Receptor
PDB id Resolution Class Description Source Keywords
2PHX 1.8 Å NON-ENZYME: BINDING PTEROCARPUS ANGOLENSIS LECTIN (PAL) IN COMPLEX WITH MAN-5 PTEROCARPUS ANGOLENSIS LECTIN CARBOHYDRATE HIGH MANNOSE SUGAR BINDING PROTEIN
Ref.: HOW A PLANT LECTIN RECOGNIZES HIGH MANNOSE OLIGOSAC PLANT PHYSIOL. V. 144 1733 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:302;
B:302;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
MAN MAN A:253;
Valid;
none;
submit data
342.297 n/a O(CC1...
MAN MAN MAN MAN B:253;
Valid;
none;
submit data
666.579 n/a O(CC1...
MN A:301;
B:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
54.938 Mn [Mn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2PHX 1.8 Å NON-ENZYME: BINDING PTEROCARPUS ANGOLENSIS LECTIN (PAL) IN COMPLEX WITH MAN-5 PTEROCARPUS ANGOLENSIS LECTIN CARBOHYDRATE HIGH MANNOSE SUGAR BINDING PROTEIN
Ref.: HOW A PLANT LECTIN RECOGNIZES HIGH MANNOSE OLIGOSAC PLANT PHYSIOL. V. 144 1733 2007
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2PHX - MAN MAN n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2PHX - MAN MAN n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 2PHX - MAN MAN n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MAN MAN; Similar ligands found: 178
No: Ligand ECFP6 Tc MDL keys Tc
1 BGC GLA 1 1
2 GAL GLC 1 1
3 GLA BGC 1 1
4 BGC GLC 1 1
5 GLA GLC 1 1
6 LAK 1 1
7 GAL GAL 1 1
8 GLC BGC 1 1
9 MLB 1 1
10 MAN BMA 1 1
11 MAN MAN 1 1
12 BMA GLA 1 1
13 BMA MAN 1 1
14 GLC GLC 1 1
15 GLA BMA 1 1
16 BMA MAN MAN 0.953488 1
17 GLC GLC GLC GLC GLC BGC 0.953488 1
18 MAN MAN MAN 0.953488 1
19 GLC GLC GLC 0.953488 1
20 GLC GLC GLC GLC BGC 0.953488 1
21 AHR AHR 0.75 0.857143
22 FUB AHR 0.75 0.857143
23 MAN MAN MAN MAN 0.732143 1
24 MAN MAN BMA MAN 0.732143 1
25 AHR AHR AHR AHR AHR AHR 0.702128 0.857143
26 FUB AHR AHR 0.702128 0.857143
27 MAN BMA MAN 0.672727 1
28 MAN MMA 0.66 0.942857
29 GLC GLC GLC BGC 0.633333 1
30 M5S 0.606557 1
31 MAN BMA MAN MAN MAN 0.606557 1
32 MAN MAN MAN BMA MAN 0.575758 1
33 BMA BMA GLA BMA BMA 0.546875 1
34 MAN MMA MAN 0.540984 0.942857
35 MAN MAN MAN MAN MAN MAN MAN 0.535211 1
36 RAF 0.515625 0.891892
37 GIV 0.511628 0.848485
38 GLA 0.511628 0.848485
39 WOO 0.511628 0.848485
40 MAN 0.511628 0.848485
41 GAL 0.511628 0.848485
42 GLC 0.511628 0.848485
43 BGC 0.511628 0.848485
44 GXL 0.511628 0.848485
45 BMA 0.511628 0.848485
46 ALL 0.511628 0.848485
47 STW 0.507692 0.891892
48 MAN MAN MAN BMA MAN MAN MAN 0.5 0.942857
49 BMA MAN MAN MAN MAN 0.485294 1
50 NGB 0.485294 0.622642
51 4CQ 0.483871 0.970588
52 WZ2 0.477612 0.868421
53 LBT 0.472727 1
54 N9S 0.472727 1
55 CBI 0.472727 1
56 MAB 0.472727 1
57 LAT 0.472727 1
58 CBK 0.472727 1
59 B2G 0.472727 1
60 BGC BMA 0.472727 1
61 GLC GAL 0.472727 1
62 GLA GLA 0.472727 1
63 BMA GAL 0.472727 1
64 GLA GAL 0.472727 1
65 MAL 0.472727 1
66 GAL BGC 0.472727 1
67 BGC GAL 0.472727 1
68 NAG MAN MAN 0.472222 0.733333
69 RGG 0.471698 0.882353
70 SUC GLA 0.471429 0.891892
71 DMJ MAN 0.466667 0.695652
72 NOJ BGC 0.466667 0.695652
73 WZ3 0.463768 0.916667
74 DEG 0.462963 0.769231
75 IFM MAN 0.459016 0.711111
76 EMZ 0.458333 0.783784
77 M6P 0.45098 0.674419
78 G6P 0.45098 0.674419
79 BG6 0.45098 0.674419
80 M6D 0.45098 0.674419
81 A6P 0.45098 0.674419
82 BGP 0.45098 0.674419
83 AHR AHR AHR 0.45 0.805556
84 EBG 0.446429 0.837838
85 M3M 0.446429 1
86 LB2 0.446429 1
87 NGR 0.446429 1
88 EBQ 0.446429 0.789474
89 MAN GLC 0.446429 1
90 MT7 0.440678 1
91 MAN BMA BMA BMA BMA BMA 0.440678 1
92 DXI 0.440678 1
93 GLC GAL GAL 0.440678 1
94 BGC BGC BGC BGC 0.440678 1
95 GLC BGC BGC BGC BGC BGC 0.440678 1
96 GLC BGC GLC 0.440678 1
97 CEX 0.440678 1
98 GLC BGC BGC BGC BGC 0.440678 1
99 BGC GLC GLC GLC GLC GLC GLC 0.440678 1
100 MLR 0.440678 1
101 BGC BGC BGC BGC BGC 0.440678 1
102 CE5 0.440678 1
103 MAN BMA BMA BMA BMA 0.440678 1
104 BMA BMA BMA BMA BMA 0.440678 1
105 MTT 0.440678 1
106 MAN MAN BMA BMA BMA BMA 0.440678 1
107 GLC GLC GLC GLC GLC 0.440678 1
108 BGC GLC GLC 0.440678 1
109 BMA MAN BMA 0.440678 1
110 BGC GLC GLC GLC 0.440678 1
111 GLA GAL GLC 0.440678 1
112 CT3 0.440678 1
113 BGC BGC BGC 0.440678 1
114 BGC BGC GLC 0.440678 1
115 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.440678 1
116 CTR 0.440678 1
117 CEY 0.440678 1
118 GLC BGC BGC 0.440678 1
119 GLA GAL BGC 0.440678 1
120 BMA BMA BMA BMA BMA BMA 0.440678 1
121 GLC GLC BGC 0.440678 1
122 CTT 0.440678 1
123 BGC BGC BGC BGC BGC BGC 0.440678 1
124 BGC BGC BGC GLC 0.440678 1
125 MAN BMA BMA 0.440678 1
126 B4G 0.440678 1
127 GAL GAL GAL 0.440678 1
128 BGC GLC GLC GLC GLC 0.440678 1
129 CE8 0.440678 1
130 BMA BMA BMA 0.440678 1
131 GLC BGC BGC BGC 0.440678 1
132 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.440678 1
133 CE6 0.440678 1
134 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.439024 0.6875
135 1GN ACY GAL ACY 1GN BGC GAL BGC 0.439024 0.6875
136 JZR 0.438596 0.714286
137 BHG 0.438596 0.714286
138 GLC HEX 0.438596 0.714286
139 TRE 0.4375 1
140 BMA Z4Y NAG 0.435897 0.717391
141 B7G 0.431034 0.738095
142 KGM 0.431034 0.738095
143 2M4 0.428571 1
144 MBG 0.428571 0.857143
145 MMA 0.428571 0.857143
146 GYP 0.428571 0.857143
147 AMG 0.428571 0.857143
148 GAL GAL SO4 0.424242 0.66
149 BOG 0.423729 0.738095
150 BNG 0.423729 0.738095
151 HSJ 0.423729 0.738095
152 M1P 0.423077 0.697674
153 XGP 0.423077 0.697674
154 G1P 0.423077 0.697674
155 GL1 0.423077 0.697674
156 BGC BGC XYS BGC 0.418919 0.942857
157 GAL FUC 0.416667 0.941176
158 SER MAN 0.416667 0.72093
159 XYT 0.415385 0.767442
160 BQZ 0.415094 0.909091
161 6SA 0.414894 0.733333
162 GAL BGC NAG GAL 0.413333 0.733333
163 GAL BGC BGC XYS 0.410959 0.942857
164 BGC BGC BGC GLC BGC BGC 0.409836 1
165 GLC BGC BGC BGC BGC BGC BGC 0.409836 1
166 GLA EGA 0.409836 0.942857
167 DGD 0.409639 0.733333
168 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.409091 0.733333
169 NAG NAG BMA MAN MAN 0.406977 0.6875
170 T6P 0.40678 0.767442
171 GLA GAL GAL 0.40625 1
172 IAB 0.404494 0.733333
173 MAN MAN BMA 0.403226 1
174 BMA BMA MAN 0.403226 1
175 GLC BGC BGC XYS BGC XYS XYS 0.402597 0.942857
176 BGC BGC BGC XYS BGC XYS XYS 0.402597 0.942857
177 BGC BGC XYS BGC XYS BGC XYS 0.402597 0.942857
178 BMA MAN MAN MAN 0.4 1
Ligand no: 2; Ligand: MAN MAN MAN MAN; Similar ligands found: 167
No: Ligand ECFP6 Tc MDL keys Tc
1 MAN MAN MAN MAN 1 1
2 MAN MAN BMA MAN 1 1
3 M5S 0.852459 1
4 MAN BMA MAN MAN MAN 0.852459 1
5 MAN MAN MAN BMA MAN 0.80303 1
6 MAN BMA MAN 0.754098 1
7 GLC GLC GLC GLC BGC 0.736842 1
8 BMA MAN MAN 0.736842 1
9 GLC GLC GLC 0.736842 1
10 MAN MAN MAN 0.736842 1
11 GLC GLC GLC GLC GLC BGC 0.736842 1
12 GLC GLC 0.732143 1
13 GLA GLC 0.732143 1
14 GAL GAL 0.732143 1
15 BGC GLC 0.732143 1
16 BMA MAN 0.732143 1
17 GLC BGC 0.732143 1
18 BGC GLA 0.732143 1
19 MLB 0.732143 1
20 GAL GLC 0.732143 1
21 MAN MAN 0.732143 1
22 GLA BGC 0.732143 1
23 MAN BMA 0.732143 1
24 GLA BMA 0.732143 1
25 LAK 0.732143 1
26 BMA GLA 0.732143 1
27 MAN MMA MAN 0.703125 0.942857
28 MAN MAN MAN BMA MAN MAN MAN 0.675325 0.942857
29 WZ3 0.611111 0.916667
30 MAN MAN MAN MAN MAN MAN MAN 0.61039 1
31 GLC GLC GLC BGC 0.591549 1
32 NAG BMA MAN MAN MAN MAN MAN 0.589744 0.868421
33 FUB AHR AHR 0.583333 0.857143
34 AHR AHR AHR AHR AHR AHR 0.583333 0.857143
35 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.561798 0.733333
36 FUB AHR 0.559322 0.857143
37 AHR AHR 0.559322 0.857143
38 BMA MAN MAN MAN MAN 0.546667 1
39 BMA BMA GLA BMA BMA 0.540541 1
40 GLC BGC BGC BGC BGC BGC BGC 0.530303 1
41 BGC BGC BGC GLC BGC BGC 0.530303 1
42 1GN ACY GAL ACY 1GN BGC GAL BGC 0.528736 0.6875
43 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.528736 0.6875
44 AML MAN MAN MAN MAN MAN MAN MAN MAN 0.528736 0.825
45 NAG NAG BMA MAN MAN 0.52809 0.6875
46 M5G 0.525773 0.6875
47 LB2 0.52381 1
48 M3M 0.52381 1
49 NGR 0.52381 1
50 MAN GLC 0.52381 1
51 BMA NGT MAN MAN 0.523256 0.66
52 GLA GAL GAL 0.521739 1
53 GAL GAL SO4 0.513889 0.66
54 NAG BMA MAN MAN MAN MAN 0.511364 0.733333
55 MAN MMA 0.507692 0.942857
56 BGC BGC BGC BGC BGC BGC BGC BGC 0.493151 1
57 M13 0.484848 0.942857
58 GAL MBG 0.484848 0.942857
59 MDM 0.484848 0.942857
60 WZ5 0.483516 0.702128
61 P3M 0.48 0.767442
62 CBI 0.476923 1
63 GLA GLA 0.476923 1
64 GLC GAL 0.476923 1
65 BGC GAL 0.476923 1
66 BGC BMA 0.476923 1
67 LAT 0.476923 1
68 CBK 0.476923 1
69 MAB 0.476923 1
70 GAL BGC 0.476923 1
71 BMA GAL 0.476923 1
72 N9S 0.476923 1
73 MAL 0.476923 1
74 B2G 0.476923 1
75 GLA GAL 0.476923 1
76 LBT 0.476923 1
77 BQZ 0.47541 0.909091
78 NAG NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.470588 0.6875
79 NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.469388 0.673469
80 MAN MAN MAN GLC 0.466667 1
81 OPM MAN MAN 0.4625 0.804878
82 BMA MAN MAN MAN 0.452055 1
83 BGC BGC BGC BGC 0.449275 1
84 CE6 0.449275 1
85 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.449275 1
86 MAN BMA BMA BMA BMA 0.449275 1
87 BMA MAN BMA 0.449275 1
88 MT7 0.449275 1
89 MAN MAN BMA BMA BMA BMA 0.449275 1
90 MAN BMA BMA 0.449275 1
91 MLR 0.449275 1
92 GLC BGC BGC BGC BGC 0.449275 1
93 BGC GLC GLC 0.449275 1
94 DXI 0.449275 1
95 BGC BGC BGC BGC BGC 0.449275 1
96 GLC BGC GLC 0.449275 1
97 BMA BMA BMA BMA BMA 0.449275 1
98 GLA GAL BGC 0.449275 1
99 GLC BGC BGC BGC 0.449275 1
100 CEY 0.449275 1
101 BGC GLC GLC GLC GLC GLC GLC 0.449275 1
102 B4G 0.449275 1
103 CE5 0.449275 1
104 GLC BGC BGC 0.449275 1
105 GLC GLC BGC 0.449275 1
106 CTT 0.449275 1
107 BMA BMA BMA BMA BMA BMA 0.449275 1
108 BGC BGC BGC 0.449275 1
109 GLC GLC GLC GLC GLC 0.449275 1
110 CEX 0.449275 1
111 BGC BGC GLC 0.449275 1
112 GLC GAL GAL 0.449275 1
113 GLC BGC BGC BGC BGC BGC 0.449275 1
114 BGC BGC BGC GLC 0.449275 1
115 CT3 0.449275 1
116 CE8 0.449275 1
117 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.449275 1
118 GAL GAL GAL 0.449275 1
119 BGC GLC GLC GLC GLC 0.449275 1
120 MTT 0.449275 1
121 MAN BMA BMA BMA BMA BMA 0.449275 1
122 CTR 0.449275 1
123 BGC BGC BGC BGC BGC BGC 0.449275 1
124 BMA BMA BMA 0.449275 1
125 BGC GLC GLC GLC 0.449275 1
126 GLA GAL GLC 0.449275 1
127 KDO MAN MAN MAN MAN MAN 0.446602 0.868421
128 NAG MAN MAN 0.440476 0.733333
129 2M4 0.439394 1
130 NAG NAG BMA MAN MAN MAN MAN 0.433962 0.634615
131 STW 0.43038 0.891892
132 MAN MAN MAN MAN MAN MAN MAN MAN 0.430108 0.846154
133 GAL FUC 0.428571 0.941176
134 CGC 0.424658 0.941176
135 TRE 0.423729 1
136 GAL BGC NAG GAL 0.423529 0.733333
137 6SA 0.423077 0.733333
138 GLA EGA 0.422535 0.942857
139 GAL BGC BGC XYS 0.421687 0.942857
140 NAG MAN MAN MAN NAG GAL NAG GAL 0.42 0.673469
141 MAN BMA NAG NAG MAN NAG GAL GAL 0.42 0.673469
142 GLA GAL NAG 0.419753 0.733333
143 MAN BMA NAG 0.419753 0.733333
144 NAG A2G GAL 0.418605 0.6875
145 RAF 0.417722 0.891892
146 BMA BMA MAN 0.416667 1
147 MAN MAN BMA 0.416667 1
148 IAB 0.414141 0.733333
149 6PZ BGC GAL 1GN 1GN ACY GAL GAL ACY BGC 0.413223 0.611111
150 BGC BGC XYS BGC 0.411765 0.942857
151 BMA Z4Y NAG 0.411111 0.717391
152 MAN MNM 0.410959 0.702128
153 NAG MAN BMA MAN NAG GAL 0.41 0.6875
154 XYS BGC BGC XYS BGC XYS BGC BGC BGC 0.409091 0.942857
155 XYS BGC BGC BGC BGC XYS BGC BGC BGC 0.409091 0.942857
156 BGC BGC BGC XYS BGC BGC 0.409091 0.942857
157 U63 0.408451 0.891892
158 XYT 0.407895 0.767442
159 FUC GLA GLA 0.402597 0.970588
160 GLA GAL FUC 0.402597 0.970588
161 GAL GAL FUC 0.402597 0.970588
162 GLA GLA FUC 0.402597 0.970588
163 FUC GAL GLA 0.402597 0.970588
164 GAL NAG GAL GLC 0.402299 0.733333
165 BGC GAL NAG GAL 0.402299 0.733333
166 NAG MAN BMA NDG MAN NAG GAL 0.4 0.673469
167 T6P 0.4 0.767442
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2PHX; Ligand: MAN MAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2phx.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2PHX; Ligand: MAN MAN MAN MAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2phx.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
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