Receptor
PDB id Resolution Class Description Source Keywords
2YGN 1.85 Å NON-ENZYME: OTHER WIF DOMAIN OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE HOMO SAPIENS SIGNALING PROTEIN WNT SIGNALING PATHWAY WNT ANTAGONIST MOCANCER GLYCOSAMINOGLYCAN
Ref.: MODULAR MECHANISM OF WNT SIGNALING INHIBITION BY WN INHIBITORY FACTOR 1 NAT.STRUCT.MOL.BIOL. V. 18 886 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:1181;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
NAG A:1180;
Part of Protein;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
PCF A:1179;
Valid;
none;
submit data
734.039 C40 H80 N O8 P CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2YGN 1.85 Å NON-ENZYME: OTHER WIF DOMAIN OF HUMAN WNT INHIBITORY FACTOR 1 IN COMPLEX WITH 1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE HOMO SAPIENS SIGNALING PROTEIN WNT SIGNALING PATHWAY WNT ANTAGONIST MOCANCER GLYCOSAMINOGLYCAN
Ref.: MODULAR MECHANISM OF WNT SIGNALING INHIBITION BY WN INHIBITORY FACTOR 1 NAT.STRUCT.MOL.BIOL. V. 18 886 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 2YGN - PCF C40 H80 N O8 P CCCCCCCCCC....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 2YGO - PCF C40 H80 N O8 P CCCCCCCCCC....
2 2YGP - PCF C40 H80 N O8 P CCCCCCCCCC....
3 2YGN - PCF C40 H80 N O8 P CCCCCCCCCC....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 2YGO - PCF C40 H80 N O8 P CCCCCCCCCC....
2 2YGP - PCF C40 H80 N O8 P CCCCCCCCCC....
3 2YGN - PCF C40 H80 N O8 P CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PCF; Similar ligands found: 79
No: Ligand ECFP6 Tc MDL keys Tc
1 PCF 1 1
2 PC1 1 1
3 MC3 1 1
4 L9R 0.873239 0.98
5 DLP 0.769231 0.98
6 3PE 0.768116 0.811321
7 HGP 0.732394 0.924528
8 LIO 0.732394 0.924528
9 PC7 0.732394 0.924528
10 PLD 0.732394 0.924528
11 HGX 0.732394 0.924528
12 6PL 0.732394 0.924528
13 CDL 0.714286 0.745098
14 XP5 0.680556 0.924528
15 PX2 0.661765 0.730769
16 PCW 0.65 0.907407
17 AGA 0.64 0.690909
18 PCK 0.634146 0.875
19 6PH 0.623188 0.685185
20 7PH 0.623188 0.685185
21 3PH 0.623188 0.685185
22 LPP 0.623188 0.685185
23 7P9 0.614286 0.685185
24 PEF 0.6 0.724138
25 PEH 0.6 0.724138
26 PEV 0.6 0.724138
27 PTY 0.6 0.724138
28 8PE 0.6 0.724138
29 PSC 0.597701 0.907407
30 9PE 0.592105 0.724138
31 P3A 0.588235 0.678571
32 PD7 0.571429 0.685185
33 PEE 0.571429 0.741379
34 CD4 0.565789 0.685185
35 3PC 0.564103 0.979592
36 8ND 0.555556 0.62963
37 PIE 0.551724 0.644068
38 PFS 0.551282 1
39 PGT 0.551282 0.660714
40 M7U 0.551282 0.685185
41 LHG 0.551282 0.660714
42 P5S 0.5375 0.706897
43 L9Q 0.535714 0.711864
44 LOP 0.535714 0.711864
45 PC5 0.532468 0.886792
46 LP3 0.525641 0.890909
47 LAP 0.525641 0.890909
48 LPC 0.525641 0.890909
49 PII 0.52439 0.616667
50 PIZ 0.523256 0.616667
51 44E 0.521127 0.685185
52 CN3 0.511905 0.685185
53 PIF 0.511905 0.606557
54 IP9 0.511628 0.616667
55 ZPE 0.505747 0.711864
56 GP7 0.505495 0.711864
57 PGW 0.494253 0.649123
58 52N 0.494253 0.606557
59 PIO 0.494253 0.606557
60 DR9 0.488636 0.649123
61 PGV 0.488636 0.649123
62 CN6 0.488095 0.685185
63 PEK 0.483516 0.711864
64 PGK 0.483146 0.627119
65 P6L 0.483146 0.649123
66 OZ2 0.477778 0.649123
67 B7N 0.472527 0.606557
68 42H 0.471264 0.875
69 P42 0.470588 0.87037
70 DPV 0.470588 0.877551
71 DGG 0.467391 0.627119
72 44G 0.4625 0.660714
73 PGM 0.461538 0.672727
74 PSF 0.451219 0.706897
75 EPH 0.44 0.711864
76 PDK 0.431373 0.714286
77 T7X 0.424242 0.606557
78 OCB 0.413333 0.788462
79 NKN 0.407895 0.654545
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2YGN; Ligand: PCF; Similar sites found: 279
This union binding pocket(no: 1) in the query (biounit: 2ygn.bio1) has 30 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1UO5 PIH 0.002819 0.49338 None
2 3BY8 MLT 0.001831 0.467 None
3 1UO4 PIH 0.00566 0.46648 None
4 1NU4 MLA 0.008736 0.45622 None
5 4B16 NAG 0.008822 0.45599 None
6 1V7R CIT 0.01598 0.44191 None
7 1BTN I3P 0.01964 0.4408 None
8 2QLX RM4 0.009046 0.43359 None
9 3GM5 CIT 0.007804 0.43061 None
10 2WCV FUC 0.00443 0.42543 None
11 1Y75 NAG 0.00451 0.4251 None
12 1X8X TYR 0.004949 0.41865 None
13 5RHN 8BR 0.002664 0.41611 None
14 3T2W BTN 0.006636 0.41344 None
15 1I0Z OXM 0.04266 0.41196 None
16 3KPE TM3 0.02112 0.41042 None
17 1EPB REA 0.01478 0.40622 None
18 1SJW NGV 0.005093 0.40554 None
19 3GF2 SAL 0.0446 0.40514 None
20 2P8O BVA 0.004204 0.40483 None
21 4F4S EFO 0.01728 0.4048 None
22 2PR5 FMN 0.003447 0.40424 None
23 1Q3P GLU ALA GLN THR ARG LEU 0.0148 0.4033 None
24 3EW2 BTN 0.0151 0.40293 None
25 2FR6 URI 0.004195 0.4012 None
26 1NF8 ISC 0.01095 0.40047 None
27 1PTR PRB 0.003416 0.45397 1.28205
28 2Q37 3AL 0.002792 0.44509 1.28205
29 3E81 SLB 0.006079 0.42991 1.28205
30 1V6A TRE 0.009051 0.42213 1.28205
31 3L0E G58 0.0003219 0.4131 1.28205
32 4FGC PQ0 0.01995 0.40664 1.28205
33 2YVF NAD 0.003656 0.4051 1.28205
34 1Y2W NAG 0.005212 0.43877 1.40845
35 2IZ1 ATR 0.002074 0.45736 1.92308
36 1ZS6 ADP 0.003584 0.4293 1.92308
37 1B74 DGN 0.03258 0.41208 1.92308
38 1AX2 NDG GAL 0.01346 0.40954 1.92308
39 1EYE PMM 0.006936 0.40836 1.92308
40 2FEQ 34P 0.004516 0.40369 1.92308
41 1K6M AGS 0.002478 0.40212 1.92308
42 3QDW NDG 0.002321 0.46204 2.0979
43 3QDY CBS 0.01232 0.42711 2.0979
44 3QDW A2G 0.03349 0.41753 2.0979
45 3QDT A2G GAL 0.03841 0.40845 2.0979
46 2ZSC BTN 0.002571 0.42097 2.12766
47 4OB6 S2T 0.000508 0.4431 2.34604
48 1YRX FMN 0.004493 0.41161 2.47934
49 1Y1A GSH 0.004363 0.49017 2.5641
50 2ZJF BSU 0.0006165 0.45561 2.5641
51 1RZM E4P 0.003371 0.45425 2.5641
52 2JFV FLC 0.002429 0.45418 2.5641
53 4NAO AKG 0.007054 0.4388 2.5641
54 1T3D CYS 0.007268 0.43817 2.5641
55 1U5R ATP 0.001872 0.42186 2.5641
56 1RYD GLC 0.01662 0.4153 2.5641
57 3K5X P8D 0.008268 0.40952 2.5641
58 1RZM PEP 0.01537 0.40702 2.5641
59 2RCN GDP 0.009923 0.40628 2.5641
60 4K30 NLG 0.01612 0.40612 2.5641
61 4R3L COA 0.005265 0.4031 2.5641
62 3V1V GST 0.005324 0.40107 2.5641
63 3JZ0 CLY 0.04399 0.40056 2.5641
64 1N9L FMN 0.004133 0.40143 2.75229
65 1Z42 HBA 0.001075 0.52056 3.20513
66 1RYI GOA 0.002146 0.4957 3.20513
67 1Z44 NPO 0.008779 0.46528 3.20513
68 2V5E SCR 0.006063 0.46485 3.20513
69 2Z9V PXM 0.001967 0.44589 3.20513
70 4UAL 3FV 0.0004995 0.43862 3.20513
71 3MAG 3MA 0.02025 0.43629 3.20513
72 5EQU AKG 0.01114 0.43557 3.20513
73 3QP6 HL6 0.001097 0.43523 3.20513
74 3QP4 HL0 0.001094 0.43061 3.20513
75 1PX8 XYP 0.008253 0.42394 3.20513
76 2PP3 LGT 0.003075 0.41796 3.20513
77 1SC3 MLI 0.02823 0.41523 3.20513
78 1MZV AMP 0.006169 0.41473 3.20513
79 4C6F DOR 0.006235 0.41455 3.20513
80 4C6F NCD 0.006235 0.41455 3.20513
81 4C2G ALA ALA ALA ALA 0.008804 0.41284 3.20513
82 3L6R MLI 0.0255 0.41178 3.20513
83 3AYS CT3 0.007386 0.41153 3.20513
84 1TDF NAP 0.003421 0.41129 3.20513
85 3UER BTU 0.006999 0.40821 3.20513
86 3UER TUR 0.006999 0.40821 3.20513
87 4JP3 CIT 0.007076 0.40802 3.20513
88 4OJ8 2TQ 0.00195 0.40217 3.20513
89 3AVR OGA 0.04269 0.40183 3.20513
90 1SS4 GSH 0.0009889 0.52432 3.26797
91 1SS4 CIT 0.01603 0.43773 3.26797
92 3S9K CIT 0.004552 0.4898 3.38983
93 3UEC ALA ARG TPO LYS 0.007292 0.4381 3.42466
94 1C1L GAL BGC 0.004548 0.44799 3.64964
95 1ECM TSA 0.001981 0.44015 3.66972
96 1AUA BOG 0.00007387 0.50776 3.84615
97 4M51 BEZ 0.00095 0.48904 3.84615
98 4RJK PYR 0.001259 0.48293 3.84615
99 3ZPG 5GP 0.005485 0.45865 3.84615
100 4W6Z ETF 0.007449 0.45173 3.84615
101 3O2K DST 0.002692 0.43997 3.84615
102 2NVK NAP 0.003285 0.43621 3.84615
103 3E6J DR2 0.02184 0.43079 3.84615
104 4JCA CIT 0.02911 0.42763 3.84615
105 4OYA 1VE 0.003271 0.42371 3.84615
106 1GJW GLC 0.0147 0.42339 3.84615
107 2BO4 FLC 0.01621 0.42134 3.84615
108 4LWM MHO 0.02121 0.41861 3.84615
109 2HFK E4H 0.008388 0.4185 3.84615
110 3LTW HLZ 0.01491 0.4175 3.84615
111 1WNG SAH 0.001285 0.41555 3.84615
112 1GJW MAL 0.00607 0.41502 3.84615
113 3DER ALA LYS 0.001143 0.41348 3.84615
114 2XK9 XK9 0.000348 0.41281 3.84615
115 2DWU DGL 0.01008 0.41036 3.84615
116 1TV5 N8E 0.002428 0.40966 3.84615
117 3HMO STU 0.01409 0.4072 3.84615
118 4WVH ASP HIS ASP ALA HIS ALA 0.01208 0.40703 3.84615
119 3NOJ PYR 0.01835 0.40593 3.84615
120 3CH5 GDP 0.008232 0.4054 3.84615
121 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 0.005399 0.40459 3.84615
122 3K3G MMU 0.0205 0.40379 3.84615
123 1GWC GTX 0.02939 0.40212 3.84615
124 1SJD NPG 0.001259 0.40164 3.84615
125 4HA6 PXM 0.02744 0.40036 3.84615
126 1ULE GLA GAL NAG 0.0141 0.41134 4
127 4NPT 017 0.0109 0.40461 4.0404
128 1JGS SAL 0.01304 0.45546 4.34783
129 2JBH 5GP 0.005457 0.42161 4.44444
130 1WRA PC 0.001122 0.47722 4.48718
131 2ZWS PLM 0.01356 0.45449 4.48718
132 4USS GSH 0.001631 0.44942 4.48718
133 1Q6O LG6 0.0003617 0.44864 4.48718
134 4JWX 1N4 0.003145 0.43704 4.48718
135 2Q3M MLA 0.01737 0.43252 4.48718
136 2P69 PLP 0.005848 0.43067 4.48718
137 3CEV ARG 0.006184 0.41932 4.48718
138 2QJN KDG 0.002855 0.41921 4.48718
139 1XIU REA 0.001929 0.41719 4.48718
140 1I1Q TRP 0.007536 0.4157 4.48718
141 3KMZ EQO 0.0002713 0.41532 4.48718
142 1Z45 UPG 0.001944 0.41309 4.48718
143 4FFG LBS 0.02013 0.4119 4.48718
144 1UXG FUM 0.0006238 0.41031 4.48718
145 1UXG NAD 0.0006238 0.41031 4.48718
146 3I6B KDO 0.01326 0.40983 4.48718
147 4E28 9MZ 0.02663 0.4057 4.48718
148 2F2U M77 0.01107 0.40433 4.48718
149 1A59 CIT 0.04219 0.40109 4.48718
150 2OFE NAG 0.005982 0.43599 4.92958
151 2OFD NGA 0.01483 0.41761 4.92958
152 2FOI JPA 0.005797 0.41584 5
153 2XI7 XI7 0.0003 0.54867 5.12821
154 4CCN OGA 0.001372 0.46569 5.12821
155 3PUR 2HG 0.006593 0.44711 5.12821
156 4KCT PYR 0.001748 0.44244 5.12821
157 1Q11 TYE 0.003023 0.43778 5.12821
158 1T0S BML 0.02513 0.41779 5.12821
159 2XDQ MGX 0.03443 0.41689 5.12821
160 4DYO SD4 0.009036 0.41237 5.12821
161 2WUF KEM 0.0007654 0.41193 5.12821
162 3QV9 QV7 0.016 0.41098 5.12821
163 4L7I SAM 0.003048 0.40993 5.12821
164 2CKM AA7 0.0008486 0.40964 5.12821
165 4CCO OGA 0.01372 0.40917 5.12821
166 4O1M NAD 0.000377 0.40602 5.12821
167 2O4J VD4 0.0005843 0.40533 5.12821
168 5D63 FUC GAL GLA 0.01472 0.4034 5.12821
169 2XCG XCG 0.0003951 0.40019 5.12821
170 4QVH FLC 0.002117 0.50284 5.76923
171 1F1V DHY 0.0004234 0.46835 5.76923
172 9LDT OXM 0.005827 0.46579 5.76923
173 1QY1 PRZ 0.00003632 0.46411 5.76923
174 1Y9Q MED 0.002205 0.45612 5.76923
175 2VQ5 LDP 0.008246 0.44943 5.76923
176 3ZUY TCH 0.001139 0.44472 5.76923
177 1SQ5 PAU 0.002599 0.44064 5.76923
178 2OWZ CIT 0.01046 0.42469 5.76923
179 3OCZ SRA 0.00136 0.42274 5.76923
180 2JAR UMP 0.001199 0.42056 5.76923
181 1Y42 TYR 0.008578 0.41807 5.76923
182 1H16 PYR 0.02995 0.41394 5.76923
183 1SQ5 ADP 0.007584 0.40682 5.76923
184 1QS8 IVA VAL VAL STA ALA STA 0.003348 0.40469 5.76923
185 2Q8M FBP 0.005911 0.40311 5.76923
186 1ZZ7 S0H 0.01938 0.40261 5.76923
187 3JQ3 ADP 0.01233 0.4024 5.76923
188 4J7H TRH 0.003549 0.40024 5.76923
189 3PNA CMP 0.0005302 0.46424 5.84416
190 4M5P MLA 0.006583 0.46291 6.41026
191 1O9U ADZ 0.006845 0.45364 6.41026
192 2OHV NHL 0.001824 0.44166 6.41026
193 4NM5 ADP 0.0001867 0.43578 6.41026
194 1FP2 HMO 0.001113 0.43033 6.41026
195 1C3V PDC 0.00607 0.42994 6.41026
196 1YHM AHD 0.009335 0.42153 6.41026
197 3SHR CMP 0.005677 0.41621 6.41026
198 4AF5 CIT 0.01655 0.41539 6.41026
199 4U9W SER GLY ARG GLY LYS NH2 0.01766 0.4115 6.41026
200 4M5P FMN 0.002048 0.40492 6.41026
201 3HAZ FAD 0.0002061 0.40411 6.41026
202 3G6M CFF 0.04293 0.40277 6.41026
203 2PT9 2MH 0.0008798 0.4009 6.41026
204 4Q3F TLA 0.005162 0.43896 6.83761
205 2EB5 OXL 0.01049 0.42462 7.05128
206 1KDK DHT 0.0009289 0.4128 7.05128
207 3IPQ 965 0.0002263 0.40719 7.05128
208 3VPQ GSH 0.01963 0.40696 7.05128
209 4BG1 OGA 0.002227 0.40369 7.05128
210 4BG1 IVL 0.002227 0.40369 7.05128
211 1H8P PC 0.01805 0.43164 7.33945
212 1JH7 UVC 0.01882 0.40778 7.40741
213 2PUL ACP 0.0002417 0.4552 7.69231
214 2W8Q SIN 0.004325 0.44904 7.69231
215 1UOU CMU 0.002441 0.42183 7.69231
216 2HW1 FRU 0.009404 0.42139 7.69231
217 3BK2 U5P 0.003576 0.41979 7.69231
218 3W54 RNB 0.004719 0.41078 7.69231
219 3K3K A8S 0.002708 0.40431 7.69231
220 3MTW M3R 0.005607 0.40397 7.69231
221 2QCX PF1 0.0004801 0.47939 7.98479
222 2VDJ HSE 0.02028 0.42249 8.33333
223 3F81 STT 0.0403 0.41327 8.33333
224 4G4S LDZ 0.003536 0.40757 8.33333
225 1ZJ6 G3D 0.009513 0.4029 8.33333
226 3TKA CTN 0.01509 0.45717 8.97436
227 1QH9 LAC 0.002139 0.45674 8.97436
228 2ZJ5 ADP 0.004943 0.43395 8.97436
229 3MD0 GDP 0.011 0.40876 8.97436
230 2FYU FDN 0.002738 0.4078 8.97436
231 1B55 4IP 0.008457 0.40099 8.97436
232 1WHT BZS 0.001887 0.45926 9.15033
233 3WUD GLC GAL 0.04949 0.40283 9.55882
234 4COQ SAN 0.001162 0.46903 9.61539
235 1R6W 164 0.0003942 0.44723 9.61539
236 3U1T MLI 0.005978 0.44226 9.61539
237 2JC9 ADN 0.008844 0.4175 9.61539
238 1CKM GTP 0.01133 0.40822 9.61539
239 1FW1 GSH 0.008182 0.40154 9.61539
240 6FIV 3TL 0.007064 0.40401 9.73451
241 3SQG COM 0.007447 0.45999 10.2564
242 1NML CIT 0.01019 0.41481 10.2564
243 1C7S CBS 0.008786 0.40428 10.2564
244 1GU3 BGC BGC BGC BGC BGC 0.01335 0.4097 10.7383
245 1DXY COI 0.007032 0.45303 10.8974
246 1PEA ACM 0.01133 0.43521 10.8974
247 1QO0 BMD 0.006715 0.43365 10.8974
248 1KC7 PPR 0.01661 0.42082 10.8974
249 1WDA BAG 0.01121 0.40841 10.8974
250 1GPJ CIT 0.03226 0.40178 10.8974
251 2ET1 GLV 0.03592 0.40714 10.9453
252 2WA4 069 0.0002183 0.46796 11.5385
253 2Y0I AKG 0.001422 0.45825 11.5385
254 4B7E OGA 0.001438 0.45802 11.5385
255 1H2K OGA 0.002148 0.45666 11.5385
256 1H2M OGA 0.002294 0.45533 11.5385
257 3P3N AKG 0.005294 0.43845 11.5385
258 1FIQ FAD 0.0008015 0.4021 11.5385
259 1EB9 HBA 0.002469 0.42618 12.1795
260 1NP0 NGT 0.02055 0.41098 12.1795
261 1L8N GCW 0.001336 0.40414 12.1795
262 4JH6 FCN 0.0369 0.40073 12.3188
263 1YBH P22 0.002296 0.43229 13.4615
264 2DTJ THR 0.005654 0.41628 13.4615
265 4O8A 2OP 0.03693 0.41528 14.1026
266 3IHB TRS 0.0001474 0.54756 14.7436
267 3ZGE ASP 0.00179 0.4753 14.7436
268 3IHB GLU 0.004218 0.44956 14.7436
269 1F5F DHT 0.001337 0.42301 14.7436
270 3DG6 MUC 0.005221 0.40909 14.7436
271 2YIV NBN 0.006117 0.44178 15.3846
272 2NCD ADP 0.009188 0.42184 16.0256
273 1P72 THM 0.008791 0.41761 16.0256
274 2XG5 EC5 0.01842 0.41344 16.0256
275 1NHZ 486 0.001177 0.40941 19.2308
276 3S6T OAN 0.002963 0.41038 21.7949
277 1TFZ 869 0.00345 0.40066 22.4359
278 3IB9 BTN 0.006788 0.4429 25
279 4G28 0W8 0.004291 0.42601 26.4706
Feedback