Receptor
PDB id Resolution Class Description Source Keywords
2VH9 2.1 Å EC: 3.2.1.151 CRYSTAL STRUCTURE OF NXG1-DELTAYNIIG IN COMPLEX WITH XLLG, A XYLOGLUCAN DERIVED OLIGOSACCHARIDE TROPAEOLUM MAJUS HYDROLASE GLYCOSIDASE FAMILY GH16 TROPAEOLUM MAJUS XYLOGLXLLG OLIGOSACCHARIDE LOOP MUTANT NXG1-YNIIG SUBSTRATE COMGLYCOSIDE HYDROLASE
Ref.: ANALYSIS OF NASTURTIUM TMNXG1 COMPLEXES BY CRYSTALL AND MOLECULAR DYNAMICS PROVIDES DETAILED INSIGHT IN SUBSTRATE RECOGNITION BY FAMILY GH16 XYLOGLUCAN ENDO-TRANSGLYCOSYLASES AND ENDO-HYDROLASES. PROTEINS V. 75 820 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:302;
B:301;
 Invalid;
Invalid;
 none;
none;
 submit data
92.094 C3 H8 O3 C(C(C...
ZN A:301;
B:302;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
65.409 Zn [Zn+2...
BGC BGC BGC XYS GAL BGC XYS GAL XYS C:1;
F:1;
 Valid;
Valid;
 none;
none;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2VH9 2.1 Å EC: 3.2.1.151 CRYSTAL STRUCTURE OF NXG1-DELTAYNIIG IN COMPLEX WITH XLLG, A XYLOGLUCAN DERIVED OLIGOSACCHARIDE TROPAEOLUM MAJUS HYDROLASE GLYCOSIDASE FAMILY GH16 TROPAEOLUM MAJUS XYLOGLXLLG OLIGOSACCHARIDE LOOP MUTANT NXG1-YNIIG SUBSTRATE COMGLYCOSIDE HYDROLASE
Ref.: ANALYSIS OF NASTURTIUM TMNXG1 COMPLEXES BY CRYSTALL AND MOLECULAR DYNAMICS PROVIDES DETAILED INSIGHT IN SUBSTRATE RECOGNITION BY FAMILY GH16 XYLOGLUCAN ENDO-TRANSGLYCOSYLASES AND ENDO-HYDROLASES. PROTEINS V. 75 820 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2VH9 - BGC BGC BGC XYS GAL BGC XYS GAL XYS n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2VH9 - BGC BGC BGC XYS GAL BGC XYS GAL XYS n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2VH9 - BGC BGC BGC XYS GAL BGC XYS GAL XYS n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BGC BGC BGC XYS GAL BGC XYS GAL XYS; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BGC BGC BGC XYS GAL BGC XYS GAL XYS; Similar ligands found: 1
No: Ligand Similarity coefficient
1 BGC BGC BGC XYS GAL BGC XYS GAL XYS 1.0000
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2VH9; Ligand: BGC BGC BGC XYS GAL BGC XYS GAL XYS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2vh9.bio2) has 20 residues
No: Leader PDB Ligand Sequence Similarity
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