Receptor
PDB id Resolution Class Description Source Keywords
2XD3 2 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURE OF MALX FROM STREPTOCOCCUS PNEUMONIAE WITH MALTOPENTAOSE. STREPTOCOCCUS PNEUMONIAE SOLUTE-BINDING PROTEIN SUGAR BINDING PROTEIN VIRULENCE ALGLUCAN SUGAR TRANSPORT MEMBRANE PROTEIN
Ref.: THE MOLECULAR BASIS OF GLYCOGEN BREAKDOWN AND TRANS STREPTOCOCCUS PNEUMONIAE. MOL.MICROBIOL. V. 77 183 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLC GLC GLC GLC GLC GLC GLC B:1;
 Valid;
 none;
 Ka = 83000 M^-1
1134.99 n/a OCC1O...
SO4 A:1424;
A:1425;
 Invalid;
Invalid;
 none;
none;
 submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2XD3 2 Å NON-ENZYME: BINDING THE CRYSTAL STRUCTURE OF MALX FROM STREPTOCOCCUS PNEUMONIAE WITH MALTOPENTAOSE. STREPTOCOCCUS PNEUMONIAE SOLUTE-BINDING PROTEIN SUGAR BINDING PROTEIN VIRULENCE ALGLUCAN SUGAR TRANSPORT MEMBRANE PROTEIN
Ref.: THE MOLECULAR BASIS OF GLYCOGEN BREAKDOWN AND TRANS STREPTOCOCCUS PNEUMONIAE. MOL.MICROBIOL. V. 77 183 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2XD3 Ka = 83000 M^-1 GLC GLC GLC GLC GLC GLC GLC n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2XD3 Ka = 83000 M^-1 GLC GLC GLC GLC GLC GLC GLC n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 2XD3 Ka = 83000 M^-1 GLC GLC GLC GLC GLC GLC GLC n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC GLC; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 GLC GLC GLC GLC GLC GLC GLC 1 1
2 GLC GLC GLC GLC GLC GLC 1 1
3 GLC GLC GLC GLC GLC GLC GLC GLC 1 1
4 GLC GLC GLC GLC 0.510638 0.939394
Similar Ligands (3D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC GLC; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2XD3; Ligand: GLC GLC GLC GLC GLC GLC GLC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2xd3.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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