Receptor
PDB id Resolution Class Description Source Keywords
2QUI 2.4 Å EC: 6.1.1.2 CRYSTAL STRUCTURES OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRYPTOPHANAMIDE AND ATP HOMO SAPIENS AMINOACYL-TRNA SYNTHETASE ROSSMANN FOLD INDUCED-FIT MECHNISM ATP-BINDING CYTOPLASM LIGASE NUCLEOTIDE- BINDING PROTEIN BIOSYNTHESIS
Ref.: CATALYTIC MECHANISM OF THE TRYPTOPHAN ACTIVATION REACTION REVEALED BY CRYSTAL STRUCTURES OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN DIFFERENT ENZYMATIC STATES NUCLEIC ACIDS RES. V. 36 1288 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ATP A:502;
Valid;
none;
submit data
507.181 C10 H16 N5 O13 P3 c1nc(...
LTN A:501;
B:478;
Valid;
Valid;
none;
none;
submit data
203.24 C11 H13 N3 O c1ccc...
MG A:500;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1R6T 2.1 Å EC: 6.1.1.2 CRYSTAL STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE HOMO SAPIENS CLASS IC TRNA SYNTHETASE ROSSMANN FOLD CATALYTICAL DOMAIN RECOGNITION DOMAIN BOUND TRP-AMP LIGASE
Ref.: CRYSTAL STRUCTURES THAT SUGGEST LATE DEVELOPMENT OF CODE COMPONENTS FOR DIFFERENTIATING AROMATIC SIDE C PROC.NATL.ACAD.SCI.USA V. 100 15376 2003
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5UJJ - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 2QUI - LTN C11 H13 N3 O c1ccc2c(c1....
3 1R6T - TYM C21 H24 N7 O8 P c1ccc2c(c1....
4 2QUJ - TRP C11 H12 N2 O2 c1ccc2c(c1....
5 2QUH - TRP C11 H12 N2 O2 c1ccc2c(c1....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1R6U - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 5UJJ - TYM C21 H24 N7 O8 P c1ccc2c(c1....
3 2QUI - LTN C11 H13 N3 O c1ccc2c(c1....
4 1R6T - TYM C21 H24 N7 O8 P c1ccc2c(c1....
5 2QUJ - TRP C11 H12 N2 O2 c1ccc2c(c1....
6 2QUH - TRP C11 H12 N2 O2 c1ccc2c(c1....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1R6U - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 4J75 - TYM C21 H24 N7 O8 P c1ccc2c(c1....
3 5UJJ - TYM C21 H24 N7 O8 P c1ccc2c(c1....
4 2QUI - LTN C11 H13 N3 O c1ccc2c(c1....
5 1R6T - TYM C21 H24 N7 O8 P c1ccc2c(c1....
6 2QUJ - TRP C11 H12 N2 O2 c1ccc2c(c1....
7 2QUH - TRP C11 H12 N2 O2 c1ccc2c(c1....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ATP; Similar ligands found: 489
No: Ligand ECFP6 Tc MDL keys Tc
1 ATP 1 1
2 HEJ 1 1
3 AQP 0.985507 1
4 5FA 0.985507 1
5 AP5 0.927536 0.971831
6 B4P 0.927536 0.971831
7 BA3 0.913043 0.971831
8 ADP 0.9 1
9 A2D 0.884058 0.971831
10 AGS 0.84 0.945946
11 6YZ 0.833333 0.972222
12 AT4 0.810811 0.958904
13 AN2 0.810811 0.985915
14 25L 0.809524 0.985915
15 APR 0.802632 0.971831
16 AR6 0.802632 0.971831
17 M33 0.8 0.958333
18 ACQ 0.794872 0.972222
19 TAT 0.794872 0.958904
20 T99 0.794872 0.958904
21 AD9 0.792208 0.972222
22 ACP 0.789474 0.972222
23 A 0.788732 0.971429
24 AMP 0.788732 0.971429
25 ANP 0.772152 0.972222
26 HQG 0.756098 0.985915
27 CA0 0.753247 0.945205
28 ADX 0.753247 0.873418
29 A22 0.746988 0.985915
30 50T 0.74359 0.958333
31 KG4 0.74359 0.945205
32 PRX 0.734177 0.893333
33 APC 0.734177 0.958904
34 ABM 0.733333 0.917808
35 45A 0.733333 0.917808
36 ATF 0.731707 0.958904
37 7D4 0.730769 0.905405
38 ITT 0.730769 0.943662
39 AMP MG 0.72973 0.929577
40 ADQ 0.729412 0.945205
41 A3R 0.729412 0.907895
42 AP2 0.714286 0.958904
43 A12 0.714286 0.958904
44 A1R 0.709302 0.907895
45 SRA 0.706667 0.918919
46 JNT 0.701149 0.945205
47 5AL 0.698795 0.931507
48 8LE 0.698795 0.894737
49 ADP MG 0.696203 0.943662
50 ADP BEF 0.696203 0.943662
51 JSQ 0.695122 0.945946
52 HFD 0.695122 0.945946
53 9X8 0.693182 0.92
54 OAD 0.693182 0.945205
55 AU1 0.6875 0.972222
56 APC MG 0.682927 0.917808
57 8LH 0.682353 0.906667
58 SRP 0.682353 0.906667
59 G5P 0.680851 0.921053
60 25A 0.678161 0.971831
61 OZV 0.678161 0.971831
62 3OD 0.677778 0.945205
63 4AD 0.670455 0.92
64 G3A 0.670213 0.921053
65 8LQ 0.666667 0.906667
66 QA7 0.666667 0.894737
67 00A 0.662921 0.883117
68 ADP PO3 0.662651 0.943662
69 RBY 0.662651 0.932432
70 ADV 0.662651 0.932432
71 ATP MG 0.662651 0.943662
72 BIS 0.659341 0.933333
73 5SV 0.659091 0.848101
74 OOB 0.659091 0.931507
75 8QN 0.659091 0.931507
76 GTA 0.65625 0.886076
77 KMQ 0.655914 0.932432
78 BEF ADP 0.654762 0.917808
79 UP5 0.653061 0.92
80 AMO 0.651685 0.932432
81 PAJ 0.651685 0.884615
82 VO4 ADP 0.651163 0.945205
83 2A5 0.650602 0.918919
84 MAP 0.647727 0.945946
85 3AT 0.647059 0.971831
86 AHX 0.644444 0.896104
87 DLL 0.644444 0.931507
88 ATR 0.642857 0.971429
89 PAP 0.642857 0.985714
90 PTJ 0.641304 0.896104
91 V2G 0.639535 0.896104
92 7D3 0.6375 0.905405
93 3UK 0.637363 0.918919
94 SON 0.634146 0.932432
95 A4P 0.633663 0.843373
96 ANP MG 0.632184 0.931507
97 ALF ADP 0.632184 0.87013
98 LAD 0.630435 0.860759
99 PR8 0.630435 0.85
100 B5V 0.630435 0.906667
101 WAQ 0.630435 0.883117
102 AFH 0.628866 0.884615
103 LMS 0.628205 0.82716
104 DTP 0.627907 0.905405
105 GAP 0.627907 0.893333
106 TXA 0.623656 0.932432
107 ME8 0.623656 0.839506
108 NB8 0.623656 0.896104
109 1ZZ 0.623656 0.839506
110 FYA 0.623656 0.905405
111 DQV 0.622449 0.958333
112 T5A 0.621359 0.841463
113 XYA 0.619718 0.84507
114 RAB 0.619718 0.84507
115 ADN 0.619718 0.84507
116 DAL AMP 0.611111 0.905405
117 9SN 0.610526 0.871795
118 48N 0.61 0.896104
119 AP0 0.607843 0.896104
120 9ZD 0.604396 0.907895
121 9ZA 0.604396 0.907895
122 B5M 0.604167 0.894737
123 B5Y 0.604167 0.894737
124 FA5 0.604167 0.906667
125 NAX 0.60396 0.873418
126 DND 0.60396 0.932432
127 NAI 0.60396 0.907895
128 6V0 0.60396 0.896104
129 TXD 0.60396 0.907895
130 ADP BMA 0.602151 0.918919
131 A2R 0.6 0.985915
132 OMR 0.598039 0.851852
133 TXE 0.598039 0.907895
134 XAH 0.597938 0.839506
135 7DT 0.593023 0.985714
136 AOC 0.592593 0.821918
137 L3W 0.592233 0.932432
138 4UV 0.591837 0.894737
139 DDS 0.590909 0.878378
140 139 0.590476 0.873418
141 CNA 0.584906 0.932432
142 6AD 0.58427 0.909091
143 5AS 0.583333 0.77907
144 5N5 0.581081 0.819444
145 GA7 0.58 0.906667
146 4UU 0.58 0.894737
147 4TC 0.576923 0.896104
148 ADJ 0.575472 0.851852
149 5CD 0.573333 0.805556
150 A4D 0.573333 0.819444
151 RGT 0.571429 0.958904
152 A3P 0.571429 0.971429
153 7D5 0.56962 0.878378
154 LAQ 0.568627 0.839506
155 NO7 0.565217 0.932432
156 F2R 0.564815 0.864198
157 80F 0.563636 0.841463
158 CUU 0.563218 0.971831
159 YLP 0.563107 0.819277
160 UPA 0.561905 0.907895
161 AV2 0.56044 0.917808
162 COD 0.559633 0.811765
163 4UW 0.557692 0.860759
164 JB6 0.556701 0.883117
165 3AM 0.555556 0.929577
166 ATP A 0.555556 0.930556
167 ATP A A A 0.555556 0.930556
168 A2P 0.552941 0.957143
169 TYM 0.552381 0.906667
170 NA7 0.552083 0.958904
171 EP4 0.551282 0.753247
172 MYR AMP 0.55102 0.817073
173 PPS 0.549451 0.873418
174 YLB 0.54717 0.819277
175 YLC 0.54717 0.839506
176 DAT 0.545455 0.905405
177 NAD 0.545455 0.931507
178 H1Q 0.545455 0.90411
179 G5A 0.544444 0.77907
180 DTA 0.544304 0.786667
181 M2T 0.544304 0.734177
182 3DH 0.54321 0.773333
183 128 0.542857 0.776471
184 AHZ 0.538462 0.817073
185 SSA 0.537634 0.8
186 GTP 0.537634 0.92
187 MTA 0.5375 0.773333
188 IOT 0.537037 0.831325
189 A3D 0.535714 0.918919
190 AR6 AR6 0.533981 0.917808
191 ARG AMP 0.533981 0.829268
192 7MD 0.533981 0.8625
193 YLA 0.53211 0.819277
194 IMO 0.529412 0.929577
195 AMP DBH 0.529412 0.893333
196 TAD 0.528846 0.884615
197 AYB 0.527273 0.809524
198 HDV 0.526882 0.893333
199 A5A 0.526882 0.807229
200 TSB 0.526316 0.819277
201 EAD 0.525424 0.873418
202 2AM 0.52439 0.943662
203 6RE 0.52381 0.759494
204 6MZ 0.523256 0.930556
205 7DD 0.522727 0.985714
206 CZF 0.521739 0.931507
207 V3L 0.521739 0.971831
208 AVV 0.520833 0.896104
209 BTX 0.517857 0.841463
210 NAE 0.517241 0.894737
211 QBQ 0.516129 0.906667
212 52H 0.515789 0.77907
213 VMS 0.515789 0.788235
214 54H 0.515789 0.788235
215 NSS 0.515464 0.8
216 BT5 0.513274 0.831325
217 NAQ 0.512821 0.871795
218 ZAS 0.511905 0.766234
219 A3N 0.511628 0.786667
220 J7C 0.511628 0.769231
221 5X8 0.511111 0.763158
222 5CA 0.510417 0.8
223 53H 0.510417 0.77907
224 8X1 0.510417 0.752809
225 NVA LMS 0.510204 0.752809
226 ARU 0.510204 0.860759
227 ALF ADP 3PG 0.509259 0.8375
228 AF3 ADP 3PG 0.509259 0.8375
229 38V 0.508475 0.886076
230 ZID 0.508475 0.918919
231 P1H 0.508197 0.851852
232 OVE 0.505882 0.905405
233 S4M 0.505747 0.666667
234 LEU LMS 0.50505 0.730337
235 LPA AMP 0.504673 0.817073
236 NAD TDB 0.504587 0.917808
237 7MC 0.504587 0.841463
238 NAD IBO 0.504587 0.917808
239 D4F 0.504274 0.839506
240 P5A 0.5 0.744444
241 DZD 0.5 0.884615
242 DSZ 0.5 0.8
243 MAO 0.5 0.759036
244 DSH 0.5 0.725
245 LSS 0.5 0.761364
246 FB0 0.5 0.804598
247 NDE 0.495935 0.932432
248 N0B 0.495798 0.819277
249 M24 0.495726 0.85
250 YLY 0.495726 0.809524
251 NJP 0.495575 0.945946
252 9K8 0.49505 0.714286
253 MGP 0.494737 0.884615
254 6C6 0.494624 0.881579
255 O02 0.494624 0.921053
256 NWW 0.493671 0.760563
257 NAJ PZO 0.491379 0.848101
258 0WD 0.491228 0.921053
259 6G0 0.489583 0.884615
260 GJV 0.488636 0.75
261 6FA 0.488189 0.841463
262 5AD 0.486842 0.746479
263 KAA 0.485149 0.752809
264 GSU 0.485149 0.77907
265 71V 0.483146 0.907895
266 NEC 0.482759 0.746667
267 A3G 0.482759 0.8
268 ODP 0.482456 0.909091
269 K3K 0.480769 0.802632
270 FAS 0.48062 0.851852
271 FAD 0.48062 0.851852
272 7D7 0.480519 0.743243
273 FDA 0.480315 0.833333
274 N6P 0.48 0.915493
275 2SA 0.479167 0.932432
276 GP3 0.478723 0.921053
277 AMP NAD 0.478261 0.905405
278 SFG 0.478261 0.75
279 4TA 0.478261 0.807229
280 NDP 0.477876 0.921053
281 NPW 0.477876 0.886076
282 LQJ 0.47619 0.917808
283 NDC 0.47619 0.871795
284 YSA 0.47619 0.77907
285 NAJ PYZ 0.475 0.807229
286 MGO 0.474227 0.860759
287 NZQ 0.473684 0.909091
288 TXP 0.473684 0.921053
289 6IA 0.473684 0.8375
290 GDP 0.473684 0.92
291 A7D 0.472527 0.776316
292 J4G 0.470588 0.92
293 SFD 0.469231 0.734043
294 SA8 0.468085 0.707317
295 A5D 0.468085 0.786667
296 ZDA 0.468085 0.864865
297 12D 0.46789 0.785714
298 PGS 0.467391 0.883117
299 MHZ 0.467391 0.697674
300 8PZ 0.466667 0.8
301 62F 0.466165 0.8625
302 D5M 0.465909 0.878378
303 DA 0.465909 0.878378
304 GGZ 0.464646 0.825
305 SAH 0.463158 0.74359
306 SAI 0.463158 0.734177
307 FAY 0.462687 0.8625
308 Y3J 0.4625 0.726027
309 B1U 0.462264 0.736264
310 PO4 PO4 A A A A PO4 0.460784 0.902778
311 AAM 0.460674 0.971429
312 RFL 0.459259 0.821429
313 SMM 0.459184 0.686047
314 HF7 0.459184 0.893333
315 C2R 0.458824 0.90411
316 AMZ 0.458824 0.916667
317 SAM 0.458333 0.690476
318 K3E 0.457944 0.792208
319 A3S 0.456522 0.810811
320 FNK 0.455224 0.804598
321 7C5 0.453704 0.818182
322 AAT 0.453608 0.707317
323 EEM 0.453608 0.690476
324 NWQ 0.453488 0.739726
325 XNP 0.452991 0.873418
326 PRT 0.45283 0.931507
327 K2R 0.451923 0.88
328 AIR 0.451219 0.901408
329 62X 0.45098 0.666667
330 KOY 0.45045 0.802632
331 GSP 0.45 0.873418
332 ETB 0.45 0.833333
333 DCA 0.45 0.823529
334 N5O 0.449438 0.763158
335 NIA 0.448276 0.822785
336 A3T 0.446809 0.821918
337 K15 0.446602 0.682353
338 PUA 0.446281 0.884615
339 QXP 0.445545 0.785714
340 6K6 0.445545 0.930556
341 GEK 0.445545 0.7375
342 4YB 0.445455 0.761364
343 V47 0.444444 0.783784
344 S7M 0.444444 0.690476
345 DG1 0.443548 0.921053
346 1DG 0.443548 0.921053
347 Z5A 0.443548 0.77907
348 COA 0.442623 0.823529
349 0T1 0.442623 0.823529
350 WSA 0.442478 0.788235
351 8BR 0.43956 0.906667
352 N5A 0.43956 0.736842
353 DZ4 0.438776 0.881579
354 8Q2 0.438596 0.772727
355 101 0.438202 0.878378
356 IDP 0.4375 0.918919
357 NVA 2AD 0.4375 0.759494
358 9JJ 0.435714 0.8625
359 KY2 0.435644 0.731707
360 NAP 0.435484 0.945205
361 K2W 0.435185 0.740741
362 APU 0.434783 0.894737
363 7RP 0.433333 0.928571
364 QXG 0.432692 0.776471
365 A6D 0.432692 0.722892
366 TAP 0.432 0.907895
367 AMX 0.432 0.833333
368 COS 0.432 0.804598
369 CAO 0.432 0.795455
370 J7V 0.432 0.833333
371 30N 0.432 0.752688
372 V1N 0.431193 0.917808
373 KL2 0.430233 0.837838
374 K38 0.429907 0.779221
375 649 0.429825 0.744444
376 P5F 0.429577 0.823529
377 NA0 0.428571 0.932432
378 7RA 0.428571 0.957747
379 SCO 0.428571 0.823529
380 R2V 0.428571 0.785714
381 CMX 0.428571 0.823529
382 0UM 0.427184 0.698795
383 KYB 0.427184 0.731707
384 GAV 0.427184 0.884615
385 1RB 0.426966 0.885714
386 QQY 0.426966 0.815789
387 ACK 0.426966 0.861111
388 GCP 0.425743 0.896104
389 G1R 0.425743 0.907895
390 ACO 0.425197 0.795455
391 FCX 0.425197 0.795455
392 FAM 0.425197 0.804598
393 OZP 0.424779 0.728395
394 O05 0.424528 0.843373
395 GNH 0.424242 0.907895
396 F2N 0.423611 0.813953
397 K2H 0.423077 0.75641
398 GKE 0.422018 0.884615
399 GDC 0.422018 0.884615
400 K3H 0.422018 0.75
401 GDD 0.422018 0.884615
402 KYE 0.422018 0.714286
403 HAX 0.421875 0.804598
404 3AD 0.421687 0.805556
405 9GM 0.421569 0.896104
406 GNP 0.421569 0.896104
407 FA9 0.42069 0.864198
408 TM1 0.420561 0.77381
409 KY5 0.420561 0.725
410 KB1 0.420561 0.698795
411 9BG 0.420168 0.896104
412 H6Y 0.42 0.945205
413 2MC 0.419847 0.769231
414 KXW 0.419643 0.707317
415 FYN 0.418605 0.823529
416 3KK 0.418605 0.804598
417 S8M 0.417476 0.759494
418 7L1 0.417323 0.795455
419 26A 0.416667 0.763158
420 2VA 0.416667 0.8
421 NHD 0.416667 0.905405
422 HZ2 0.415929 0.731707
423 QQX 0.41573 0.805195
424 CA6 0.415385 0.729167
425 OXK 0.415385 0.804598
426 MCD 0.415385 0.804598
427 SOP 0.415385 0.804598
428 COK 0.415385 0.804598
429 YZS 0.415385 0.729167
430 KGP 0.415385 0.729167
431 KY8 0.415094 0.728395
432 K2K 0.415094 0.7375
433 FAJ 0.414966 0.831325
434 NX8 0.414141 0.716049
435 Q34 0.413793 0.674419
436 YE1 0.413534 0.813953
437 RMB 0.413043 0.873239
438 FAI 0.413043 0.916667
439 AS 0.413043 0.833333
440 CO6 0.412214 0.804598
441 1VU 0.412214 0.795455
442 NMX 0.412214 0.76087
443 CMC 0.412214 0.804598
444 SXZ 0.411215 0.710843
445 ANZ 0.410714 0.8
446 SCA 0.410448 0.804598
447 SCD 0.409091 0.823529
448 CAJ 0.409091 0.804598
449 NAD BBN 0.408759 0.841463
450 HY8 0.408696 0.731707
451 EO7 0.408602 0.788235
452 D3Y 0.407767 0.789474
453 CC5 0.407407 0.816901
454 KGA 0.407407 0.744681
455 KH3 0.40708 0.674419
456 PLP AAD 0.406504 0.733333
457 SLU 0.406504 0.770115
458 G 0.40625 0.906667
459 5GP 0.40625 0.906667
460 MLC 0.406015 0.804598
461 KGJ 0.406015 0.752688
462 1HE 0.406015 0.786517
463 3HC 0.406015 0.813953
464 A1S 0.406015 0.804598
465 IVC 0.406015 0.813953
466 BCO 0.406015 0.804598
467 GTG 0.405405 0.886076
468 NMN AMP PO4 0.404959 0.87013
469 Q2P 0.404959 0.674419
470 3D1 0.404762 0.773333
471 3L1 0.404762 0.773333
472 2BA 0.404255 0.915493
473 CMP 0.404255 0.901408
474 VRT 0.40404 0.769231
475 SO8 0.40404 0.789474
476 MCA 0.402985 0.795455
477 COO 0.402985 0.804598
478 CAA 0.402985 0.813953
479 SO5 0.402985 0.721649
480 LCV 0.402985 0.721649
481 NAD CJ3 0.402878 0.811765
482 3NZ 0.401869 0.782051
483 G2R 0.401869 0.884615
484 YXS 0.4 0.729167
485 2CP 0.4 0.795455
486 2FA 0.4 0.813333
487 YXR 0.4 0.729167
488 ZZB 0.4 0.77381
489 MC4 0.4 0.76087
Ligand no: 2; Ligand: LTN; Similar ligands found: 22
No: Ligand ECFP6 Tc MDL keys Tc
1 LTN 1 1
2 DTR 0.765957 0.777778
3 TRP 0.765957 0.777778
4 TR7 0.705882 0.692308
5 TRP GLY 0.631579 0.744186
6 TSR 0.5625 0.878788
7 VSK 0.529412 0.711111
8 1TZ 0.514286 0.711111
9 TSS 0.5 0.666667
10 LYS TRP 0.492754 0.727273
11 GLU ASP ASN ASP TRP ASN 0.472222 0.711111
12 R59 0.469697 0.681818
13 R38 0.469697 0.681818
14 ZIQ 0.465517 0.682927
15 IAD 0.4375 0.697674
16 61P 0.433735 0.680851
17 IAG 0.433333 0.697674
18 ASP TRP ASN 0.421053 0.711111
19 IAV 0.415385 0.697674
20 MET ASN TRP ASN ILE 0.414634 0.653061
21 FT6 0.409836 0.7
22 TYR GLU TRP 0.409639 0.680851
Similar Ligands (3D)
Ligand no: 1; Ligand: ATP; Similar ligands found: 41
No: Ligand Similarity coefficient
1 ADP AF3 0.9964
2 ADP ALF 0.9801
3 ADP VO4 0.9704
4 BEF GDP 0.9696
5 GDP ALF 0.9646
6 GDP AF3 0.9633
7 GDP BEF 0.9621
8 ALF GDP 0.9621
9 DBG 0.9581
10 CTP 0.9340
11 UTP 0.9337
12 GDP MG 0.9246
13 DGT 0.9177
14 DCP 0.9141
15 DCP MG 0.9114
16 8DG 0.9051
17 MGT 0.9049
18 6U4 0.8990
19 2KH 0.8972
20 MSP 0.8951
21 TTP 0.8917
22 MOD 0.8909
23 8GT 0.8879
24 G2P 0.8852
25 DGI 0.8847
26 2TM 0.8819
27 L3U 0.8814
28 M7G 0.8804
29 GP2 0.8802
30 DUT 0.8788
31 UNP 0.8786
32 Y9Z 0.8773
33 F6G 0.8769
34 DUP 0.8755
35 GH3 0.8730
36 D3T 0.8684
37 0RC 0.8650
38 BUP 0.8621
39 DUT MG 0.8599
40 UDP 0.8570
41 TYR AMP 0.8561
Ligand no: 2; Ligand: LTN; Similar ligands found: 704
No: Ligand Similarity coefficient
1 3IL 0.9880
2 IOP 0.9826
3 4OG 0.9784
4 ALN 0.9738
5 C0W 0.9701
6 9BF 0.9655
7 96Z 0.9647
8 78U 0.9597
9 EXR 0.9587
10 ITW 0.9568
11 NIY 0.9559
12 EXL 0.9541
13 CTE 0.9536
14 I2E 0.9523
15 2UD 0.9498
16 YOF 0.9495
17 DAH 0.9493
18 KYN 0.9476
19 IOS 0.9469
20 IAC 0.9460
21 5B2 0.9454
22 FWD 0.9437
23 9F8 0.9431
24 9UL 0.9417
25 HWH 0.9409
26 8XL 0.9409
27 3IB 0.9397
28 TOH 0.9396
29 CWD 0.9396
30 B41 0.9386
31 3SU 0.9386
32 2GQ 0.9386
33 4Z9 0.9384
34 BWD 0.9352
35 LL1 0.9351
36 GZV 0.9332
37 2FX 0.9332
38 MQB 0.9323
39 NVU 0.9321
40 ASE 0.9316
41 5WN 0.9314
42 GO2 0.9314
43 M3Q 0.9312
44 363 0.9309
45 IYR 0.9308
46 CC5 0.9306
47 5ER 0.9290
48 AVA 0.9290
49 AZY 0.9285
50 IWD 0.9282
51 KF5 0.9277
52 3D1 0.9276
53 DXK 0.9269
54 F40 0.9263
55 TMG 0.9262
56 FPL 0.9256
57 3D8 0.9249
58 NAL 0.9249
59 2LT 0.9248
60 XI7 0.9242
61 5F5 0.9242
62 NWD 0.9237
63 SY4 0.9231
64 5F8 0.9227
65 HH6 0.9227
66 5FL 0.9224
67 2JX 0.9219
68 9JT 0.9217
69 DHC 0.9216
70 DTE 0.9210
71 WLH 0.9209
72 EV2 0.9208
73 RVE 0.9207
74 PIQ 0.9205
75 HWD 0.9204
76 VM1 0.9203
77 MJ5 0.9198
78 B5A 0.9198
79 BB4 0.9195
80 PF1 0.9193
81 CH8 0.9193
82 AUV 0.9191
83 LSQ 0.9187
84 SYE 0.9180
85 BIO 0.9175
86 7D7 0.9174
87 H7S 0.9172
88 22L 0.9168
89 5AD 0.9167
90 C4E 0.9166
91 ENO 0.9164
92 JYW 0.9162
93 5TO 0.9161
94 THM 0.9159
95 CX4 0.9156
96 4GU 0.9152
97 0LO 0.9150
98 833 0.9150
99 JXT 0.9149
100 HJH 0.9146
101 6FG 0.9144
102 JYT 0.9143
103 X6P 0.9138
104 DUR 0.9135
105 APS 0.9134
106 ZON 0.9133
107 4Z1 0.9130
108 ZEA 0.9126
109 JY2 0.9123
110 EQA 0.9122
111 M5H 0.9121
112 CUT 0.9119
113 0OL 0.9118
114 PLP 0.9116
115 TZM 0.9116
116 BRH 0.9111
117 Q5M 0.9107
118 BY5 0.9105
119 EWG 0.9104
120 4MP 0.9103
121 GXG 0.9103
122 A73 0.9102
123 PQT 0.9100
124 EXG 0.9098
125 MMS 0.9096
126 EQW 0.9094
127 SSY 0.9093
128 4AU 0.9093
129 WVV 0.9092
130 JYK 0.9091
131 MDR 0.9091
132 FER 0.9090
133 MP5 0.9089
134 9B3 0.9088
135 AM1 0.9086
136 M02 0.9084
137 PW1 0.9084
138 ARP 0.9083
139 S3C 0.9082
140 TCR 0.9080
141 7AP 0.9080
142 TYR 0.9079
143 LR2 0.9078
144 JXK 0.9078
145 4BX 0.9077
146 H4B 0.9076
147 4XF 0.9071
148 DBS 0.9069
149 FNA 0.9067
150 NFZ 0.9066
151 PMP 0.9066
152 1QP 0.9065
153 1V1 0.9065
154 HBI 0.9065
155 GO8 0.9064
156 92O 0.9063
157 BZQ 0.9062
158 MD6 0.9061
159 TRF 0.9061
160 JCZ 0.9059
161 5OO 0.9058
162 25F 0.9058
163 YE6 0.9058
164 RCM 0.9058
165 DTY 0.9058
166 2LW 0.9057
167 QMS 0.9057
168 5E5 0.9056
169 ZZA 0.9053
170 6J9 0.9052
171 G6P 0.9052
172 TU0 0.9051
173 AMR 0.9049
174 ALE 0.9048
175 II4 0.9047
176 3VW 0.9046
177 848 0.9045
178 LRW 0.9044
179 20D 0.9044
180 6MW 0.9042
181 PVK 0.9042
182 ET0 0.9040
183 NPA 0.9035
184 DFL 0.9035
185 6C5 0.9035
186 PFF 0.9034
187 YE7 0.9032
188 0FR 0.9030
189 NKI 0.9029
190 2UB 0.9028
191 BZM 0.9028
192 D8Q 0.9027
193 QUS 0.9026
194 YF3 0.9026
195 G14 0.9024
196 EUH 0.9024
197 VYM 0.9023
198 SZ5 0.9020
199 N7I 0.9020
200 6DQ 0.9020
201 6DP 0.9020
202 GJK 0.9018
203 6HP 0.9017
204 CPW 0.9016
205 0K7 0.9015
206 657 0.9014
207 PVQ 0.9014
208 3EB 0.9014
209 NIR 0.9013
210 D1Y 0.9013
211 DHY 0.9012
212 SBK 0.9012
213 ZME 0.9012
214 54X 0.9011
215 FCW 0.9011
216 F52 0.9011
217 NFM 0.9010
218 5V7 0.9010
219 61M 0.9010
220 PHE 0.9009
221 LDC 0.9009
222 TI7 0.9008
223 MJW 0.9007
224 3F4 0.9006
225 AMQ 0.9004
226 ZIP 0.9003
227 FTV 0.9002
228 EYJ 0.9001
229 CGW 0.8998
230 CHQ 0.8998
231 EVO 0.8997
232 KP2 0.8995
233 JPQ 0.8995
234 ENG 0.8993
235 JFS 0.8991
236 EN1 0.8989
237 7L4 0.8988
238 SRO 0.8988
239 6C8 0.8987
240 RDV 0.8986
241 0OY 0.8985
242 SOJ 0.8985
243 1FE 0.8984
244 H35 0.8983
245 AC2 0.8983
246 5TZ 0.8982
247 7EH 0.8981
248 4MB 0.8979
249 OUB 0.8978
250 S7G 0.8978
251 BSA 0.8978
252 5P3 0.8976
253 A5H 0.8975
254 X2M 0.8975
255 3D3 0.8975
256 QBM 0.8973
257 EV3 0.8971
258 PUE 0.8970
259 5JT 0.8969
260 HA6 0.8967
261 MEX 0.8966
262 GXD 0.8965
263 WV7 0.8963
264 DEW 0.8962
265 272 0.8961
266 ARJ 0.8961
267 X0T 0.8961
268 L5D 0.8959
269 CUH 0.8959
270 8OE 0.8957
271 ZSP 0.8957
272 8OB 0.8956
273 0A1 0.8956
274 THU 0.8955
275 EYY 0.8954
276 TYC 0.8953
277 57O 0.8952
278 IQQ 0.8952
279 RK4 0.8952
280 F5C 0.8949
281 67Y 0.8949
282 B21 0.8949
283 PLR 0.8948
284 HVE 0.8948
285 P80 0.8948
286 6HO 0.8945
287 ADN 0.8945
288 CMU 0.8943
289 ABF 0.8942
290 PRO GLY 0.8942
291 4BF 0.8940
292 SLY 0.8940
293 Q4G 0.8939
294 JGY 0.8939
295 CIY 0.8936
296 3GX 0.8935
297 FCD 0.8932
298 BG6 0.8932
299 JHY 0.8932
300 BK9 0.8931
301 TPM 0.8931
302 JSX 0.8930
303 NQ7 0.8925
304 S1D 0.8925
305 VBC 0.8921
306 RNK 0.8918
307 PE2 0.8914
308 GNW 0.8913
309 8U3 0.8912
310 28S 0.8911
311 9CE 0.8911
312 HA5 0.8909
313 4FE 0.8909
314 HC4 0.8904
315 HX8 0.8903
316 790 0.8902
317 4FF 0.8902
318 Y3L 0.8902
319 69K 0.8901
320 GA2 0.8901
321 B4O 0.8901
322 49P 0.8900
323 LLT 0.8900
324 8RK 0.8899
325 4GP 0.8899
326 1Q4 0.8899
327 2KU 0.8898
328 W8G 0.8896
329 TLM 0.8895
330 CUQ 0.8892
331 1OH 0.8891
332 6C4 0.8891
333 M01 0.8891
334 DCZ 0.8890
335 L21 0.8889
336 LVD 0.8889
337 NFA 0.8887
338 DDU 0.8886
339 1PS 0.8885
340 TOM 0.8884
341 PHI 0.8884
342 1ER 0.8884
343 5WM 0.8884
344 TB8 0.8883
345 6N4 0.8882
346 BXZ 0.8882
347 6C9 0.8882
348 HSX 0.8880
349 E9S 0.8879
350 H2B 0.8879
351 G1P 0.8879
352 4NS 0.8877
353 3AK 0.8876
354 N1E 0.8875
355 QIV 0.8875
356 3B4 0.8874
357 4EU 0.8874
358 RGK 0.8873
359 NFK 0.8872
360 NEU 0.8871
361 1V4 0.8871
362 GHQ 0.8870
363 4K2 0.8869
364 WA2 0.8869
365 QUB 0.8868
366 CFA 0.8867
367 5NN 0.8867
368 I59 0.8866
369 MIL 0.8866
370 N91 0.8866
371 MFZ 0.8865
372 4R1 0.8865
373 LI7 0.8864
374 0OK 0.8864
375 TXW 0.8862
376 5MD 0.8862
377 S0F 0.8861
378 SLS 0.8861
379 LEL 0.8860
380 E9P 0.8860
381 URI 0.8859
382 C2Y 0.8859
383 LWS 0.8858
384 8MP 0.8857
385 4ZF 0.8857
386 ML1 0.8857
387 ZRK 0.8856
388 M5E 0.8856
389 A6P 0.8856
390 5GT 0.8853
391 NOS 0.8852
392 F1X 0.8848
393 VT3 0.8847
394 5WU 0.8847
395 2J5 0.8847
396 HPT 0.8847
397 TCC 0.8847
398 1V3 0.8843
399 3C4 0.8843
400 Q0K 0.8842
401 CR1 0.8841
402 0DF 0.8841
403 NCV 0.8838
404 NEO 0.8838
405 ISA 0.8837
406 TCL 0.8835
407 7ZC 0.8834
408 JP2 0.8834
409 BBY 0.8831
410 3Y7 0.8831
411 6QT 0.8830
412 JR2 0.8829
413 4AB 0.8829
414 27M 0.8828
415 CSN 0.8828
416 89J 0.8827
417 KCH 0.8827
418 S8D 0.8825
419 M4E 0.8825
420 92P 0.8824
421 GLP 0.8823
422 QR2 0.8823
423 GZ2 0.8822
424 CE2 0.8822
425 9FH 0.8821
426 3WJ 0.8820
427 HLP 0.8820
428 0SY 0.8819
429 OSB 0.8818
430 ZZ2 0.8818
431 M3W 0.8817
432 2P3 0.8817
433 HFA 0.8817
434 EGR 0.8815
435 JA3 0.8814
436 FMC 0.8814
437 AVO 0.8813
438 X48 0.8813
439 3XH 0.8811
440 S8G 0.8811
441 HXY 0.8810
442 CCV 0.8810
443 BP7 0.8809
444 QH3 0.8809
445 LP8 0.8809
446 PPY 0.8808
447 XFE 0.8807
448 P7Y 0.8807
449 0GA 0.8807
450 5I5 0.8806
451 7I2 0.8805
452 9KZ 0.8805
453 OIA 0.8804
454 PXP 0.8804
455 ZEZ 0.8804
456 6J5 0.8802
457 ZYV 0.8802
458 2D2 0.8801
459 3L1 0.8801
460 1AJ 0.8801
461 TYE 0.8800
462 X11 0.8800
463 S0G 0.8798
464 FMQ 0.8798
465 ERZ 0.8797
466 XYA 0.8797
467 0UL 0.8796
468 SHI 0.8795
469 0OO 0.8795
470 P93 0.8795
471 12R 0.8794
472 M6P 0.8793
473 EMU 0.8792
474 27K 0.8792
475 HJ8 0.8792
476 1BN 0.8790
477 G30 0.8789
478 AKD 0.8789
479 BVS 0.8788
480 4I8 0.8787
481 T03 0.8787
482 39Z 0.8786
483 STV 0.8785
484 STT 0.8785
485 R20 0.8784
486 A 0.8784
487 8HG 0.8784
488 2HC 0.8784
489 8D6 0.8783
490 AVX 0.8783
491 0OP 0.8782
492 11X 0.8782
493 2SX 0.8781
494 B23 0.8780
495 3VX 0.8779
496 MNP 0.8778
497 MPU 0.8776
498 3GV 0.8776
499 IPD 0.8774
500 OJD 0.8773
501 5E4 0.8772
502 EYV 0.8772
503 O2Y 0.8771
504 ETV 0.8771
505 7MX 0.8769
506 OCZ 0.8768
507 2QU 0.8765
508 AOY 0.8764
509 R9J 0.8761
510 55D 0.8761
511 CG8 0.8761
512 LVP 0.8761
513 FMB 0.8758
514 3VQ 0.8758
515 A4V 0.8757
516 B61 0.8756
517 BL0 0.8755
518 PH3 0.8755
519 AJD 0.8754
520 XDK 0.8753
521 4NR 0.8752
522 5CD 0.8749
523 5RP 0.8749
524 CLU 0.8749
525 0DN 0.8748
526 3TC 0.8748
527 IMH 0.8748
528 W23 0.8747
529 S2P 0.8745
530 D1G 0.8745
531 M9N 0.8745
532 F6P 0.8744
533 HPR 0.8744
534 9W5 0.8743
535 3LJ 0.8742
536 B86 0.8741
537 MUK 0.8740
538 S24 0.8738
539 MPP 0.8738
540 R4E 0.8738
541 52F 0.8736
542 A51 0.8736
543 4LW 0.8734
544 C9M 0.8731
545 H2W 0.8730
546 1VK 0.8729
547 CDJ 0.8725
548 M3E 0.8725
549 B2T 0.8725
550 SCT 0.8724
551 F06 0.8723
552 A9B 0.8723
553 A4D 0.8722
554 V1T 0.8722
555 5VU 0.8721
556 KPV 0.8720
557 6NJ 0.8718
558 MUX 0.8717
559 BZE 0.8716
560 28A 0.8715
561 4FP 0.8715
562 PRH 0.8715
563 BGP 0.8713
564 B40 0.8712
565 1SF 0.8710
566 IDZ 0.8710
567 JF2 0.8710
568 36M 0.8709
569 IQW 0.8708
570 2L1 0.8707
571 BHS 0.8707
572 JVD 0.8707
573 1XS 0.8707
574 ZYQ 0.8706
575 263 0.8705
576 5BT 0.8704
577 KED 0.8703
578 U7E 0.8703
579 TQU 0.8702
580 EAJ 0.8702
581 DDC 0.8701
582 9DI 0.8699
583 JXW 0.8698
584 RKV 0.8698
585 DCN 0.8698
586 XIF XYP 0.8697
587 8GK 0.8696
588 DER 0.8692
589 IBC 0.8690
590 BPY 0.8690
591 RAB 0.8689
592 VJJ 0.8687
593 KLS 0.8687
594 L12 0.8687
595 OA1 0.8687
596 JOV 0.8686
597 M6Z 0.8686
598 8DA 0.8684
599 K82 0.8683
600 4YZ 0.8682
601 LJ3 0.8679
602 GMP 0.8675
603 MCY 0.8675
604 RCV 0.8673
605 LDP 0.8673
606 1HP 0.8671
607 JRB 0.8671
608 ZZU 0.8670
609 FXH 0.8668
610 RSV 0.8668
611 SJK 0.8667
612 NAG 0.8664
613 GC2 0.8664
614 JXZ 0.8661
615 5F1 0.8661
616 OX2 0.8659
617 CH9 0.8659
618 HL4 0.8657
619 4CF 0.8656
620 WCU 0.8655
621 M6D 0.8653
622 8Y7 0.8651
623 4AV 0.8651
624 KLV 0.8650
625 NPL 0.8649
626 CK2 0.8647
627 LNR 0.8645
628 AP6 0.8645
629 ELH 0.8644
630 MBP 0.8642
631 PQZ 0.8642
632 B0K 0.8640
633 50C 0.8640
634 E9L 0.8640
635 XEV 0.8639
636 TL6 0.8638
637 YTX 0.8638
638 5WS 0.8638
639 9VZ 0.8637
640 7PJ 0.8633
641 EAT 0.8632
642 HS6 0.8632
643 1A7 0.8631
644 FM2 0.8630
645 B2E 0.8628
646 X04 0.8627
647 5M2 0.8627
648 FHI 0.8625
649 3DT 0.8624
650 6J3 0.8623
651 TLG 0.8622
652 4Z0 0.8622
653 AD3 0.8618
654 C6Z 0.8617
655 TIZ 0.8616
656 A7K 0.8616
657 0XR 0.8616
658 BQ5 0.8615
659 0QW 0.8615
660 HJ7 0.8613
661 S0W 0.8613
662 5AE 0.8611
663 QIF 0.8611
664 YO5 0.8609
665 8UY 0.8607
666 HHV 0.8607
667 56D 0.8605
668 26P 0.8604
669 7VF 0.8603
670 PUR 0.8603
671 5FD 0.8600
672 H7Y 0.8600
673 8CC 0.8599
674 M0N 0.8597
675 IMG 0.8593
676 PMM 0.8592
677 FC2 0.8591
678 57D 0.8587
679 1DA 0.8587
680 U4J 0.8584
681 F01 0.8583
682 GC3 0.8579
683 XYP XYP 0.8578
684 PZP 0.8578
685 6HX 0.8577
686 6XC 0.8576
687 TA6 0.8574
688 ID2 0.8573
689 J9Y 0.8570
690 JF8 0.8567
691 S7S 0.8567
692 PRZ 0.8564
693 5SJ 0.8564
694 L1T 0.8564
695 R2P 0.8562
696 WDW 0.8562
697 0OM 0.8558
698 Q8G 0.8556
699 M6H 0.8553
700 HBO 0.8553
701 NBB 0.8551
702 SSM 0.8543
703 7M2 0.8541
704 XYP XDN 0.8527
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1R6T; Ligand: TYM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1r6t.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback