Receptor
PDB id Resolution Class Description Source Keywords
2VL1 2.15 Å EC: 3.5.1.6 CRYSTAL STRUCTURE OF BETA-ALANINE SYNTHASE FROM SACCHAROMYCE IN COMPLEX WITH A GLY-GLY PEPTIDE SACCHAROMYCES KLUYVERI HYDROLASE DI-ZINC CENTER AMIDOHYDROLASE ALPHA AND BETA PRCOMPLEX WITH GLYCINE-GLYCINE
Ref.: A RECRUITED PROTEASE IS INVOLVED IN CATABOLISM OF PYRIMIDINES. J.MOL.BIOL. V. 379 243 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLY GLY A:601;
B:601;
B:703;
C:601;
C:703;
C:805;
D:601;
D:703;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
Ki = 45 mM
132.119 n/a O=C([...
ZN A:500;
A:501;
B:500;
C:500;
D:500;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
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65.409 Zn [Zn+2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2VL1 2.15 Å EC: 3.5.1.6 CRYSTAL STRUCTURE OF BETA-ALANINE SYNTHASE FROM SACCHAROMYCE IN COMPLEX WITH A GLY-GLY PEPTIDE SACCHAROMYCES KLUYVERI HYDROLASE DI-ZINC CENTER AMIDOHYDROLASE ALPHA AND BETA PRCOMPLEX WITH GLYCINE-GLYCINE
Ref.: A RECRUITED PROTEASE IS INVOLVED IN CATABOLISM OF PYRIMIDINES. J.MOL.BIOL. V. 379 243 2008
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2V8G - BAL C3 H7 N O2 C(CN)C(=O)....
2 2VL1 Ki = 45 mM GLY GLY n/a n/a
3 2V8H - URP C4 H8 N2 O3 C(CNC(=O)N....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2V8G - BAL C3 H7 N O2 C(CN)C(=O)....
2 2VL1 Ki = 45 mM GLY GLY n/a n/a
3 2V8H - URP C4 H8 N2 O3 C(CNC(=O)N....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2V8G - BAL C3 H7 N O2 C(CN)C(=O)....
2 2VL1 Ki = 45 mM GLY GLY n/a n/a
3 2V8H - URP C4 H8 N2 O3 C(CNC(=O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY GLY; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY GLY 1 1
2 GLY GLY GLY 0.416667 0.935484
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2VL1; Ligand: GLY GLY; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 2vl1.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4PXD 1AL 42.615
2 4PXE GLV 45.3488
Pocket No.: 2; Query (leader) PDB : 2VL1; Ligand: GLY GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2vl1.bio2) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2VL1; Ligand: GLY GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2vl1.bio2) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2VL1; Ligand: GLY GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2vl1.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2VL1; Ligand: GLY GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2vl1.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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