Receptor
PDB id Resolution Class Description Source Keywords
2WC6 1.9 Å NON-ENZYME: BINDING STRUCTURE OF BMORI GOBP2 (GENERAL ODORANT BINDING PROTEIN 2) WITH BOMBYKOL AND WATER TO ARG 110 BOMBYX MORI ODORANT BINDING PROTEIN TRANSPORT PROTEIN OLFACTION TRANSPORT DISULFIDE BOND INSECT PHEREMONE SENSORY TRANSDUCTION
Ref.: CHARACTERISATION OF BOMBYX MORI ODORANT-BINDING PROTEINS REVEALS THAT A GENERAL ODORANT-BINDING PROTEIN DISCRIMINATES BETWEEN SEX PHEROMONE COMPONENTS. J.MOL.BIOL. V. 389 529 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BOM A:1143;
Valid;
none;
submit data
238.409 C16 H30 O CCCC=...
MG A:1142;
Invalid;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2WCJ 1.4 Å NON-ENZYME: BINDING STRUCTURE OF BMORI GOBP2 (GENERAL ODORANT BINDING PROTEIN 2) WITH (10E,12Z)-TETRADECADIEN-1-OL BOMBYX MORI ODORANT BINDING PROTEIN TRANSPORT PROTEIN OLFACTION TRANSPORT DISULFIDE BOND INSECT PHEREMONE SENSORY TRANSDUCTION
Ref.: CHARACTERISATION OF BOMBYX MORI ODORANT-BINDING PROTEINS REVEALS THAT A GENERAL ODORANT-BINDING PROTEIN DISCRIMINATES BETWEEN SEX PHEROMONE COMPONENTS. J.MOL.BIOL. V. 389 529 2009
Members (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 2WC5 - BOM C16 H30 O CCCC=C/C=C....
2 2WCH - B7M C16 H28 O CCCC=C/C=C....
3 2WC6 - BOM C16 H30 O CCCC=C/C=C....
4 2WCM - B9M C16 H28 O CCCC#CC=CC....
5 2WCJ - M21 C14 H26 O CC=C/C=C/C....
6 2WCL - B8M C16 H30 O CCCCCC=C/C....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 2WC5 - BOM C16 H30 O CCCC=C/C=C....
2 2WCH - B7M C16 H28 O CCCC=C/C=C....
3 2WC6 - BOM C16 H30 O CCCC=C/C=C....
4 2WCM - B9M C16 H28 O CCCC#CC=CC....
5 2WCJ - M21 C14 H26 O CC=C/C=C/C....
6 2WCL - B8M C16 H30 O CCCCCC=C/C....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 1DQE - BOM C16 H30 O CCCC=C/C=C....
2 2P70 - PRZ C9 H14 N2 O CC(C)Cc1c(....
3 2P71 - IHD C16 H33 I CCCCCCCCCC....
4 4INW - 1EY C16 H28 O CC/C=CC=C/....
5 4INX - 1EX C16 H30 O CC/C=CC=C/....
6 2WC5 - BOM C16 H30 O CCCC=C/C=C....
7 2WCH - B7M C16 H28 O CCCC=C/C=C....
8 2WC6 - BOM C16 H30 O CCCC=C/C=C....
9 2WCM - B9M C16 H28 O CCCC#CC=CC....
10 2WCJ - M21 C14 H26 O CC=C/C=C/C....
11 2WCL - B8M C16 H30 O CCCCCC=C/C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BOM; Similar ligands found: 13
No: Ligand ECFP6 Tc MDL keys Tc
1 BOM 1 1
2 B8M 0.794118 0.913043
3 1EX 0.722222 0.952381
4 M21 0.648649 0.904762
5 ODD 0.466667 0.692308
6 DE1 0.441176 0.826087
7 PL3 0.441176 0.826087
8 O8N 0.441176 0.826087
9 OC9 0.441176 0.826087
10 1DO 0.441176 0.826087
11 F09 0.441176 0.826087
12 B9M 0.4375 0.954545
13 HE4 0.411765 0.826087
Similar Ligands (3D)
Ligand no: 1; Ligand: BOM; Similar ligands found: 2
No: Ligand Similarity coefficient
1 MYR 0.8611
2 OLA 0.8571
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2WCJ; Ligand: M21; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2wcj.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback