Receptor
PDB id Resolution Class Description Source Keywords
2FNU 1.5 Å EC: 2.-.-.- PSEC AMINOTRANSFERASE WITH EXTERNAL ALDIMINE HELICOBACTER PYLORI PROTEIN-PRODUCT COMPLEX STRUCTURAL GENOMICS MONTREAL-KINGSBACTERIAL STRUCTURAL GENOMICS INITIATIVE BSGI TRANSFERASE
Ref.: STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PSEC, AMINOTRANSFERASE INVOLVED IN THE BIOSYNTHESIS OF PS ACID, AN ESSENTIAL FLAGELLAR MODIFICATION IN HELICO PYLORI J.BIOL.CHEM. V. 281 8907 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PMP UD1 A:901;
B:903;
 Valid;
Valid;
 none;
none;
 submit data
818.492 n/a P(=O)...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2FNU 1.5 Å EC: 2.-.-.- PSEC AMINOTRANSFERASE WITH EXTERNAL ALDIMINE HELICOBACTER PYLORI PROTEIN-PRODUCT COMPLEX STRUCTURAL GENOMICS MONTREAL-KINGSBACTERIAL STRUCTURAL GENOMICS INITIATIVE BSGI TRANSFERASE
Ref.: STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PSEC, AMINOTRANSFERASE INVOLVED IN THE BIOSYNTHESIS OF PS ACID, AN ESSENTIAL FLAGELLAR MODIFICATION IN HELICO PYLORI J.BIOL.CHEM. V. 281 8907 2006
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 313 families.
1 2FNU - PMP UD1 n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 277 families.
1 2FNU - PMP UD1 n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 212 families.
1 2FNU - PMP UD1 n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: PMP UD1; Similar ligands found: 33
No: Ligand ECFP6 Tc MDL keys Tc
1 PMP UD1 1 1
2 UDP GAL 0.511628 0.858974
3 4RA 0.506329 0.878049
4 F5G 0.485714 0.848101
5 UD4 0.475177 0.860759
6 F5P 0.475177 0.860759
7 UD1 0.467626 0.848101
8 UD2 0.467626 0.848101
9 UD0 0.463415 0.86747
10 2QR 0.462025 0.914634
11 HP7 0.460993 0.835443
12 UDP UDP 0.459016 0.807692
13 UD7 0.450704 0.848101
14 UAG API 0.440678 0.833333
15 MJZ 0.4375 0.8375
16 UDZ 0.432432 0.809524
17 AWU 0.42963 0.835443
18 UDM 0.422535 0.814815
19 UGA 0.417266 0.822785
20 UGB 0.417266 0.822785
21 EPZ 0.417219 0.860759
22 HWU 0.414966 0.804878
23 12V 0.414966 0.804878
24 EPU 0.414474 0.82716
25 EEB 0.414474 0.85
26 UGF 0.414286 0.783133
27 U21 0.404908 0.813953
28 U20 0.404908 0.813953
29 UMA FGA LYS DAL DAL 0.404255 0.847059
30 UDP 0.401575 0.7875
31 GDU 0.40146 0.835443
32 UPG 0.40146 0.835443
33 UFM 0.40146 0.835443
Similar Ligands (3D)
Ligand no: 1; Ligand: PMP UD1; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2FNU; Ligand: PMP UD1; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 2fnu.bio1) has 37 residues
No: Leader PDB Ligand Sequence Similarity
1 2PO3 T4K 44.2667
2 2PO3 T4K 44.2667
Pocket No.: 2; Query (leader) PDB : 2FNU; Ligand: PMP UD1; Similar sites found with APoc: 2
This union binding pocket(no: 2) in the query (biounit: 2fnu.bio1) has 37 residues
No: Leader PDB Ligand Sequence Similarity
1 2PO3 T4K 44.2667
2 2PO3 T4K 44.2667
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