Receptor
PDB id Resolution Class Description Source Keywords
2FKW 2.45 Å NON-ENZYME: OTHER STRUCTURE OF LH2 FROM RPS. ACIDOPHILA CRYSTALLIZED IN LIPIDI MESOPHASES RHODOBLASTUS ACIDOPHILUS LIGHT HARVESTING COMPLEX B800-B850 LIPIDIC MESOPHASE CRYSTALLIZATION CUBIC PHASE SPONGE PHASE LDAO RHODOPIN CAROTENOID MEMBRANE PROTEIN PHOTOSYNTHESIS
Ref.: ROOM TO MOVE: CRYSTALLIZING MEMBRANE PROTEINS IN SW LIPIDIC MESOPHASES J.MOL.BIOL. V. 357 1605 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BCL A:1501;
A:1701;
B:1601;
C:1502;
C:1702;
D:1602;
E:1503;
E:1703;
F:1603;
G:1504;
G:1704;
H:1604;
I:1505;
I:1705;
J:1605;
K:1506;
K:1706;
L:1606;
M:1507;
M:1707;
N:1607;
O:1508;
O:1708;
P:1608;
R:1509;
R:1709;
S:1609;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
911.504 C55 H74 Mg N4 O6 CC[C@...
LDA A:1816;
A:1817;
B:1801;
C:1815;
C:1821;
D:1802;
E:1822;
E:1823;
F:1803;
G:1814;
G:1824;
H:1804;
I:1812;
I:1813;
I:1825;
J:1805;
K:1810;
K:1826;
L:1806;
M:1811;
M:1827;
N:1807;
O:1820;
P:1808;
R:1809;
R:1818;
R:1819;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
229.402 C14 H31 N O CCCCC...
RG1 D:1402;
F:1403;
H:1404;
J:1405;
L:1406;
N:1407;
P:1408;
R:1401;
S:1409;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
715.013 C46 H66 O6 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2FKW 2.45 Å NON-ENZYME: OTHER STRUCTURE OF LH2 FROM RPS. ACIDOPHILA CRYSTALLIZED IN LIPIDI MESOPHASES RHODOBLASTUS ACIDOPHILUS LIGHT HARVESTING COMPLEX B800-B850 LIPIDIC MESOPHASE CRYSTALLIZATION CUBIC PHASE SPONGE PHASE LDAO RHODOPIN CAROTENOID MEMBRANE PROTEIN PHOTOSYNTHESIS
Ref.: ROOM TO MOVE: CRYSTALLIZING MEMBRANE PROTEINS IN SW LIPIDIC MESOPHASES J.MOL.BIOL. V. 357 1605 2006
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RG1; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 RG1 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: 16
This union binding pocket(no: 1) in the query (biounit: 2fkw.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1J78 OLA 0.001796 0.44769 None
2 1UO5 PIH 0.01496 0.44305 None
3 2PEH LYS ARG LYS SER ARG TRP ASP GLU THR PRO 0.01939 0.40871 None
4 4XCP PLM 0.03526 0.40718 None
5 4MGA 27L 0.03142 0.40639 None
6 1RL4 BL5 0.03771 0.40598 None
7 1L0I PSR 0.04253 0.40261 None
8 4DR9 BB2 0.01851 0.40238 None
9 1XM4 PIL 0.009964 0.41912 3.77358
10 1XMU ROF 0.01193 0.41151 3.77358
11 4J26 EST 0.02303 0.40128 9.43396
12 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 0.04428 0.40849 14.6341
13 5OCA 9QZ 0.007083 0.44384 15.0943
14 1EM6 CP4 0.04349 0.40073 15.0943
15 3L1N PLM 0.02406 0.41203 20.7547
16 2DYR PGV 0.005089 0.40818 24.3902
Pocket No.: 2; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2fkw.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2fkw.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2fkw.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2fkw.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2fkw.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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