-->
Receptor
PDB id Resolution Class Description Source Keywords
2VHJ 1.8 Å EC: 3.-.-.- P4 PROTEIN FROM BACTERIOPHAGE PHI12 S252A MUTANT IN COMPLEX WITH ADP PSEUDOMONAS PHAGE PHI12 NON- HYDROLYSABLE ATP ANALOGUE HYDROLASE VIRUS DSRNA MOLECULAR MOTOR PACKAGING ATPASE HEXAMERIC HELICASE
Ref.: STRUCTURAL BASIS OF MECHANOCHEMICAL COUPLING IN A HEXAMERIC MOLECULAR MOTOR. J.BIOL.CHEM. V. 283 3607 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP A:1301;
B:1301;
C:1301;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2VHJ 1.8 Å EC: 3.-.-.- P4 PROTEIN FROM BACTERIOPHAGE PHI12 S252A MUTANT IN COMPLEX WITH ADP PSEUDOMONAS PHAGE PHI12 NON- HYDROLYSABLE ATP ANALOGUE HYDROLASE VIRUS DSRNA MOLECULAR MOTOR PACKAGING ATPASE HEXAMERIC HELICASE
Ref.: STRUCTURAL BASIS OF MECHANOCHEMICAL COUPLING IN A HEXAMERIC MOLECULAR MOTOR. J.BIOL.CHEM. V. 283 3607 2008
Members (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 1W4B - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 1W48 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
3 2VHC - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 2VHQ - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
5 1W44 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
6 1W4A - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
7 4BLR - UTP C9 H15 N2 O15 P3 C1=CN(C(=O....
8 1W47 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 1W49 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
10 4BLT - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
11 2VHJ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1W4B - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 1W48 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
3 2VHC - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 2VHQ - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
5 1W44 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
6 1W4A - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
7 4BLR - UTP C9 H15 N2 O15 P3 C1=CN(C(=O....
8 1W47 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 1W49 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
10 4BLT - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
11 2VHJ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 1W4B - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 1W48 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
3 2VHC - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 2VHQ - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
5 1W44 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
6 1W4A - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
7 4BLR - UTP C9 H15 N2 O15 P3 C1=CN(C(=O....
8 1W47 - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
9 1W49 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
10 4BLT - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
11 2VHJ - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: 166
This union binding pocket(no: 1) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 2BIF ANP 1.51057
2 2BIF SIN 1.51057
3 1D8C GLV 1.81269
4 5KSZ GCP 1.81269
5 5WXU FLC 1.81269
6 2WHX ADP 1.81269
7 1BG2 ADP 1.84615
8 3F8D FAD 1.85759
9 5KBF CMP 1.99336
10 4U00 ADP 2.04918
11 1SQL GUN 2.05479
12 1XMV ADP 2.1148
13 3E70 GDP 2.13415
14 2XYA 7L4 2.1978
15 5NM7 GLY 2.25564
16 1SQ5 ADP 2.27273
17 1YJQ NAP 2.31023
18 2NCD ADP 2.41692
19 4R43 GDP 2.41692
20 4IHQ ADP 2.41692
21 1PVS 7HP 2.48227
22 2F9W PAU 2.58303
23 3ESS 18N 2.6087
24 4YMJ 4EJ 2.63158
25 5L3V GDP 2.67559
26 3KCC CMP 2.69231
27 3WGT QSC 2.71903
28 2CDN ADP 2.98507
29 1RRC ADP 2.99003
30 1CLU DBG 3.01205
31 2OG2 MLI 3.02115
32 6GAR FAD 3.02115
33 1P7T PYR 3.02115
34 6GAS FAD 3.02115
35 3IO3 ADP 3.02115
36 5KSP GDP 3.15789
37 2ZE7 DST 3.16206
38 2I6U NVA 3.25733
39 3AQ4 GDP 3.26087
40 3B9Q MLI 3.31126
41 3ITJ CIT 3.32326
42 1T0S BML 3.32326
43 4FRZ ADP 3.32326
44 3BJE R1P 3.32326
45 5HWK BEZ 3.33333
46 2RI1 GLP 3.40426
47 3CNL GNP 3.43511
48 1Z0A GDP 3.44828
49 4BFW ZVW 3.45912
50 4YLG GDP 3.46821
51 5XKT GNP 3.5
52 1UJ2 ADP 3.57143
53 1UJ2 C5P 3.57143
54 6H5E ANP 3.58566
55 3UN3 G16 3.62538
56 4DCT GDP 3.72807
57 2AWN ADP 3.92749
58 3I6I NDP 3.92749
59 1M32 PLP 3.92749
60 4NE2 SH2 4.22961
61 4NE2 ADP 4.22961
62 2ZR9 DTP 4.22961
63 6GN6 MAL 4.22961
64 4AT0 FAD 4.22961
65 2C6Q NDP 4.22961
66 3QDK QDK 4.22961
67 2W58 ADP 4.45545
68 5ZXD ATP 4.53172
69 2BHZ MAL 4.53172
70 4R2I ANP 4.7619
71 2YOH WMJ 4.7619
72 4URG C2E 4.79042
73 4PPF FLC 4.83384
74 4UP4 NDG 4.83384
75 5TWB FAD 4.83384
76 5TSH ADP 4.83384
77 2Y65 ADP 4.83384
78 4UP4 GAL NAG 4.83384
79 4E03 ADP 4.85437
80 3B8I OXL 4.87805
81 2R0H CTO 4.87805
82 1Z4O GL1 4.97738
83 1MFA GLA MMA ABE 5
84 4QDI ATP 5.13595
85 3SHR CMP 5.13595
86 3OF1 CMP 5.28455
87 3W5J GDP 5.39216
88 5TB5 GDP 5.40541
89 1Q19 SSC 5.43807
90 1V6A TRE 5.43807
91 2VVG ADP 5.43807
92 1GXU 2HP 5.49451
93 5E5U MLI 5.52764
94 5UIV ADP 5.72687
95 1GQY ACP 5.74018
96 2HF9 GSP 5.75221
97 1VHT BA3 5.9633
98 4IDN GNP 6.0423
99 3A4M ADP 6.15385
100 5URY PAM 6.16438
101 1S8F GDP 6.21469
102 1OIV GDP 6.28272
103 1ZJ6 G3D 6.41711
104 1M7G ADX 6.63507
105 1M7G ADP 6.63507
106 1YZG GDP 6.70391
107 2CBZ ATP 6.75105
108 4TM3 FAD 7.25076
109 4Y4V DAL 7.25076
110 2PEZ DAT 7.26257
111 2PEZ GGZ 7.26257
112 1XP8 AGS 7.55287
113 1TU3 GNP 7.59494
114 4QM7 GTP 7.60234
115 3PQC GDP 7.69231
116 1JJ7 ADP 7.69231
117 5NC9 8SZ 7.69231
118 1FZQ GDP 7.73481
119 2WZF BGC 7.85498
120 1T5C ADP 7.85498
121 1JI0 ATP 7.91667
122 4OKD GLC GLC GLC 8.1571
123 6EV2 BGC 8.29493
124 4WOP CTP 8.44444
125 1F6B GDP 9.09091
126 2OFW ADX 9.13461
127 1XX6 ADP 9.42408
128 4A05 CBI 9.66767
129 2GKS ADP 9.66767
130 1I7A FLC 9.90991
131 3CV2 OXL 9.96979
132 1N62 FAD 10.241
133 1YRO GDU 10.5691
134 5ZZ6 NAD 10.5769
135 5AYV KPL 10.6796
136 1M2O GNP 10.8761
137 4LYA ATP 10.8761
138 1T8U UAP SGN IDS SGN 11.0294
139 3ZIA ADP 11.1111
140 1GOJ ADP 11.1782
141 2QTV GNP 11.3772
142 4CVN ADP 11.5183
143 4K81 GTP 11.6279
144 2X77 GDP 11.6402
145 2KIN ADP 12
146 4C12 ADP 12.0846
147 1NC4 DOF 12.093
148 6BSX GDP 12.3596
149 4YDS ATP 12.7193
150 1D1Q 4NP 13.0435
151 2QG6 NMN 13.0653
152 3UIE ANP 14
153 4J6W C 14.6341
154 4J6W CDP 14.6341
155 2V7Q ADP 15.1515
156 2V7Q ATP 15.1515
157 5C8W PCG 15.3846
158 3TMK T5A 16.2037
159 1R0X ATP 16.4336
160 1JJV ATP 17.4757
161 3IIJ ADP 18.8889
162 2PZE ATP 19.214
163 3N5C GDP 19.7531
164 4BQS ADP 20.4545
165 4BQS K2Q 20.4545
166 2ZFZ ARG 36.7089
Pocket No.: 2; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 5KUT GDP 3.7037
2 4URS C2E 4.25532
3 2VOH CIT 4.4586
4 5O74 GDP 11.1111
5 3Q72 GNP 11.4458
6 1FWV SGA MAG FUC 11.9403
7 4X9D U5P 14.0845
8 4PNO U5P 16.6667
Pocket No.: 4; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: 47
This union binding pocket(no: 5) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 5TIV A3P 2.37154
2 3KLL MAL 2.71903
3 2F6D ACR 2.71903
4 1K6M AGS 2.71903
5 2RGX AP5 2.91262
6 2Z48 NGA 3.02115
7 1LVK MNT BEF 3.02115
8 2Y8E GNP 3.35196
9 1YZQ GNP 3.52941
10 5G41 AP5 3.58744
11 2VTD LKM 3.62538
12 3VMF GTP 3.62538
13 1YKJ FAD 4.22961
14 1YKJ PHB 4.22961
15 5WX3 COA 4.22961
16 4B63 ORN 4.22961
17 4B63 NAP 4.22961
18 4B63 FAD 4.22961
19 1R2Q GNP 4.70588
20 3MJH GTP 4.7619
21 4WZA ACP 5.43807
22 4WZA ADP 5.43807
23 1V59 FAD 5.43807
24 4XGU ADP 5.74018
25 5SZH GNP 6.53595
26 1BRW URA 6.64653
27 1GTE FAD 6.64653
28 2FFQ GSP 7.01754
29 4AVV CD 8.33333
30 3S5W NAP 8.76133
31 2FKA BEF 9.30233
32 5MZY 8EZ 10.566
33 1G5N UAP SGN IDS SGN 10.6918
34 3FGZ BEF 10.9375
35 3ZIA ATP 11.1111
36 5BYK OAQ 11.583
37 5BYK A3P 11.583
38 1Z0F GDP 11.7318
39 5LB3 ADP 11.7825
40 3WXM GTP 12.0846
41 6BSX E7S 12.3596
42 2PNZ 5GP 12.6888
43 5LEF GTP 13.6364
44 1MR3 G3D 14.3646
45 2VB6 ADP BEF 18.7919
46 1NRJ GTP 24.3119
47 5O2T GSP 26.738
Pocket No.: 6; Query (leader) PDB : 2VHJ; Ligand: ADP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2vhj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback