Receptor
PDB id Resolution Class Description Source Keywords
2YFZ 1.8 Å NON-ENZYME: BINDING CBM62 FROM CLOSTRIDIUM THERMOCELLUM XYL5A CLOSTRIDIUM THERMOCELLUM SUGAR BINDING PROTEIN
Ref.: A NOVEL, NONCATALYTIC CARBOHYDRATE-BINDING MODULE D SPECIFICITY FOR GALACTOSE-CONTAINING POLYSACCHARIDE CALCIUM-MEDIATED OLIGOMERIZATION. J.BIOL.CHEM. V. 286 22499 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BGC BGC BGC XYS GAL B:1;
 Valid;
 none;
 Kd = 0.565 uM
n/a n/a
CA A:1141;
 Part of Protein;
 none;
 submit data
40.078 Ca [Ca+2...
GOL A:1142;
 Invalid;
 none;
 submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2YFZ 1.8 Å NON-ENZYME: BINDING CBM62 FROM CLOSTRIDIUM THERMOCELLUM XYL5A CLOSTRIDIUM THERMOCELLUM SUGAR BINDING PROTEIN
Ref.: A NOVEL, NONCATALYTIC CARBOHYDRATE-BINDING MODULE D SPECIFICITY FOR GALACTOSE-CONTAINING POLYSACCHARIDE CALCIUM-MEDIATED OLIGOMERIZATION. J.BIOL.CHEM. V. 286 22499 2011
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 2YFZ Kd = 0.565 uM BGC BGC BGC XYS GAL n/a n/a
2 2YB7 - BMA GLA n/a n/a
3 2YG0 Kd = 3.44 mM BMA GLA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BGC BGC BGC XYS GAL; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BGC BGC BGC XYS GAL; Similar ligands found: 1
No: Ligand Similarity coefficient
1 BGC BGC BGC XYS GAL 1.0000
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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