Receptor
PDB id Resolution Class Description Source Keywords
2QX0 1.8 Å EC: 2.7.6.3 CRYSTAL STRUCTURE OF YERSINIA PESTIS HPPK (TERNARY COMPLEX) YERSINIA PESTIS 3-LAYERED ALPHA-BATA-ALPHA FOLD HOMODIMER TERNARY COMPLEXKINASE TRANSFERASE
Ref.: STRUCTURE AND ACTIVITY OF YERSINIA PESTIS 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE AS A NOVEL TARGET FOR THE DEVELOPMENT OF ANTIPLAGUE THERAPEUTICS. ACTA CRYSTALLOGR.,SECT.D V. 63 1169 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
APC A:171;
B:172;
Valid;
Valid;
none;
none;
submit data
505.208 C11 H18 N5 O12 P3 c1nc(...
MG A:161;
A:162;
B:163;
B:164;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
PH2 A:181;
B:182;
Valid;
Valid;
none;
none;
Kd = 0.78 uM
195.179 C7 H9 N5 O2 C1C(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2QX0 1.8 Å EC: 2.7.6.3 CRYSTAL STRUCTURE OF YERSINIA PESTIS HPPK (TERNARY COMPLEX) YERSINIA PESTIS 3-LAYERED ALPHA-BATA-ALPHA FOLD HOMODIMER TERNARY COMPLEXKINASE TRANSFERASE
Ref.: STRUCTURE AND ACTIVITY OF YERSINIA PESTIS 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE AS A NOVEL TARGET FOR THE DEVELOPMENT OF ANTIPLAGUE THERAPEUTICS. ACTA CRYSTALLOGR.,SECT.D V. 63 1169 2007
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2QX0 Kd = 0.78 uM PH2 C7 H9 N5 O2 C1C(=NC2=C....
70% Homology Family (38)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 3HD1 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
2 5ETO Kd = 2.7 uM 5RY C13 H9 F N6 O S c1cc(c(cc1....
3 1HQ2 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 3HT0 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
5 4M5J Kd = 14.5 uM YH5 C14 H13 N5 O3 S COc1ccc(cc....
6 5ETP Kd = 0.7 uM 5RZ C13 H10 Br N5 O2 S c1cc(ccc1C....
7 1DY3 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
8 5ETM Kd = 3.9 uM 5RW C12 H10 F N5 O S c1cc(ccc1C....
9 3HSG - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
10 5ETN Kd = 4.3 uM 5RX C12 H10 Cl N5 O S c1cc(ccc1C....
11 4M5M Kd = 18 uM DX4 C5 H5 N5 S c1[nH]c2c(....
12 1EX8 Kd = 0.47 uM A4P C17 H24 N10 O17 P4 c1nc(c2c(n....
13 4M5H Kd = 29.2 uM YH2 C13 H10 N6 O S c1cc(ccc1C....
14 1EQM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
15 3UDE - J1B C26 H38 N12 O4 S CC1(C(=NC2....
16 1Q0N - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
17 1RU2 Kd = 18 uM HHR C7 H7 N5 O2 c1c(nc2c(n....
18 3UD5 - J1A C24 H32 N12 O4 S c1c(nc2c(n....
19 4M5K Kd = 5.9 uM YH3 C14 H13 N5 O2 S Cc1cccc(c1....
20 4M5G Kd = 9.7 uM YH1 C13 H11 N5 O2 S c1ccc(cc1)....
21 5ETK Kd = 50 uM 5RU C12 H10 F N5 O S c1ccc(c(c1....
22 3IP0 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
23 3ILO - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
24 3HD2 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
25 4M5N Kd = 7.5 uM YH7 C5 H5 N5 S C1=NC2=C(N....
26 1RB0 - HH2 C7 H9 N5 O8 P2 c1c(nc2c(n....
27 5ETL Kd = 23 uM 5RV C13 H10 N6 O S c1ccc(c(c1....
28 4M5I Kd = 6.7 uM YH6 C14 H13 N5 O2 S Cc1ccc(cc1....
29 4F7V Kd = 4.16 uM J1D C23 H30 N12 O8 S CC1(C(=NC2....
30 1RU1 Kd = 18 uM PH2 C7 H9 N5 O2 C1C(=NC2=C....
31 3KUH - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
32 1F9H - PH2 C7 H9 N5 O2 C1C(=NC2=C....
33 3UDV Kd = 2.55 uM J1C C26 H36 N12 O5 S CC1(C(=NC2....
34 1RAO - HH2 C7 H9 N5 O8 P2 c1c(nc2c(n....
35 1TMM Kd = 0.23 uM APC C11 H18 N5 O12 P3 c1nc(c2c(n....
36 4M5L Kd = 18.9 uM YH4 C14 H13 N5 O2 S Cc1ccccc1C....
37 2QX0 Kd = 0.78 uM PH2 C7 H9 N5 O2 C1C(=NC2=C....
38 1CBK - ROI C8 H11 N5 O2 CC1(C(=NC2....
50% Homology Family (47)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 3HD1 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
2 5ETO Kd = 2.7 uM 5RY C13 H9 F N6 O S c1cc(c(cc1....
3 1HQ2 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
4 3HT0 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
5 4M5J Kd = 14.5 uM YH5 C14 H13 N5 O3 S COc1ccc(cc....
6 5ETP Kd = 0.7 uM 5RZ C13 H10 Br N5 O2 S c1cc(ccc1C....
7 1DY3 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
8 5ETM Kd = 3.9 uM 5RW C12 H10 F N5 O S c1cc(ccc1C....
9 3HSG - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
10 5ETN Kd = 4.3 uM 5RX C12 H10 Cl N5 O S c1cc(ccc1C....
11 4M5M Kd = 18 uM DX4 C5 H5 N5 S c1[nH]c2c(....
12 1EX8 Kd = 0.47 uM A4P C17 H24 N10 O17 P4 c1nc(c2c(n....
13 4M5H Kd = 29.2 uM YH2 C13 H10 N6 O S c1cc(ccc1C....
14 1EQM - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
15 3UDE - J1B C26 H38 N12 O4 S CC1(C(=NC2....
16 1Q0N - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
17 1RU2 Kd = 18 uM HHR C7 H7 N5 O2 c1c(nc2c(n....
18 3UD5 - J1A C24 H32 N12 O4 S c1c(nc2c(n....
19 4M5K Kd = 5.9 uM YH3 C14 H13 N5 O2 S Cc1cccc(c1....
20 4M5G Kd = 9.7 uM YH1 C13 H11 N5 O2 S c1ccc(cc1)....
21 5ETK Kd = 50 uM 5RU C12 H10 F N5 O S c1ccc(c(c1....
22 3IP0 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
23 3ILO - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
24 3HD2 - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
25 4M5N Kd = 7.5 uM YH7 C5 H5 N5 S C1=NC2=C(N....
26 1RB0 - HH2 C7 H9 N5 O8 P2 c1c(nc2c(n....
27 5ETL Kd = 23 uM 5RV C13 H10 N6 O S c1ccc(c(c1....
28 4M5I Kd = 6.7 uM YH6 C14 H13 N5 O2 S Cc1ccc(cc1....
29 4F7V Kd = 4.16 uM J1D C23 H30 N12 O8 S CC1(C(=NC2....
30 1RU1 Kd = 18 uM PH2 C7 H9 N5 O2 C1C(=NC2=C....
31 3KUH - APC C11 H18 N5 O12 P3 c1nc(c2c(n....
32 1F9H - PH2 C7 H9 N5 O2 C1C(=NC2=C....
33 3UDV Kd = 2.55 uM J1C C26 H36 N12 O5 S CC1(C(=NC2....
34 1RAO - HH2 C7 H9 N5 O8 P2 c1c(nc2c(n....
35 1TMM Kd = 0.23 uM APC C11 H18 N5 O12 P3 c1nc(c2c(n....
36 4M5L Kd = 18.9 uM YH4 C14 H13 N5 O2 S Cc1ccccc1C....
37 2QX0 Kd = 0.78 uM PH2 C7 H9 N5 O2 C1C(=NC2=C....
38 1CBK - ROI C8 H11 N5 O2 CC1(C(=NC2....
39 4AD6 Kd = 16.7 uM GSY C7 H9 N5 O2 S C(CO)n1c2c....
40 5ETQ Kd = 0.33 uM YH2 C13 H10 N6 O S c1cc(ccc1C....
41 5ETR Kd = 0.3 uM 5RW C12 H10 F N5 O S c1cc(ccc1C....
42 4CRJ Kd = 1.1 uM YH5 C14 H13 N5 O3 S COc1ccc(cc....
43 4CWB Kd = 0.81 uM X6L C19 H15 N5 O2 S c1ccc(cc1)....
44 5ETS Kd = 1.24 uM 5RX C12 H10 Cl N5 O S c1cc(ccc1C....
45 3QBC Kd = 12.8 uM B55 C5 H5 N5 O S c12c([nH]c....
46 5ETT Kd = 0.59 uM 5RY C13 H9 F N6 O S c1cc(c(cc1....
47 5ETV Kd = 0.57 uM 5RZ C13 H10 Br N5 O2 S c1cc(ccc1C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: APC; Similar ligands found: 330
No: Ligand ECFP6 Tc MDL keys Tc
1 APC 1 1
2 ACQ 0.831169 0.986301
3 A12 0.821918 1
4 AP2 0.821918 1
5 ADV 0.805195 0.972973
6 RBY 0.805195 0.972973
7 A 0.777778 0.931507
8 AMP 0.777778 0.931507
9 ADP 0.763158 0.958904
10 ACP 0.75641 0.986301
11 A2D 0.746667 0.932432
12 AP5 0.74026 0.932432
13 B4P 0.74026 0.932432
14 ATP 0.734177 0.958904
15 BA3 0.727273 0.932432
16 AQP 0.725 0.958904
17 5FA 0.725 0.958904
18 ABM 0.723684 0.881579
19 AMP MG 0.710526 0.857143
20 AN2 0.708861 0.945946
21 M33 0.7 0.92
22 TAT 0.698795 0.921053
23 SRA 0.697368 0.883117
24 AR6 0.682927 0.932432
25 APR 0.682927 0.932432
26 ADP MG 0.679012 0.87013
27 CA0 0.679012 0.907895
28 AU1 0.679012 0.933333
29 ADX 0.679012 0.841463
30 ANP 0.678571 0.933333
31 ADP PO3 0.674699 0.905405
32 SAP 0.674699 0.909091
33 AGS 0.674699 0.909091
34 AD9 0.674699 0.933333
35 BEF ADP 0.670732 0.848101
36 50T 0.670732 0.92
37 ADP BEF 0.670732 0.848101
38 ATP MG 0.666667 0.87013
39 PRX 0.662651 0.858974
40 ATF 0.643678 0.921053
41 MAP 0.640449 0.909091
42 A22 0.640449 0.945946
43 GAP 0.639535 0.858974
44 TAD 0.632653 0.923077
45 5AL 0.632184 0.894737
46 SON 0.626506 0.946667
47 ADQ 0.626374 0.907895
48 ADP ALF 0.625 0.8375
49 ALF ADP 0.625 0.8375
50 ANP MG 0.617977 0.860759
51 SRP 0.617977 0.896104
52 ADP VO4 0.617977 0.894737
53 VO4 ADP 0.617977 0.894737
54 25A 0.615385 0.932432
55 RAB 0.611111 0.810811
56 XYA 0.611111 0.810811
57 ADN 0.611111 0.810811
58 25L 0.610526 0.945946
59 A1R 0.608696 0.922078
60 4AD 0.608696 0.909091
61 DAL AMP 0.604396 0.87013
62 5SV 0.597826 0.839506
63 8QN 0.597826 0.894737
64 OOB 0.597826 0.894737
65 ADP BMA 0.595745 0.883117
66 OAD 0.595745 0.907895
67 PAJ 0.591398 0.851852
68 AMO 0.591398 0.921053
69 AOC 0.585366 0.789474
70 DLL 0.585106 0.894737
71 AHX 0.585106 0.886076
72 00A 0.585106 0.85
73 BIS 0.583333 0.897436
74 3OD 0.583333 0.907895
75 PTJ 0.583333 0.8625
76 3UK 0.578947 0.883117
77 DZD 0.577982 0.923077
78 5AS 0.576471 0.752809
79 5N5 0.573333 0.786667
80 PR8 0.572917 0.864198
81 WAQ 0.572917 0.897436
82 LAD 0.572917 0.875
83 4TC 0.571429 0.910256
84 ME8 0.56701 0.831325
85 TXA 0.56701 0.896104
86 1ZZ 0.56701 0.831325
87 FYA 0.56701 0.894737
88 NB8 0.56701 0.886076
89 5CD 0.565789 0.773333
90 A4D 0.565789 0.786667
91 ATP A A A 0.565657 0.893333
92 A3P 0.564706 0.931507
93 7D5 0.5625 0.868421
94 PAP 0.561798 0.945205
95 MYR AMP 0.561224 0.809524
96 G5P 0.558824 0.886076
97 M2T 0.556962 0.707317
98 A A 0.556701 0.906667
99 9SN 0.555556 0.839506
100 G2P 0.553191 0.923077
101 7D3 0.552941 0.894737
102 TXD 0.552381 0.873418
103 UP5 0.552381 0.884615
104 JB6 0.55102 0.873418
105 2A5 0.550562 0.907895
106 FA5 0.55 0.896104
107 YAP 0.55 0.884615
108 G3A 0.54902 0.886076
109 3AM 0.548781 0.891892
110 A2P 0.546512 0.917808
111 7D4 0.545455 0.894737
112 XAH 0.544554 0.853659
113 TYR AMP 0.544554 0.848101
114 ATR 0.544444 0.931507
115 EP4 0.544304 0.725
116 AFH 0.543689 0.875
117 4UV 0.539216 0.860759
118 G5A 0.538462 0.772727
119 GTA 0.538462 0.853659
120 NAI 0.537736 0.873418
121 DTA 0.5375 0.779221
122 3DH 0.536585 0.74359
123 AHZ 0.533333 0.788235
124 ARG AMP 0.533333 0.821429
125 LAQ 0.533333 0.831325
126 MTA 0.530864 0.74359
127 AR6 AR6 0.528846 0.881579
128 7MD 0.528846 0.853659
129 4UU 0.528846 0.860759
130 48N 0.528302 0.886076
131 LPA AMP 0.528302 0.809524
132 ITT 0.52809 0.905405
133 AMP DBH 0.524272 0.858974
134 NAX 0.523364 0.864198
135 DND 0.523364 0.896104
136 NXX 0.523364 0.896104
137 4UW 0.523364 0.829268
138 6V0 0.523364 0.8625
139 IMO 0.523256 0.891892
140 A4P 0.522936 0.813953
141 A5A 0.521277 0.77907
142 TSB 0.520833 0.790698
143 OMR 0.518519 0.843373
144 TXE 0.518519 0.873418
145 2AM 0.518072 0.905405
146 6RE 0.517647 0.753086
147 S4M 0.517241 0.681818
148 V3L 0.516129 0.932432
149 SSA 0.515789 0.793103
150 YLP 0.514019 0.833333
151 AP0 0.513761 0.8625
152 UPA 0.513761 0.873418
153 139 0.513514 0.864198
154 T5A 0.513514 0.855422
155 PPS 0.510638 0.841463
156 A2R 0.510417 0.945946
157 54H 0.510417 0.761364
158 VMS 0.510417 0.761364
159 52H 0.510417 0.752809
160 CNA 0.508929 0.896104
161 ZAS 0.505882 0.7375
162 A3N 0.505747 0.75641
163 J7C 0.505747 0.7625
164 5X8 0.505495 0.75641
165 53H 0.505155 0.752809
166 5CA 0.505155 0.793103
167 ALF ADP 3PG 0.504587 0.829268
168 LA8 ALF 3PG 0.504587 0.829268
169 AF3 ADP 3PG 0.504587 0.829268
170 TYM 0.504587 0.896104
171 IOT 0.504505 0.845238
172 YLC 0.5 0.853659
173 ADJ 0.5 0.843373
174 OVE 0.5 0.87013
175 YLB 0.5 0.833333
176 7MC 0.5 0.833333
177 P5A 0.49505 0.758242
178 NSS 0.494949 0.793103
179 LSS 0.494949 0.755556
180 DSZ 0.494949 0.793103
181 6AD 0.494737 0.875
182 MAO 0.494382 0.77381
183 DSH 0.494253 0.740741
184 A3D 0.491379 0.883117
185 NVA LMS 0.49 0.736264
186 AV2 0.489583 0.881579
187 COD 0.486957 0.825581
188 NAD 0.486957 0.894737
189 4TA 0.486957 0.821429
190 YLA 0.486726 0.833333
191 NA7 0.485149 0.972973
192 LEU LMS 0.485149 0.736264
193 3AT 0.484211 0.958904
194 GJV 0.483146 0.743902
195 AYB 0.482456 0.823529
196 5AD 0.480519 0.716216
197 GSU 0.480392 0.772727
198 KAA 0.480392 0.766667
199 NAD IBO 0.478261 0.8375
200 71V 0.477778 0.873418
201 A3G 0.477273 0.792208
202 7D7 0.474359 0.736842
203 BTX 0.474138 0.855422
204 G A A A 0.474138 0.839506
205 6C6 0.473684 0.896104
206 DAT 0.473118 0.92
207 SFG 0.473118 0.766234
208 YSA 0.471698 0.772727
209 PO4 PO4 A A A A PO4 0.470588 0.866667
210 BT5 0.470085 0.845238
211 AVV 0.47 0.910256
212 SMM 0.469388 0.701149
213 6IA 0.46875 0.829268
214 SAM 0.46875 0.705882
215 DTP 0.46875 0.92
216 A7D 0.467391 0.792208
217 AMP NAD 0.467213 0.848101
218 M24 0.466667 0.819277
219 SA8 0.463158 0.722892
220 A5D 0.463158 0.779221
221 NAE 0.46281 0.860759
222 PGS 0.462366 0.85
223 MHZ 0.462366 0.712644
224 NAJ PZO 0.462185 0.817073
225 DA 0.460674 0.893333
226 D5M 0.460674 0.893333
227 NEC 0.460674 0.717949
228 EAD 0.459677 0.841463
229 2SA 0.459184 0.921053
230 NAQ 0.459016 0.839506
231 NAJ PYZ 0.459016 0.819277
232 SAH 0.458333 0.759494
233 SAI 0.458333 0.75
234 Y3J 0.45679 0.697368
235 A A A 0.456311 0.92
236 AAM 0.455556 0.931507
237 6K6 0.455446 0.893333
238 ZID 0.455285 0.883117
239 4YB 0.454545 0.755556
240 S7M 0.454545 0.705882
241 YLY 0.454545 0.823529
242 PLP AAD 0.453782 0.736264
243 AMZ 0.453488 0.88
244 C2R 0.453488 0.868421
245 Z5A 0.451613 0.772727
246 7DD 0.451613 0.945205
247 A3S 0.451613 0.802632
248 7C5 0.449541 0.7875
249 101 0.449438 0.868421
250 EEM 0.44898 0.705882
251 N6P 0.446602 0.878378
252 ARU 0.446602 0.829268
253 AIR 0.445783 0.864865
254 U A G G 0.445378 0.85
255 P1H 0.445312 0.821429
256 NDE 0.445312 0.896104
257 N0B 0.443548 0.833333
258 A U 0.443478 0.8375
259 NIA 0.443182 0.792683
260 A3T 0.442105 0.789474
261 GEK 0.441176 0.753086
262 GP2 0.438776 0.923077
263 DDS 0.438776 0.868421
264 WSA 0.438596 0.781609
265 7DT 0.4375 0.945205
266 0WD 0.436975 0.886076
267 8BR 0.434783 0.871795
268 AAT 0.434343 0.722892
269 TXP 0.432203 0.886076
270 GGZ 0.431373 0.795181
271 NJP 0.428571 0.909091
272 A6D 0.428571 0.717647
273 FB0 0.427481 0.83908
274 NDC 0.427481 0.8625
275 649 0.426087 0.758242
276 7RA 0.423913 0.918919
277 NDP 0.423729 0.886076
278 0UM 0.423077 0.714286
279 ACK 0.422222 0.826667
280 QQY 0.422222 0.78481
281 RGT 0.422018 0.921053
282 FDA 0.421053 0.825581
283 CC5 0.419753 0.808219
284 ANZ 0.419643 0.771084
285 62X 0.419048 0.681818
286 APU 0.418803 0.860759
287 6FA 0.41791 0.833333
288 128 0.417391 0.75
289 ODP 0.416667 0.875
290 TM1 0.416667 0.747126
291 3AD 0.416667 0.797297
292 K15 0.415094 0.697674
293 2BA 0.414894 0.878378
294 CMP 0.414894 0.864865
295 V1N 0.414414 0.881579
296 S8M 0.413462 0.775
297 7RP 0.413043 0.890411
298 2VA 0.412371 0.769231
299 12D 0.412281 0.758621
300 SFD 0.411765 0.729167
301 NPW 0.411765 0.876543
302 FAS 0.411765 0.843373
303 2FA 0.411765 0.782051
304 FAD 0.411765 0.843373
305 QQX 0.411111 0.775
306 62F 0.410072 0.853659
307 FAI 0.408602 0.88
308 RMB 0.408602 0.837838
309 AS 0.408602 0.848101
310 NZQ 0.408333 0.898734
311 GCP 0.407767 0.910256
312 SXZ 0.407407 0.72619
313 SP1 0.406593 0.810127
314 RP1 0.406593 0.810127
315 U G A 0.404412 0.809524
316 D3Y 0.403846 0.782051
317 KB1 0.40367 0.714286
318 N01 0.403226 0.87013
319 SLU 0.403226 0.744444
320 5GP 0.402062 0.871795
321 G 0.402062 0.871795
322 NMN AMP PO4 0.401639 0.8375
323 XNP 0.401639 0.841463
324 SO8 0.4 0.759494
325 VRT 0.4 0.7625
326 DCA 0.4 0.837209
327 3L1 0.4 0.789474
328 3D1 0.4 0.789474
329 FNK 0.4 0.797753
330 ETB 0.4 0.825581
Ligand no: 2; Ligand: PH2; Similar ligands found: 6
No: Ligand ECFP6 Tc MDL keys Tc
1 PH2 1 1
2 2PH 0.55 0.830769
3 44W 0.5 0.857143
4 ZSP 0.482143 0.852459
5 78H 0.477612 0.898305
6 HBI 0.464286 0.852459
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2QX0; Ligand: PH2; Similar sites found: 182
This union binding pocket(no: 1) in the query (biounit: 2qx0.bio1) has 11 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5HCY 60D 0.009512 0.44645 None
2 5C1P ADP 0.005856 0.43207 None
3 5AX9 4KT 0.0121 0.415 None
4 4B1M FRU FRU 0.007735 0.40664 None
5 3WG3 A2G GAL NAG FUC 0.004169 0.40234 None
6 4USF 6UI 0.004841 0.44702 1.25786
7 4W6Z 8ID 0.0366 0.41349 1.25786
8 5EKO N17 0.0182 0.41087 1.25786
9 5C4L 4XR 0.004896 0.45552 1.88679
10 4K39 SAM 0.01172 0.41766 1.88679
11 3HAV ATP 0.001958 0.4169 1.88679
12 3AMN CBK 0.03351 0.40434 1.88679
13 3AMN CBI 0.03351 0.40434 1.88679
14 5DA3 58V 0.001041 0.40264 1.88679
15 4L3L 5FI 0.003668 0.46034 2.51572
16 5M06 ADP 0.001359 0.45663 2.51572
17 4YZN 4K5 0.003114 0.4548 2.51572
18 1U0A BGC BGC BGC BGC 0.005073 0.44127 2.51572
19 4FE2 ADP 0.0001522 0.41937 2.51572
20 3BIY 01K 0.04118 0.40185 2.51572
21 4YLZ LAT NAG GAL 0.005648 0.42134 2.61438
22 3MTX PGT 0.02238 0.4234 2.64901
23 5I2E 67D 0.04479 0.41628 3.10078
24 1VJY 460 0.009428 0.44204 3.14465
25 4QJP V1F 0.007628 0.43605 3.14465
26 5EHR 5OD 0.007404 0.42735 3.14465
27 3BP1 GUN 0.01244 0.41204 3.14465
28 5LPB ADP 0.01017 0.40907 3.14465
29 2PTZ PAH 0.01935 0.40369 3.14465
30 4Y0X ADP 0.0009042 0.46735 3.77358
31 3F7Z 34O 0.001796 0.46002 3.77358
32 3AKK ADP 0.002978 0.4544 3.77358
33 1O9U ADZ 0.001682 0.44352 3.77358
34 4UAL 3FV 0.004597 0.44005 3.77358
35 3MVH WFE 0.008243 0.43991 3.77358
36 3RI1 3RH 0.008654 0.43787 3.77358
37 1BZL GCG 0.04914 0.43074 3.77358
38 1M13 HYF 0.01981 0.41915 3.77358
39 3BL7 DD1 0.01159 0.41912 3.77358
40 2B9H ADP 0.009803 0.41895 3.77358
41 4XH0 ADP 0.001595 0.4182 3.77358
42 5EQU 5R6 0.03158 0.41637 3.77358
43 2PUL ACP 0.000163 0.40909 3.77358
44 5XDT GDP 0.03338 0.40853 3.77358
45 5XDT MB3 0.04382 0.40853 3.77358
46 4KIB SAH 0.01897 0.40039 3.77358
47 5LI1 ANP 0.001275 0.47742 4.40252
48 4CQE CQE 0.005098 0.46074 4.40252
49 3E7O 35F 0.005458 0.45926 4.40252
50 4XV1 904 0.004822 0.45912 4.40252
51 3PE2 E1B 0.008249 0.45609 4.40252
52 5LMK 6ZK 0.002499 0.45469 4.40252
53 5EYK 5U5 0.006073 0.44629 4.40252
54 4CLI 5P8 0.01045 0.44245 4.40252
55 4DC2 ADE 0.0008788 0.44151 4.40252
56 5GZ9 ANP 0.009451 0.43199 4.40252
57 4BCM T7Z 0.003895 0.43111 4.40252
58 4Q0L V14 0.01403 0.42635 4.40252
59 5W4W 9WG 0.02121 0.41218 4.40252
60 4A4X JUP 0.001071 0.48652 5.03145
61 5JKG 6LF 0.005983 0.45824 5.03145
62 3TKI S25 0.00853 0.45814 5.03145
63 4MNS 2AX 0.01173 0.45085 5.03145
64 5HES 032 0.004198 0.44602 5.03145
65 5IQD GNP 0.008878 0.44549 5.03145
66 5IQD RIO 0.009261 0.44549 5.03145
67 4TWP AXI 0.01297 0.44398 5.03145
68 5UR1 YY9 0.01405 0.4399 5.03145
69 2YAB AMP 0.004486 0.43871 5.03145
70 4CYI ATP 0.006161 0.43732 5.03145
71 3X01 AMP 0.0007948 0.43239 5.03145
72 1Y0G 8PP 0.02935 0.42746 5.03145
73 2QLU ADE 0.003465 0.42401 5.03145
74 5V22 SAH 0.01393 0.42192 5.03145
75 5O4J SAH 0.02553 0.41431 5.03145
76 5O4J 9KH 0.02553 0.41431 5.03145
77 3DLS ADP 0.01309 0.41203 5.03145
78 4YNM SAM 0.02546 0.40583 5.03145
79 4L9I 8PR 0.01866 0.40516 5.03145
80 1RYA GDP 0.0298 0.40473 5.03145
81 3T1A 5MA 0.02712 0.40291 5.03145
82 5K2M ADP 0.03061 0.40217 5.03145
83 2V7O DRN 0.001625 0.40142 5.03145
84 1TZD ADP 0.01207 0.40022 5.03145
85 5VC5 96M 0.003143 0.4654 5.66038
86 1IOW PHY 0.009264 0.44943 5.66038
87 1IOW ADP 0.009264 0.44943 5.66038
88 2FB3 5AD 0.007077 0.43269 5.66038
89 2FB3 GTP 0.01625 0.43237 5.66038
90 5DZT AMP 0.003337 0.43192 5.66038
91 1J3R 6PG 0.004797 0.42703 5.66038
92 2FB3 MET 0.009062 0.426 5.66038
93 4WNK 453 0.02944 0.41284 5.66038
94 1FDQ HXA 0.03529 0.40777 6.10687
95 5DBX ANP 0.0008005 0.47488 6.28931
96 2OFV 242 0.00645 0.44902 6.28931
97 4P5Z Q7M 0.007344 0.4489 6.28931
98 3T7S SAM 0.008505 0.43176 6.28931
99 5F3I 5UJ 0.04885 0.41852 6.28931
100 4CRL C1I 0.02727 0.4113 6.28931
101 3PN1 IVH 0.008186 0.41104 6.28931
102 1P6O HPY 0.009964 0.40602 6.28931
103 3KRR DQX 0.007122 0.47295 6.91824
104 5A6N U7E 0.002227 0.45701 6.91824
105 5JZJ AN2 0.002627 0.4527 6.91824
106 1UNH IXM 0.003291 0.4425 6.91824
107 3O0G 3O0 0.005179 0.43819 6.91824
108 5FBN 5WF 0.007992 0.43787 6.91824
109 5JFS 6K0 0.01639 0.43496 6.91824
110 1S68 AMP 0.002336 0.43391 6.91824
111 3KN5 ANP 0.005881 0.43205 6.91824
112 3E9I XAH 0.03015 0.41836 6.91824
113 1GP6 DH2 0.03097 0.40707 6.91824
114 1GP6 SIN 0.03097 0.40707 6.91824
115 1GP6 QUE 0.03271 0.40707 6.91824
116 4WN5 MVC 0.005472 0.4343 6.95652
117 5MW8 ATP 0.0003438 0.50918 7.54717
118 4WW7 AMP 0.0008399 0.48399 7.54717
119 5NJI 8Z2 0.005023 0.45273 7.54717
120 4BKJ STI 0.003714 0.44994 7.54717
121 5DEY 59T 0.01302 0.44915 7.54717
122 1M0W ANP 0.002815 0.44715 7.54717
123 5TO8 7FM 0.01235 0.44293 7.54717
124 4XYM A12 0.02567 0.40207 7.54717
125 5HVJ ANP 0.0002359 0.47174 8.1761
126 5LVP ATP 0.001547 0.46054 8.1761
127 5MY8 RXZ 0.004646 0.44205 8.1761
128 5COU ATP 0.004563 0.4413 8.1761
129 4JR7 GNP 0.005268 0.43389 8.1761
130 2GQR ADP 0.00001597 0.43336 8.1761
131 2GQS ADP 0.00001598 0.4333 8.1761
132 4MV1 ADP 0.01646 0.42591 8.1761
133 4Y85 499 0.01772 0.40254 8.1761
134 1RE8 BD2 0.01065 0.45309 8.80503
135 4M26 SIN 0.004494 0.44893 8.80503
136 4WB6 ATP 0.005837 0.44279 8.80503
137 2GU8 796 0.02092 0.4385 8.80503
138 4YLL 4E3 0.006092 0.43834 8.80503
139 5U6C 7YS 0.006867 0.43411 8.80503
140 3NW7 LGV 0.01573 0.43113 8.80503
141 1K3A ACP 0.006004 0.42056 8.80503
142 5UKL SIX 0.02344 0.41764 8.80503
143 5W2I ADP 0.002608 0.46159 9.43396
144 5W2I I3P 0.002608 0.46159 9.43396
145 5UI2 SUC 0.002978 0.42996 9.43396
146 5TDF ADP 0.01022 0.42855 9.43396
147 5TT5 NAD 0.03139 0.40574 9.43396
148 5CKW ANP 0.001743 0.44687 10.0629
149 5IXH OTP 0.01596 0.43613 10.0629
150 5DXI TRE 0.01639 0.40772 10.0629
151 5FNU L6I 0.02024 0.40756 10.0629
152 3G5D 1N1 0.01371 0.44192 10.6918
153 5VZ0 ADP 0.009375 0.42232 10.6918
154 1JGU HBC 0.009551 0.41178 10.6918
155 5JAQ NAI 0.002766 0.4801 11.3208
156 1JPA ANP 0.003029 0.44226 11.3208
157 3O2Q PRO THR SEP PRO SER TYR 0.02179 0.40956 11.3208
158 4Y8D 49J 0.002197 0.40532 11.3208
159 5MJA 7O3 0.01628 0.40116 11.3208
160 3OFM 4B0 0.00376 0.43383 11.9497
161 2BKK ADP 0.006278 0.42946 11.9497
162 1O94 AMP 0.02143 0.40447 11.9497
163 5C03 AGS 0.002215 0.45545 13.2075
164 5BVE 4VG 0.01019 0.45873 13.8365
165 4RDL FUC GAL NDG FUC 0.007421 0.42018 13.8365
166 4M69 ANP 0.001679 0.46635 14.4654
167 4EN4 GT0 0.006657 0.46018 15.0943
168 4EN4 GT1 0.006657 0.46018 15.0943
169 5N87 N66 0.009165 0.44168 15.3355
170 2WEL K88 0.0009805 0.42901 15.7233
171 5A3T MMK 0.01888 0.42671 15.7233
172 2VN9 GVD 0.001115 0.4077 15.7233
173 4AUA 4AU 0.00485 0.43641 16.3522
174 4YMJ 4EJ 0.001038 0.4275 16.3522
175 5LXC 7AA 0.003915 0.43826 18.8679
176 3RIY NAD 0.02184 0.41564 19.4969
177 5CEO 50D 0.001478 0.45592 21.3836
178 5HQ0 LZ9 0.004545 0.4437 21.4286
179 5LXM ADP 0.005921 0.43629 23.6842
180 4RFR RHN 0.01521 0.4138 24.5283
181 4D2S DYK 0.00209 0.45001 28.3019
182 4PZV J1D 0.000000005893 0.47409 45.283
Pocket No.: 2; Query (leader) PDB : 2QX0; Ligand: APC; Similar sites found: 32
This union binding pocket(no: 2) in the query (biounit: 2qx0.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3WH2 FLC 0.0009363 0.46576 None
2 3P7G MAN 0.002523 0.44543 None
3 1MRH FMC 0.004805 0.42844 None
4 2OFE NAG 0.007476 0.42248 None
5 2OFD NGA 0.01289 0.40885 None
6 4Z2S NDG 0.008232 0.42021 1.40845
7 4Z2S NAG 0.008232 0.42021 1.40845
8 2ATJ BHO 0.02076 0.40109 1.88679
9 5C5H 4YB 0.01986 0.40444 3.77358
10 4DN8 BMA 0.00153 0.44531 3.84615
11 1Y2W NAG 0.009066 0.42131 4.22535
12 2OX9 GAL NAG FUC 0.003174 0.4533 4.28571
13 3KU0 ADE 0.0001921 0.50225 4.40252
14 2QES ADE 0.0006985 0.46753 4.40252
15 3QDW NDG 0.005876 0.43354 4.8951
16 3QDY CBS 0.00651 0.4309 4.8951
17 3QDV NDG 0.007822 0.42709 4.8951
18 4N14 WR7 0.002734 0.45341 5.03145
19 1QCI ADE 0.01016 0.41227 5.03145
20 1U6R IOM 0.01849 0.40792 5.03145
21 1JZN BGC GAL 0.001521 0.44732 5.18518
22 1PWB GLC 0.000451 0.44053 5.66038
23 1PWB GLC GLC 0.002051 0.41442 5.66038
24 3W2E NAD 0.03085 0.40889 5.66038
25 3W2E FAD 0.03085 0.40889 5.66038
26 1J1R ADE 0.001658 0.45343 7.54717
27 3LE7 ADE 0.001778 0.44978 7.54717
28 1M2T ADE 0.004861 0.41835 8.1761
29 4DYG MES 0.006151 0.40452 8.1761
30 2MSB NAG BMA MAN MAN MAN MAN MAN 0.006724 0.42578 8.69565
31 3ALT MLB 0.005838 0.42861 13.3758
32 4PZV J1D 0.0000000308 0.53681 45.283
Pocket No.: 3; Query (leader) PDB : 2QX0; Ligand: APC; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2qx0.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2QX0; Ligand: PH2; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2qx0.bio1) has 11 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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