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Receptor
PDB id Resolution Class Description Source Keywords
2RCN 2.25 Å EC: 3.6.1.- CRYSTAL STRUCTURE OF THE RIBOSOMAL INTERACTING GTPASE YJEQ F ENTEROBACTERIAL SPECIES SALMONELLA TYPHIMURIUM. SALMONELLA TYPHIMURIUM YJEQ GTPASE CIRCULARLY PERMUTED GTP-BINDING HYDROLASE NUCLEOTIDE-BINDING
Ref.: STRUCTURE OF THE RIBOSOMAL INTERACTING GTPASE YJEQ ENTEROBACTERIAL SPECIES SALMONELLA TYPHIMURIUM. ACTA CRYSTALLOGR.,SECT.F V. 63 922 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:600;
Valid;
none;
Kd = 1 uM
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:360;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
ZN A:359;
Part of Protein;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2RCN 2.25 Å EC: 3.6.1.- CRYSTAL STRUCTURE OF THE RIBOSOMAL INTERACTING GTPASE YJEQ F ENTEROBACTERIAL SPECIES SALMONELLA TYPHIMURIUM. SALMONELLA TYPHIMURIUM YJEQ GTPASE CIRCULARLY PERMUTED GTP-BINDING HYDROLASE NUCLEOTIDE-BINDING
Ref.: STRUCTURE OF THE RIBOSOMAL INTERACTING GTPASE YJEQ ENTEROBACTERIAL SPECIES SALMONELLA TYPHIMURIUM. ACTA CRYSTALLOGR.,SECT.F V. 63 922 2007
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 28 families.
1 2RCN Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 26 families.
1 2RCN Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 24 families.
1 2RCN Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2RCN; Ligand: GDP; Similar sites found with APoc: 720
This union binding pocket(no: 1) in the query (biounit: 2rcn.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 2O66 FLC None
2 6CA4 MLI None
3 1Z08 GNP 1.17647
4 5WRI A3P 1.25
5 5WRJ A3P 1.32013
6 1G7S GDP 1.39665
7 5FHD ADP ALF 1.39665
8 5FTB ANP 1.39665
9 2XTZ GSP 1.41243
10 1G6O ADP 1.51515
11 3A4M ADP 1.53846
12 1PVN MZP 1.59574
13 1Z0F GDP 1.67598
14 5Z69 AGS 1.67598
15 5M7P ADP 1.67598
16 5ZYN FAD 1.67598
17 3ITJ CIT 1.77515
18 3KC1 2T6 1.78042
19 1ZUI SKM 1.78571
20 1NST A3P 1.84615
21 4R2I ANP 1.90476
22 4B47 GDP 1.95531
23 4AG5 ADP 1.95531
24 4NCN GTP 1.95531
25 3HU3 AGS 1.95531
26 5I34 GDP 1.95531
27 4IEE AGS 1.95531
28 5VGR GDP 1.95531
29 1D6Z HY1 1.95531
30 1XMV ADP 1.96629
31 3ZFD ANP 1.9943
32 1AQU A3P 2.0202
33 4TMZ GSP 2.02899
34 3DC4 ADP 2.03488
35 1J99 AND 2.04778
36 1E2K TMC 2.1148
37 1TQ4 GDP 2.23464
38 1IWE IMP 2.23464
39 2BIF ANP 2.23464
40 2GKS ADP 2.23464
41 2BIF SIN 2.23464
42 1NY5 ADP 2.23464
43 2CE7 ADP 2.23464
44 5TVJ COA 2.23464
45 4Z87 5GP 2.23464
46 5TVJ 7LF 2.23464
47 4AUT FAD 2.23464
48 2B8T THM 2.24215
49 4U5X GNP 2.24719
50 3Q9L ATP 2.30769
51 3TMK T5A 2.31481
52 1EK0 GNP 2.35294
53 2JJK R15 2.36686
54 5AHO TLA 2.38095
55 3TK1 GDP 2.42424
56 4GBM A3P 2.47678
57 5MEX SZZ 2.48447
58 5MEX PAP 2.48447
59 3WY9 GDP 2.51397
60 3WYA GDP 2.51397
61 1SKQ GDP 2.51397
62 3VMF GTP 2.51397
63 5WC2 ADP 2.51397
64 4ZG4 VO4 ADP 2.51397
65 4PFO ADP 2.51397
66 5LB3 ADP 2.51397
67 3EZ2 ADP 2.51397
68 1XKV ATP 2.51397
69 2J5V PCA 2.51397
70 1SVK ALF GDP 2.54958
71 1T8U UAP SGN IDS SGN 2.57353
72 1T8U A3P 2.57353
73 1T5C ADP 2.5788
74 4R98 GNH 2.58303
75 3BFV ADP 2.58303
76 2CJW GDP 2.60417
77 2WIC GNP 2.62172
78 5UIV ADP 2.64317
79 2X77 GDP 2.6455
80 5H68 AGS 2.64706
81 1RRC ADP 2.65781
82 5L3V GDP 2.67559
83 4NON GDP 2.69231
84 4RZ3 ADP 2.71186
85 3QVV A3P 2.71186
86 3QVV 3QV 2.71186
87 1Y3A GDP 2.73556
88 4PX9 ADP 2.73973
89 2ZE7 AMP 2.7668
90 2ZE7 DST 2.7668
91 2OM2 GDP 2.76923
92 3ZQ6 ADP ALF 2.77778
93 1KK1 GNP 2.7933
94 6A20 ADP 2.7933
95 4OHY ANP 2.7933
96 1IHU AF3 2.7933
97 1IHU ADP 2.7933
98 2D2F ADP 2.8
99 1M7G AV2 2.8436
100 1M7G ADP 2.8436
101 1M7G ADX 2.8436
102 1BH2 GSP 2.85714
103 5EE5 GTP 2.92398
104 2W58 ADP 2.9703
105 2ZW5 COA 2.99003
106 1U0J ADP 2.99625
107 4QOS ADP 3.01887
108 2OZE AGS 3.02013
109 1R4A GNP 3.0303
110 3T1O GDP 3.0303
111 2VBQ BSJ 3.0303
112 3COB ADP 3.07263
113 4FRZ ADP 3.07263
114 1YTM ATP 3.07263
115 4IHQ ADP 3.07263
116 5I0H ADP BEF 3.07263
117 5MZN ADP 3.07263
118 4ZDJ UTP 3.07263
119 1GOJ ADP 3.09859
120 3ZS9 ADP ALF 3.10734
121 2WOJ ADP ALF 3.10734
122 1AKY AP5 3.18182
123 1ZIN AP5 3.22581
124 1S3G AP5 3.22581
125 3FB4 AP5 3.24074
126 4LJ9 ACP 3.24484
127 3NHB ADP 3.26797
128 4NE2 ADP 3.29341
129 4NE2 SH2 3.29341
130 1D2N ANP 3.30882
131 3ELW GP3 3.33333
132 1YQT ADP 3.35196
133 4H1V GNP 3.35196
134 4LYA ATP 3.35196
135 5YV5 ADP 3.35196
136 5LTJ ADP 3.35196
137 3DZD ADP 3.35196
138 3T34 GDP 3.35196
139 2O0J ADP 3.35196
140 3SXN COA 3.35196
141 5LTJ BEF 3.35196
142 4Z7X 3CX 3.36134
143 3LRE ADP 3.38028
144 4E03 ADP 3.39806
145 5WQP NCA 3.4188
146 2QZ4 ADP 3.43511
147 2HT6 GDP 3.44828
148 5YGE ACO 3.44828
149 5CK5 GDP 3.48101
150 5XKT GNP 3.5
151 5N69 ADP 3.51759
152 4FCW ADP 3.53698
153 4LC1 GDP 3.56083
154 1SQ5 ADP 3.57143
155 1BO4 COA 3.57143
156 1P72 ADP 3.59281
157 1QF9 ALF 3.60825
158 1QF9 C5P 3.60825
159 1QF9 ADP 3.60825
160 5M04 GDP 3.63128
161 3EC1 GDP 3.63128
162 2OG2 MLI 3.63128
163 4HSE ADP 3.63128
164 5VHC BEF ADP 3.63128
165 1SVM ATP 3.63128
166 4KBF AMP 3.63128
167 1BG2 ADP 3.69231
168 1Z06 GNP 3.7037
169 3EWA ANP 3.72671
170 3IO3 ADP 3.73563
171 1Y63 ADP 3.80435
172 5ZXD ATP 3.84615
173 5J1J ANP 3.85965
174 2RGX AP5 3.8835
175 2Y65 ADP 3.91061
176 5IRN ADP 3.91061
177 5ZBR ANP 3.91061
178 3G5N PB2 3.91061
179 1W5T ADP 3.91061
180 1W5T ANP 3.91061
181 4OI4 ATP 3.91061
182 4XTR ATP 3.91304
183 4XTR ADP 3.91304
184 4XVU ATP 3.91304
185 1KO8 6PG 4
186 4WOP CTP 4
187 4BAS GNP 4.0201
188 2GWH A3P 4.02685
189 1CR1 TTP 4.05405
190 3GJ0 GDP 4.0724
191 3GJ4 GDP 4.0724
192 3GJ3 GDP 4.0724
193 3GJ5 GDP 4.0724
194 4JLV ADP 4.08922
195 1UPT GTP 4.09357
196 2B4D COA 4.09357
197 3WYF GTP 4.10959
198 3B5J 12D 4.11523
199 4NU0 AP5 4.14747
200 1IBR GNP 4.16667
201 4PTZ FMN 4.18848
202 2G77 GDP 4.18994
203 2DPY ADP 4.18994
204 4ZKD GDP 4.18994
205 1OS1 ATP 4.18994
206 1OS1 PYR 4.18994
207 1F5N GNP 4.18994
208 5XDR ADP 4.18994
209 6B4K ANP 4.18994
210 1FDJ 13P 4.18994
211 1VKJ A3P 4.21053
212 2X7I CIT 4.22078
213 6CGD GNP 4.2623
214 6CGD AKN 4.2623
215 2ORV 4TA 4.2735
216 2YOH WMJ 4.28571
217 3BD9 A3P 4.28571
218 3B9Q MLI 4.30464
219 3N5C GDP 4.32099
220 3PCR GTP 4.32099
221 4KOT CE3 4.32099
222 2OFW ADX 4.32692
223 6B8B ADP 4.41767
224 2IXE ATP 4.42804
225 3VX3 ADP 4.43548
226 1MKY GDP 4.46927
227 5FG3 GDP 4.46927
228 2AWN ADP 4.46927
229 5H7J GCP 4.46927
230 5H7K GDP 4.46927
231 2NCD ADP 4.46927
232 4R43 GDP 4.46927
233 3FKQ ATP 4.46927
234 3VM7 GLC 4.46927
235 1FP6 ADP 4.49827
236 2WKQ GTP 4.51807
237 4X1Z FUC GAL NDG 4.51807
238 4LPS GDP 4.54545
239 5ZB0 ADP 4.54545
240 5ZB0 TYD 4.54545
241 2B8W ALF 5GP 4.57317
242 5J1S ATP 4.57746
243 1YRB GDP 4.58015
244 1JJ7 ADP 4.61538
245 6CS8 F9Y 4.62046
246 2FH5 GTP 4.6729
247 4QM7 GTP 4.67836
248 5GVR LMR 4.70085
249 4WZA ACP 4.71014
250 4WZA ADP 4.71014
251 4HUT ATP 4.71204
252 3KJI ADP 4.72441
253 1DAR GDP 4.7486
254 4P4T GDP 4.7486
255 5TSH ADP 4.7486
256 5TSH ANP 4.7486
257 1V8K ANP 4.7486
258 5AK0 8V1 4.7486
259 3TBK ANP 4.7486
260 1E5D FMN 4.7486
261 4M0R 644 4.7486
262 3KLL MAL 4.7486
263 5BQ5 ADP BEF 4.7619
264 4ITM ATP 4.7619
265 1ZD9 GDP 4.78723
266 2V2V V12 4.79705
267 3Q72 GNP 4.81928
268 5G3Y ADP 4.86726
269 2CHG ANP 4.86726
270 1R0X ATP 4.8951
271 3CPJ GDP 4.93274
272 1ION ADP 4.93827
273 2EW1 GNP 4.97512
274 2CDN ADP 4.97512
275 5HCN GCP 4.98084
276 5L3R GCP 4.98339
277 1YZG GDP 5.02793
278 3WXM GTP 5.02793
279 1G41 ADP 5.02793
280 2GMV UN8 5.02793
281 2GMV PEP 5.02793
282 1NHX FTB 5.02793
283 1NHX PEP 5.02793
284 3QF7 ANP 5.02793
285 2FSH ANP 5.02793
286 1G3Q ADP 5.06329
287 5U32 GDP 5.08475
288 3GJ7 GDP 5.10204
289 1L2T ATP 5.10638
290 1WA5 GTP 5.11364
291 4BQS K2Q 5.11364
292 4BQS ADP 5.11364
293 3BC1 GNP 5.12821
294 5TIV A3P 5.13834
295 1UJ2 ADP 5.15873
296 1UJ2 C5P 5.15873
297 3H4S ADP 5.18518
298 5SZH GNP 5.22876
299 1FQK GDP 5.23077
300 1Z0K GTP 5.23256
301 3M1I GTP 5.2356
302 1TAD GDP 5.24691
303 1TAD ALF 5.24691
304 5KSP GDP 5.26316
305 4YDS ATP 5.26316
306 4IOK XPO 5.30726
307 1XP8 AGS 5.30726
308 4IOK ADP 5.30726
309 2IL4 COA 5.30726
310 1K6M AGS 5.30726
311 1JJV ATP 5.33981
312 4BFW ZVW 5.34591
313 1DAK DPU 5.35714
314 1DAK ADP 5.35714
315 2BME GNP 5.37634
316 2VVG ADP 5.42857
317 4UXH T5A 5.43478
318 4WZ6 ATP 5.51724
319 5IRR GSP 5.51948
320 3SFV GDP 5.52486
321 4DKX GDP 5.55556
322 5O74 GDP 5.55556
323 2ZTS ADP 5.57769
324 6FAA ADP 5.58659
325 4AF0 IMP 5.58659
326 1Q19 APC 5.58659
327 3AB4 THR 5.61798
328 1IN4 ADP 5.68862
329 1X8J A3P 5.69801
330 2A5F GTP 5.69948
331 5DI3 GNP 5.70342
332 3NKV GNP 5.71429
333 4QRH 0O2 5.71429
334 3RLF ANP 5.74324
335 1Z0A GDP 5.74713
336 3QBT GNP 5.74713
337 4LHW GNP 5.74713
338 3TNF GNP 5.74713
339 6G14 G4P 5.78231
340 1M2O GNP 5.78947
341 1VG0 GDP 5.7971
342 1VG8 GNP 5.7971
343 5NUL FMN 5.7971
344 1OFH ADP 5.80645
345 2BEK ATP 5.83658
346 3R96 ACO 5.85106
347 3R96 AMP 5.85106
348 1QF5 RPL 5.86592
349 1QF5 GDP 5.86592
350 1G16 GDP 5.88235
351 1Z0J GTP 5.88235
352 1YVD GNP 5.91716
353 1Z2A GDP 5.95238
354 1NJF ADP 6
355 1NJF AGS 6
356 1Q20 A3P 6.02007
357 1Q20 PLO 6.02007
358 2F9L GDP 6.03015
359 2Z5F A3P 6.04027
360 1KY3 GDP 6.04396
361 3KTA AP5 6.04396
362 2OBM ADP 6.05187
363 4X8O AP5 6.07477
364 3IIJ ADP 6.11111
365 5BN3 ADP 6.14525
366 1FNN ADP 6.14525
367 5BYK A3P 6.17761
368 5BYK OAQ 6.17761
369 3E5H GNP 6.17978
370 6BSX GDP 6.17978
371 6BSX E7S 6.17978
372 3QXC ATP 6.19835
373 1T3D CYS 6.22837
374 5EP2 AZU 6.25
375 1OIV GDP 6.28272
376 1OIX GDP 6.28272
377 5LEF GTP 6.28272
378 3TKL GTP 6.36704
379 5K5Z ANP 6.36943
380 2ZPA ADP 6.42458
381 3V2U ATP 6.42458
382 1QHG ATP 6.42458
383 1R2Q GNP 6.47059
384 1VG1 GDP 6.48649
385 1VG9 GDP 6.48649
386 3RWO GDP 6.48649
387 2W2X GSP 6.48649
388 3QKT ANP 6.48968
389 1NN5 2DT 6.51163
390 1NN5 ANP 6.51163
391 3AQ4 GDP 6.52174
392 3MJH GTP 6.54762
393 2ZFI ADP 6.55738
394 1P9B GDP 6.56109
395 2QEN ADP 6.57143
396 2QTV GNP 6.58683
397 1S7N COA 6.59341
398 4M9Q GNP 6.60793
399 1J2J GTP 6.62651
400 2J59 GTP 6.62651
401 1O3Y GTP 6.62651
402 3SMA ACO 6.64336
403 5JCZ GDP 6.70391
404 2Y8E GNP 6.70391
405 5HR5 ADP 6.70391
406 4XGU ADP 6.70391
407 4PJ3 ANP 6.70391
408 1RE0 GDP 6.70732
409 1S9D GDP 6.70732
410 3E70 GDP 6.70732
411 4GOX A3P 6.70927
412 4LX0 BEF GDP 6.77966
413 1D5C GDP 6.79012
414 5Z2M GTP 6.81818
415 3FYH ADP 6.8323
416 4MKG AP5 6.91244
417 4C4P GNP 6.93642
418 2HV8 GTP 6.97674
419 1X6V ADP 6.98324
420 2R42 FPS 6.98324
421 2PZE ATP 6.9869
422 2KIN ADP 7
423 3BOS CDP 7.02479
424 2QG6 NMN 7.03518
425 1YZQ GNP 7.05882
426 2QQ0 ANP 7.06522
427 2QQ0 THM 7.06522
428 2QQ0 ADP 7.06522
429 2QQ0 TMP 7.06522
430 2JK0 ASP 7.07692
431 4P3Y GDP 7.1066
432 3U6B GDP 7.1066
433 4G5G GDP 7.1066
434 5JBQ GDP 7.1066
435 3U6K GDP 7.1066
436 4PC3 GDP 7.1066
437 1D8T GDP 7.12468
438 2BVN GNP 7.12468
439 4HAT GNP 7.14286
440 4Q1A UDP 7.14286
441 4Q1A 2XZ 7.14286
442 5NM7 GLY 7.14286
443 2ZR9 DTP 7.16332
444 1W4R TTP 7.17949
445 2D7C GTP 7.18563
446 3NJQ NJQ 7.25389
447 2Q2Y ADP 7.26257
448 2Q2Y MKR 7.26257
449 4YJ1 ADP 7.26257
450 4CVN ADP 7.29927
451 5EXT ADP 7.30769
452 1XX6 ADP 7.32984
453 5OCG GNP 7.40741
454 2ODE ALF GDP 7.42857
455 4J0Q GDP 7.5419
456 5W75 GDP 7.5419
457 3FVQ ATP 7.5419
458 6DEF GCP 7.5419
459 4HI0 GDP 7.54717
460 2XT3 ADP 7.55814
461 1F6B GDP 7.57576
462 2CBZ ATP 7.59494
463 5G41 AP5 7.62332
464 1B0U ATP 7.63359
465 1OXV ANP 7.64873
466 5UWP GNP 7.69231
467 5UWU GNP 7.69231
468 5UWO GNP 7.69231
469 6CIT GNP 7.69231
470 5UWQ GNP 7.69231
471 5UWS GNP 7.69231
472 5UWT GNP 7.69231
473 5UWH GNP 7.69231
474 5DIF GNP 7.69231
475 5UWI GNP 7.69231
476 5UWW GNP 7.69231
477 5UWJ GNP 7.69231
478 5UWR GNP 7.69231
479 5DHF GNP 7.69231
480 5DI9 GNP 7.69231
481 4PPF FLC 7.71429
482 2F3R G5P 7.72947
483 3REF GDP 7.73196
484 5H4S RAM 7.74648
485 1DS6 GDP 7.77778
486 2JAQ DCP 7.80488
487 1Z6T ADP 7.82123
488 2PEZ DAT 7.82123
489 2PEZ GGZ 7.82123
490 5L3W GDP 7.84314
491 2EFE GNH 7.86517
492 3CX8 GSP 7.88177
493 3T5G GDP 7.89474
494 4TTQ ATP 7.90698
495 5KUT GDP 7.93651
496 5TB5 GDP 8
497 3UIE ANP 8
498 5W76 GDP 8.05195
499 2C5L GTP 8.09249
500 6FA4 GNP 8.09249
501 3P4X ADP 8.10056
502 4IDN GNP 8.10056
503 2D7D ADP 8.10056
504 5TAR GDP 8.10811
505 5L3S GNP 8.10811
506 3MD0 GDP 8.16901
507 5WDR GNP 8.18713
508 4K81 GTP 8.18713
509 1SVI GDP 8.20513
510 5K04 COA 8.23529
511 1VHT BA3 8.25688
512 5O2T GSP 8.28402
513 1MR3 G3D 8.28729
514 4TL6 ANP 8.3004
515 2GDJ ANP 8.33333
516 2HCJ GDP 8.35821
517 2A5J GDP 8.37696
518 1ZCB GDP 8.37989
519 6BVJ GNP 8.38323
520 6D5E GNP 8.38323
521 6D5J GNP 8.38323
522 6BVK GNP 8.38323
523 6D5H GNP 8.38323
524 6D5G GNP 8.38323
525 1LFD GNP 8.38323
526 6D59 GNP 8.38323
527 6BVL GNP 8.38323
528 6BVI GNP 8.38323
529 6D56 GNP 8.38323
530 6BVM GNP 8.38323
531 6D55 GNP 8.38323
532 6D5L GNP 8.38323
533 6D5M GNP 8.38323
534 6D5V GNP 8.38323
535 1WQ1 GDP 8.43373
536 5WLB GNP 8.43373
537 3KUD GDP 8.43373
538 2UZI GTP 8.43373
539 1NVV GNP 8.43373
540 1CLU DBG 8.43373
541 1WRA PC 8.44156
542 2XTN GTP 8.54701
543 2A9K GDP 8.55615
544 5KSZ GCP 8.65922
545 4YS0 ADP 8.65922
546 4A4Z ANP 8.65922
547 5X40 ACP 8.65922
548 2A2C ADP 8.65922
549 2A2C NG1 8.65922
550 4D0G GTP 8.69565
551 3Q85 GNP 8.87574
552 4KVG GTP 8.92857
553 1F9V ADP 8.93372
554 3RC3 ANP 8.93855
555 6H3O FAD 8.93855
556 1GUA GNP 8.98204
557 4HDO GNP 8.98204
558 4HDQ GNP 8.98204
559 2W83 GTP 9.09091
560 1OE0 TTP 9.13043
561 1WDT GTP 9.21788
562 5Y6N ADP 9.21788
563 2BCG GDP 9.2233
564 2ZEJ GDP 9.23913
565 5E95 GDP 9.27835
566 2VB6 ADP BEF 9.39597
567 2WHX ADP 9.49721
568 2JLR ANP 9.49721
569 5LLB 6YZ 9.5057
570 1U8Z GDP 9.52381
571 3X1Z GNP 9.58084
572 1S8F GDP 9.60452
573 3CH5 GDP 9.61539
574 4M7V RAR 9.71429
575 4M7V NAP 9.71429
576 1ZC3 GNP 9.73451
577 4DCT GDP 9.77654
578 3BFX A3P 9.7973
579 4TMK T5A 9.85915
580 1XEX ATP 9.89011
581 4KFU ACP 9.90566
582 2C78 GNP 10.0559
583 1D2E GDP 10.0559
584 2C77 GNP 10.0559
585 1LVK MNT BEF 10.0559
586 2FAH GDP 10.0559
587 2FNA ADP 10.084
588 4V03 ADP 10.1167
589 1G6H ADP 10.1167
590 1TU3 GNP 10.1266
591 1RJ9 GCP 10.1974
592 5XC5 GTP 10.2273
593 1YZN GNP 10.2703
594 5GOE GDP 10.3352
595 1UKZ ADP 10.3448
596 1JI0 ATP 10.4167
597 1PUJ GNP 10.6383
598 4V0K GDP 10.6509
599 5KDO GDP 10.8108
600 2ZPT A3P 10.8475
601 2IYL GDP 10.9155
602 3DDC GNP 11.0429
603 4U00 ADP 11.0656
604 1W7J ADP BEF 11.1732
605 4YMU ATP 11.25
606 4KVA GTP 11.4525
607 5MVR ADP 11.7284
608 4KAX GTP 11.8012
609 3WYG GTP 11.8421
610 1NRJ GTP 11.9266
611 3GJ8 GDP 11.9565
612 2QN6 GDP 12.0112
613 4RD0 GDP 12.0112
614 1H74 ADP 12.1622
615 6AU6 GDP 12.2905
616 4D81 ADP 12.3675
617 2HF9 GSP 12.3894
618 3GJX GTP 12.5
619 3H86 AP5 12.5
620 5BXQ GDP 12.5984
621 1WF3 GNP 12.6246
622 6CRK GDP 12.6761
623 1GP2 GDP 12.6761
624 5W7Q GDP 12.8686
625 1GWN GTP 13.1707
626 1G3M PCQ 13.2653
627 1G3M A3P 13.2653
628 1ZJ6 G3D 13.369
629 3FWY ADP 13.3758
630 3A1S GDP 13.5659
631 1GOT GDP 13.6986
632 1H65 GDP 13.7037
633 1KAO GDP 13.7725
634 1Z83 AP5 13.7755
635 1CS4 GSP 13.7778
636 3DOE GTP 13.9394
637 2V7Q ATP 13.9665
638 1R6B ADP 13.9665
639 1W0J ADP 13.9665
640 2CK3 ANP 13.9665
641 2V7Q ADP 13.9665
642 1W0J ADP BEF 13.9665
643 2CK3 ADP 13.9665
644 6BYF CIT 14.1176
645 5OEC GDP 14.2132
646 1RYH GNP 14.2857
647 4MKF AP5 14.2857
648 5JCP GDP ALF 14.5251
649 1X1R GDP 14.6067
650 2J0V GDP 14.6226
651 1M7B GTP 14.6739
652 1F2U ATP 14.7651
653 1G7C 5GP 14.8936
654 4ZNL BEF ADP 14.9635
655 3DEF GDP 15.2672
656 1NF3 GNP 15.3846
657 3T12 GDP ALF 15.4412
658 4DID GDP 15.544
659 1MH1 GNP 15.5914
660 2NGR GDP 15.7068
661 1A4R GNH 15.7068
662 1GRN GDP 15.7068
663 1A4R GDP 15.7068
664 4ITR GDP 15.7068
665 1G4U GDP 15.7609
666 2WMO GTP 15.7895
667 4ZI2 GNP 15.7895
668 1HTW ADP 15.8228
669 4GOJ GNP 15.873
670 3PQC GDP 15.8974
671 2GCO GNP 15.9204
672 2GCN GDP 15.9204
673 1I4D GDP 16.1458
674 1E96 GTP 16.1458
675 1QHH ATP 16.1677
676 5UPK GNP 16.2162
677 1FZQ GDP 16.5746
678 4YC7 GNP 16.5746
679 3SBD GNP 16.5775
680 3AB3 GDP 17.0732
681 1B7T ADP 17.3077
682 1GXU 2HP 17.5824
683 1HE1 GDP 17.6136
684 1HE1 AF3 17.6136
685 3W5J GDP 18.1373
686 1UAD GNP 18.1818
687 1LVG ADP 18.1818
688 2GQT FAD 18.2836
689 6C90 ADP 19.2308
690 1KSH GDP 19.3548
691 1KK8 BEF ADP 19.4245
692 5UQW GDP 19.5767
693 3ZIA ATP 19.6721
694 3ZIA ADP 19.6721
695 2GJ8 ALF GDP 19.7674
696 3RAB GNP 20.1183
697 6AIC AMP 20.5607
698 2FJU GSP 20.7865
699 5IFS ADP 22.7848
700 1FQJ GDP 23.8095
701 3CNL GNP 24.0458
702 4YLG GDP 27.7457
703 5IRC GDP 27.957
704 4D0N GDP 28.1081
705 6BC0 GSP 28.1081
706 3LXR GDP 28.1081
707 5HPY GDP 28.1081
708 6BCB GSP 28.1081
709 6BCA GSP 28.1081
710 1KMQ GNP 28.2609
711 1CXZ GSP 28.5714
712 4XOI GTP 28.8889
713 4XSH GSP 29.0503
714 1TX4 ALF GDP 29.3785
715 1OW3 GDP 30.0518
716 5H67 ATP 31.25
717 5YT0 GDP 33.3333
718 2WJG GDP 43.0851
719 2WJH GDP 48.7952
720 2WJH FLC 48.7952
Pocket No.: 2; Query (leader) PDB : 2RCN; Ligand: GDP; Similar sites found with APoc: 4
This union binding pocket(no: 2) in the query (biounit: 2rcn.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 5AHM IMP 1.95531
2 4AVB ACO 2.4024
3 3AKI AH8 7.26257
4 2JEV NHQ 12.069
Pocket No.: 3; Query (leader) PDB : 2RCN; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2rcn.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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