 ALA ALA ALA ALA SER ALA ALA 0.45283 0.648649
16 ALA THR ALA ALA 0.44 0.774194
17 LYS TYR PRO PHE VAL GLU PRO ILE 0.431818 0.724138
18 ALA ALA PHE 0.421053 0.766667
19 ALA ALA CE7 0.42 0.666667
Similar Ligands (3D)
Ligand no: 1; Ligand: ALA ALA ALA ALA ALA; Similar ligands found: 1
No: Ligand Similarity coefficient
1 ALA SER VAL SER ALA 0.8948
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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