Receptor
PDB id Resolution Class Description Source Keywords
2JB1 1.55 Å EC: 1.4.3.2 THE L-AMINO ACID OXIDASE FROM RHODOCOCCUS OPACUS IN COMPLEX WITH L-ALANINE RHODOCOCCUS OPACUS OXIDOREDUCTASE DIMERISATION MODE L-AMINO ACID OXIDASE HYDRIDE TRANSFER MECHANISM GR2-FAMILY FLAVOENZYME REDUCED FAD FAD CONTAINING
Ref.: THE STRUCTURE OF A BACTERIAL L-AMINO ACID OXIDASE FROM RHODOCOCCUS OPACUS GIVES NEW EVIDENCE FOR THE HYDRIDE MECHANISM FOR DEHYDROGENATION J.MOL.BIOL. V. 367 234 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALA A:1490;
B:1490;
Valid;
Valid;
none;
none;
submit data
89.093 C3 H7 N O2 C[C@@...
FAD A:1489;
B:1489;
Valid;
Valid;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2JB2 1.45 Å EC: 1.4.3.2 THE STRUCTURE OF L-AMINO ACID OXIDASE FROM RHODOCOCCUS OPACUS IN COMPLEX WITH L-PHENYLALANINE. RHODOCOCCUS OPACUS SUBSTRATE COMPLEX L-AMINO ACID OXIDASE OXIDOREDUCTASE NON-PLANAR FAD DIMERISATION MODE GR2-FAMILY FLAVOENZYME FAD CONTAINING HYDRIDE TRANSFER MECHANISM
Ref.: THE STRUCTURE OF A BACTERIAL L-AMINO ACID OXIDASE FROM RHODOCOCCUS OPACUS GIVES NEW EVIDENCE FOR THE HYDRIDE MECHANISM FOR DEHYDROGENATION J.MOL.BIOL. V. 367 234 2007
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2JAE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 2JB2 - PHE C9 H11 N O2 c1ccc(cc1)....
3 2JB1 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 2JB3 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2JAE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 2JB2 - PHE C9 H11 N O2 c1ccc(cc1)....
3 2JB1 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 2JB3 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2JAE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 2JB2 - PHE C9 H11 N O2 c1ccc(cc1)....
3 2JB1 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 2JB3 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ALA; Similar ligands found: 18
No: Ligand ECFP6 Tc MDL keys Tc
1 ALA 1 1
2 DAL 1 1
3 VAL 0.611111 0.882353
4 ALO 0.578947 0.789474
5 THR 0.578947 0.789474
6 HGY 0.5625 0.666667
7 ABA 0.526316 0.75
8 DBB 0.526316 0.75
9 AKB 0.526316 0.75
10 LEU 0.5 0.681818
11 ILE 0.5 0.714286
12 NVA 0.434783 0.652174
13 VAH 0.434783 0.6
14 C2N 0.428571 0.636364
15 FLA 0.428571 0.636364
16 DCY 0.428571 0.608696
17 CYS 0.428571 0.608696
18 HL5 0.407407 0.6
Ligand no: 2; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2JB2; Ligand: PHE; Similar sites found with APoc: 24
This union binding pocket(no: 1) in the query (biounit: 2jb2.bio1) has 42 residues
No: Leader PDB Ligand Sequence Similarity
1 2IVD FAD 4.81172
2 3AYI FAD 5.27046
3 3AYI HCI 5.27046
4 5MBX SP5 5.31697
5 5MBX FAD 5.31697
6 1YY5 FAD 5.52147
7 1RSG FAD 5.52147
8 5G3U FDA 5.91017
9 5G3U ITW 5.91017
10 3K7M FAD 6.03248
11 3NKS FAD 6.28931
12 2Z3Y F2N 7.15746
13 3QJ4 FAD 8.47953
14 4IV9 FAD 9.40695
15 5TTJ FAD 9.79592
16 2VVL FAD 28.2209
17 2VVM FAD 28.2209
18 4GUT FAD 37.6278
19 4GUS FAD 37.6278
20 4FWE FAD 37.6278
21 4HSU FAD 37.6278
22 2YG3 FAD 40.0818
23 3X0V FAD 40.2863
24 5TS5 FAD 44.0083
Pocket No.: 2; Query (leader) PDB : 2JB2; Ligand: PHE; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2jb2.bio1) has 42 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2JB2; Ligand: FAD; Similar sites found with APoc: 26
This union binding pocket(no: 3) in the query (biounit: 2jb2.bio1) has 41 residues
No: Leader PDB Ligand Sequence Similarity
1 2IVD FAD 4.81172
2 3AYI HCI 5.27046
3 3AYI FAD 5.27046
4 5MBX FAD 5.31697
5 5MBX SP5 5.31697
6 1YY5 FAD 5.52147
7 1RSG FAD 5.52147
8 5G3U FDA 5.91017
9 5G3U ITW 5.91017
10 3K7M FAD 6.03248
11 3NKS FAD 6.28931
12 2Z3Y F2N 7.15746
13 4ZCC FAD 8.33333
14 4ZCC NAI 8.33333
15 3QJ4 FAD 8.47953
16 4IV9 FAD 9.40695
17 5TTJ FAD 9.79592
18 2VVM FAD 28.2209
19 2VVL FAD 28.2209
20 4GUT FAD 37.6278
21 4GUS FAD 37.6278
22 4FWE FAD 37.6278
23 4HSU FAD 37.6278
24 2YG3 FAD 40.0818
25 3X0V FAD 40.2863
26 5TS5 FAD 44.0083
Pocket No.: 4; Query (leader) PDB : 2JB2; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2jb2.bio1) has 41 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback