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Showing PDB: 2V6A
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Receptor
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Ligand
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50%
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Structure Biounit | Ligand Information
PDB :
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Class :
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Receptor
PDB id
Resolution
Class
Description
Source
Keywords
2V6A
1.5 Å
EC:
4.1.1.39
CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, G344S
CHLAMYDOMONAS REINHARDTII
LARGE SUBUNIT LOOP 6 MUTATION CO2/O2 SPECIFICITY CARBON DIOXIDE FIXATION PHOTOSYNTHESIS TRANSIT PEPTIDE PHOTORESPIRATION METAL-BINDING HYDROXYLATION OXIDOREDUCTASE METHYLATION CHLOROPLAST CALVIN CYCLE MONOOXYGENASE LYASE RUBISCO PLASTID MAGNESIUM ACETYLATION
Ref.:
STRUCTURAL ANALYSIS OF ALTERED LARGE-SUBUNIT LOOP-6-CARBOXY-TERMINUS INTERACTIONS THAT INFLUENCE CATALYTIC EFFICIENCY AND CO2-O2 SPECIFICITY OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE OXYGENASE BIOCHEMISTRY V. 46 11080 2007
Ligand
Ligand
Chain:Residue
Validity
Ligand Warnings
Binding Data
NGL Viewer
Molecular Weight (Da)
Formula
SMILES
CAP
A:1477;
B:1477;
C:1477;
D:1477;
E:1477;
F:1477;
G:1477;
H:1477;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
356.115
C6 H14 O13 P2
C([C@...
EDO
A:1478;
A:1479;
A:1480;
A:1481;
A:1482;
A:1483;
A:1484;
B:1478;
B:1479;
B:1480;
B:1481;
B:1482;
C:1478;
C:1479;
C:1480;
C:1481;
C:1482;
C:1483;
D:1478;
D:1479;
D:1480;
D:1481;
D:1482;
E:1478;
E:1479;
E:1480;
E:1481;
F:1478;
F:1479;
F:1480;
F:1481;
F:1482;
F:1483;
G:1478;
G:1479;
G:1480;
G:1481;
G:1482;
H:1478;
H:1479;
H:1480;
H:1481;
H:1482;
I:1141;
I:1142;
J:1141;
J:1142;
K:1141;
K:1142;
L:1141;
L:1142;
M:1141;
M:1142;
N:1141;
N:1142;
O:1141;
O:1142;
P:1141;
P:1142;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068
C2 H6 O2
C(CO)...
MG
A:1476;
B:1476;
C:1476;
D:1476;
E:1476;
F:1476;
G:1476;
H:1476;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
24.305
Mg
[Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id
Resolution
Class
Description
Source
Keywords
2V6A
1.5 Å
EC:
4.1.1.39
CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, G344S
CHLAMYDOMONAS REINHARDTII
LARGE SUBUNIT LOOP 6 MUTATION CO2/O2 SPECIFICITY CARBON DIOXIDE FIXATION PHOTOSYNTHESIS TRANSIT PEPTIDE PHOTORESPIRATION METAL-BINDING HYDROXYLATION OXIDOREDUCTASE METHYLATION CHLOROPLAST CALVIN CYCLE MONOOXYGENASE LYASE RUBISCO PLASTID MAGNESIUM ACETYLATION
Ref.:
STRUCTURAL ANALYSIS OF ALTERED LARGE-SUBUNIT LOOP-6-CARBOXY-TERMINUS INTERACTIONS THAT INFLUENCE CATALYTIC EFFICIENCY AND CO2-O2 SPECIFICITY OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE OXYGENASE BIOCHEMISTRY V. 46 11080 2007
Members (1)
No:
PDB id
Binding Data
Representative ligand
Formula
Smiles
The
Class
containing this family consists of a total of
19
families.
1
2V6A
-
CAP
C6 H14 O13 P2
C([C@H]([C....
70% Homology Family (1)
No:
PDB id
Binding Data
Representative ligand
Formula
Smiles
The
Class
containing this family consists of a total of
16
families.
1
2V6A
-
CAP
C6 H14 O13 P2
C([C@H]([C....
50% Homology Family (1)
No:
PDB id
Binding Data
Representative ligand
Formula
Smiles
The
Class
containing this family consists of a total of
14
families.
1
2V6A
-
CAP
C6 H14 O13 P2
C([C@H]([C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CAP; Similar ligands found: 8
No:
Ligand
ECFP6 Tc
MDL keys Tc
1
CAP
1
1
2
XDP
0.543478
0.945946
3
DER
0.434783
0.918919
4
DEZ
0.434783
0.918919
5
4TP
0.416667
0.772727
6
PA5
0.408163
0.918919
7
R10
0.408163
0.918919
8
HG3
0.404762
0.810811
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2V6A; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2v6a.bio1) has
22 residues
No:
Leader PDB
Ligand
Sequence Similarity
APoc FAQ
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