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Receptor
PDB id Resolution Class Description Source Keywords
2EFE 2.08 Å NON-ENZYME: OTHER ARA7-GDPNH2/ATVPS9A ARABIDOPSIS THALIANA GEF GTPASE VPS9 RAB5 NUCLEOTIDE TRANSPORT PROTEIN
Ref.: GDP-BOUND AND NUCLEOTIDE-FREE INTERMEDIATES OF THE NUCLEOTIDE EXCHANGE IN THE RAB5/VPS9 SYSTEM J.BIOL.CHEM. V. 285 36689 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNH B:1200;
D:2200;
Valid;
Valid;
none;
none;
submit data
442.216 C10 H16 N6 O10 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2EFE 2.08 Å NON-ENZYME: OTHER ARA7-GDPNH2/ATVPS9A ARABIDOPSIS THALIANA GEF GTPASE VPS9 RAB5 NUCLEOTIDE TRANSPORT PROTEIN
Ref.: GDP-BOUND AND NUCLEOTIDE-FREE INTERMEDIATES OF THE NUCLEOTIDE EXCHANGE IN THE RAB5/VPS9 SYSTEM J.BIOL.CHEM. V. 285 36689 2010
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2EFE - GNH C10 H16 N6 O10 P2 c1nc2c(n1[....
2 4G01 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 2EFH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2EFE - GNH C10 H16 N6 O10 P2 c1nc2c(n1[....
2 4G01 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 2EFH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2EFE - GNH C10 H16 N6 O10 P2 c1nc2c(n1[....
2 4G01 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 2EFH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNH; Similar ligands found: 144
No: Ligand ECFP6 Tc MDL keys Tc
1 GNH 1 1
2 GP3 0.87013 0.961039
3 GDP 0.858974 0.986667
4 GSP 0.829268 0.936709
5 GTP 0.82716 0.986667
6 GCP 0.817073 0.961039
7 G1R 0.817073 0.973684
8 GNP 0.807229 0.986842
9 9GM 0.807229 0.986842
10 5GP 0.794872 0.973333
11 G 0.794872 0.973333
12 GMV 0.783133 0.961039
13 G2R 0.761364 0.948718
14 GP2 0.746988 0.948718
15 GKE 0.73913 0.948718
16 GDD 0.73913 0.948718
17 GDC 0.73913 0.948718
18 GPG 0.733333 0.948718
19 GAV 0.727273 0.948718
20 G2P 0.724138 0.948718
21 Y9Z 0.72043 0.891566
22 GTG 0.712766 0.925
23 GDR 0.712766 0.948718
24 GFB 0.712766 0.948718
25 6CK 0.705263 0.925
26 G3A 0.705263 0.961039
27 ALF 5GP 0.701149 0.878049
28 G5P 0.697917 0.961039
29 YGP 0.691489 0.890244
30 GKD 0.690722 0.948718
31 JB2 0.690722 0.948718
32 GPD 0.683673 0.91358
33 GDX 0.683673 0.961039
34 GMP 0.675325 0.868421
35 GDP ALF 0.673913 0.878049
36 ALF GDP 0.673913 0.878049
37 GDP AF3 0.673913 0.878049
38 JB3 0.650485 0.936709
39 G3D 0.648352 0.973333
40 NGD 0.644231 0.948718
41 G4P 0.634409 0.973333
42 U2G 0.628571 0.925
43 FEG 0.628571 0.869048
44 G G 0.626263 0.935897
45 2MD 0.626168 0.880952
46 0O2 0.625 0.973333
47 MGD 0.623853 0.880952
48 ZGP 0.622642 0.858824
49 CG2 0.616822 0.925
50 GDP 7MG 0.613861 0.9
51 CAG 0.609091 0.892857
52 3GP 0.604651 0.934211
53 PGD 0.60177 0.91358
54 MD1 0.587719 0.880952
55 TPG 0.577586 0.831461
56 DBG 0.577586 0.961538
57 2GP 0.568182 0.947368
58 FE9 0.565217 0.787234
59 GH3 0.556701 0.960526
60 GCP G 0.554455 0.909091
61 A G 0.548673 0.923077
62 GPX 0.545455 0.934211
63 U A G G 0.54386 0.923077
64 DGI 0.542553 0.911392
65 IDP 0.537634 0.96
66 DGT 0.536082 0.911392
67 G A A A 0.535088 0.911392
68 PGD O 0.533333 0.840909
69 G4M 0.531746 0.870588
70 AN2 0.527473 0.921053
71 BGO 0.526786 0.9125
72 G1R G1R 0.525 0.9125
73 P2G 0.521739 0.871795
74 G1G 0.516949 0.91358
75 R5I 0.515464 0.934211
76 R7I 0.515464 0.934211
77 AKW 0.513274 0.879518
78 GGM 0.513043 0.91358
79 GPC 0.5 0.869048
80 MGP 0.5 0.948718
81 G U 0.495652 0.888889
82 6G0 0.494949 0.948718
83 P1G 0.494737 0.860759
84 DGP 0.494624 0.898734
85 DG 0.494624 0.898734
86 G C 0.487179 0.888889
87 IMP 0.483871 0.946667
88 G2Q 0.466667 0.948718
89 GTA 0.464286 0.925
90 G7M 0.463158 0.935897
91 G G G RPC 0.462185 0.864198
92 G G G C 0.451613 0.901235
93 A2D 0.451613 0.883117
94 A G C C 0.448 0.9
95 AT4 0.447917 0.873418
96 APC G U 0.447154 0.875
97 SGP 0.443299 0.817073
98 BA3 0.442105 0.883117
99 C2E 0.44 0.909091
100 35G 0.44 0.921053
101 PCG 0.44 0.921053
102 B4P 0.4375 0.883117
103 AP5 0.4375 0.883117
104 ADP 0.4375 0.907895
105 ANP 0.435644 0.909091
106 5GP 5GP 0.435644 0.871795
107 G C C C 0.434109 0.9125
108 G U34 0.433333 0.878049
109 AGS 0.43 0.8625
110 SAP 0.43 0.8625
111 M33 0.428571 0.871795
112 UCG 0.426357 0.9
113 ATP 0.424242 0.907895
114 HEJ 0.424242 0.907895
115 ACP 0.424242 0.884615
116 ACQ 0.421569 0.884615
117 A1R 0.420561 0.829268
118 AR6 0.42 0.883117
119 AQP 0.42 0.907895
120 APR 0.42 0.883117
121 5FA 0.42 0.907895
122 01G 0.419643 0.891566
123 DG DG 0.418182 0.855422
124 A G U 0.416058 0.878049
125 AD9 0.415842 0.884615
126 CA0 0.414141 0.884615
127 ATF 0.413462 0.873418
128 HFD 0.411765 0.8625
129 MGO 0.409524 0.853659
130 6YZ 0.409524 0.884615
131 MGQ 0.407407 0.924051
132 ADQ 0.407407 0.860759
133 A4P 0.404959 0.858824
134 7DD 0.40404 0.894737
135 93A 0.40404 0.845238
136 5AL 0.403846 0.871795
137 6AD 0.403846 0.831325
138 AMZ 0.402174 0.906667
139 C2R 0.402174 0.894737
140 A22 0.401869 0.896104
141 A G U U 0.401408 0.878049
142 ITT 0.4 0.857143
143 ADX 0.4 0.8
144 AGO 0.4 0.901235
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2EFE; Ligand: GNH; Similar sites found with APoc: 479
This union binding pocket(no: 1) in the query (biounit: 2efe.bio2) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 4WOP CTP 1.77778
2 4AG5 ADP 1.87266
3 5WQP NCA 2.13675
4 2QG6 NMN 2.20994
5 4KBF AMP 2.62172
6 2C9O ADP 2.62172
7 1CR1 TTP 2.62172
8 1Q20 PLO 2.62172
9 1Q20 A3P 2.62172
10 2B8T THM 2.69058
11 5I34 GDP 2.76243
12 2V2V V12 2.76243
13 1G3M PCQ 2.76243
14 1G3M A3P 2.76243
15 2PL3 ADP 3.31492
16 2ZR9 DTP 3.31492
17 1SQ5 ADP 3.31492
18 1F5N GNP 3.31492
19 3BOS CDP 3.31492
20 2B8W ALF 5GP 3.31492
21 1VKJ A3P 3.31492
22 5A1S FLC 3.31492
23 2WHX ADP 3.37079
24 3DC4 ADP 3.37079
25 3BFV ADP 3.37079
26 3FWY ADP 3.37079
27 2JLR ANP 3.37079
28 1YXM ADE 3.37079
29 5GVR LMR 3.4188
30 1YRB GDP 3.43511
31 5TIV A3P 3.55731
32 1Z83 AP5 3.57143
33 5LB3 ADP 3.74532
34 4ZNL BEF ADP 3.74532
35 2FAH GDP 3.74532
36 5BYK A3P 3.861
37 5BYK OAQ 3.861
38 2C78 GNP 3.8674
39 2C77 GNP 3.8674
40 4H1V GNP 3.8674
41 1P72 ADP 3.8674
42 3DKP ADP 3.8674
43 1XMV ADP 3.8674
44 3H86 AP5 3.8674
45 1XX6 ADP 3.8674
46 3DZD ADP 3.8674
47 1SVM ATP 3.8674
48 1NN5 2DT 3.8674
49 1NN5 ANP 3.8674
50 1T8U UAP SGN IDS SGN 3.8674
51 1T8U A3P 3.8674
52 2RGX AP5 3.8835
53 1OE0 TTP 3.91304
54 5UIV ADP 3.96476
55 2CHG ANP 3.9823
56 4RD0 GDP 4.11985
57 1YQT ADP 4.11985
58 5YV5 ADP 4.11985
59 4FCW ADP 4.11985
60 4LJ9 ACP 4.11985
61 4UXH T5A 4.34783
62 1ONI BEZ 4.34783
63 5L3W GDP 4.41989
64 1G41 ADP 4.41989
65 1JJV ATP 4.41989
66 4GOX A3P 4.41989
67 1U0J ADP 4.41989
68 4R2I ANP 4.41989
69 2GWH A3P 4.41989
70 5MEX SZZ 4.41989
71 6CI9 F3V 4.41989
72 5MEX PAP 4.41989
73 3IIJ ADP 4.44444
74 1E2K TMC 4.49438
75 1XP8 AGS 4.49438
76 1FNN ADP 4.49438
77 2I4I AMP 4.49438
78 4ZDJ UTP 4.49438
79 1ION ADP 4.52675
80 5U32 GDP 4.66102
81 6AIC AMP 4.6729
82 2P3V SRT 4.6875
83 4QRH 0O2 4.7619
84 5WRJ A3P 4.86891
85 5WRI A3P 4.86891
86 4LPS GDP 4.95868
87 1BG2 ADP 4.97238
88 2Y65 ADP 4.97238
89 1JI0 ATP 4.97238
90 4PX9 ADP 4.97238
91 1IWE IMP 4.97238
92 3VX3 ADP 4.97238
93 1LVK MNT BEF 4.97238
94 4TMK T5A 4.97238
95 3ITJ CIT 4.97238
96 1PVN MZP 4.97238
97 1NST A3P 4.97238
98 6CAM BGC 4.97238
99 2JJK R15 4.97238
100 1OAA OAA 5.01931
101 1Z6T ADP 5.07614
102 1T5C ADP 5.24345
103 4IHQ ADP 5.24345
104 1X9I G6Q 5.24345
105 3MWL 8OX 5.31401
106 3A1S GDP 5.42636
107 3KTA AP5 5.49451
108 1GXU 2HP 5.49451
109 3UIE ANP 5.5
110 4DCT GDP 5.52486
111 1JJ7 ADP 5.52486
112 2WIC GNP 5.52486
113 5TSH ADP 5.52486
114 5ZXD ATP 5.52486
115 5TSH ANP 5.52486
116 1FP6 ADP 5.52486
117 1ZIN AP5 5.52486
118 3FB4 AP5 5.52486
119 4IOK XPO 5.52486
120 4IOK ADP 5.52486
121 2IXE ATP 5.52486
122 2D2F ADP 5.52486
123 2Z5F A3P 5.52486
124 2BO4 FLC 5.52486
125 1X8J A3P 5.52486
126 6ACS CIT 5.52486
127 2PEZ GGZ 5.58659
128 2PEZ DAT 5.58659
129 2DPY ADP 5.61798
130 3AB4 THR 5.61798
131 4UTG ANP 5.61798
132 1G8S MET 5.65217
133 2ZE7 DST 5.92885
134 2ZE7 AMP 5.92885
135 1BO4 COA 5.95238
136 2XT3 ADP 5.99251
137 6CS8 F9Y 5.99251
138 4BFW ZVW 5.99251
139 2W58 ADP 6.07735
140 2OFW ADX 6.07735
141 1AKY AP5 6.07735
142 1R6B ADP 6.07735
143 4X8O AP5 6.07735
144 3QXC ATP 6.07735
145 2J5V PCA 6.07735
146 2ORV 4TA 6.07735
147 3QVV 3QV 6.07735
148 3QVV A3P 6.07735
149 1M7G AV2 6.16114
150 1M7G ADX 6.16114
151 1M7G ADP 6.16114
152 1TQ4 GDP 6.36704
153 4PFO ADP 6.36704
154 5AK0 8V1 6.36704
155 2BIF ANP 6.36704
156 2BIF SIN 6.36704
157 2D7D ADP 6.36704
158 1XEX ATP 6.39535
159 6B8B ADP 6.4257
160 2QN6 GDP 6.45161
161 1F9V ADP 6.62824
162 5FG3 GDP 6.62983
163 4P4T GDP 6.62983
164 2ZFI ADP 6.62983
165 4KFU ACP 6.62983
166 3WXM GTP 6.62983
167 2CDN ADP 6.62983
168 4NON GDP 6.62983
169 3B7G ANP 6.62983
170 5MZN ADP 6.62983
171 1IN4 ADP 6.62983
172 1UJ2 ADP 6.62983
173 2JAQ DCP 6.62983
174 3QKT ANP 6.62983
175 1RJW ETF 6.62983
176 1UJ2 C5P 6.62983
177 1SVI GDP 6.66667
178 1V8K ANP 6.74157
179 1GHE ACO 6.77966
180 1OFH ADP 6.89655
181 1K6M AGS 7.11611
182 1WMA NDP 7.11611
183 1WMA AB3 7.11611
184 1D8T GDP 7.18232
185 2BVN GNP 7.18232
186 6G14 G4P 7.18232
187 1TAD GDP 7.18232
188 1TAD ALF 7.18232
189 6AU6 GDP 7.18232
190 1RRC ADP 7.18232
191 1B0U ATP 7.18232
192 1Y3A GDP 7.18232
193 2Q2Y ADP 7.18232
194 2Q2Y MKR 7.18232
195 1CS4 GSP 7.18232
196 2ODE ALF GDP 7.18232
197 1SVK ALF GDP 7.18232
198 1OS1 ATP 7.18232
199 1S3G AP5 7.18232
200 1BH2 GSP 7.18232
201 1OS1 PYR 7.18232
202 4MKG AP5 7.18232
203 2ZPA ADP 7.18232
204 1UKZ ADP 7.18232
205 5NM7 GLY 7.18232
206 5X40 ACP 7.18232
207 4A4Z ANP 7.18232
208 4WOH 4NP 7.22892
209 3EC1 GDP 7.49064
210 4HSE ADP 7.49064
211 2NCD ADP 7.49064
212 3P4X ADP 7.49064
213 3RC3 ANP 7.49064
214 5L3R GCP 7.50853
215 1LVG ADP 7.57576
216 3F81 STT 7.65027
217 3NHB ADP 7.73481
218 1H65 GDP 7.73481
219 1W0J ADP 7.73481
220 4MKF AP5 7.73481
221 4IDN GNP 7.73481
222 3ZQ6 ADP ALF 7.73481
223 1W0J ADP BEF 7.73481
224 2V58 LZJ 7.73481
225 1ZUI SKM 7.7381
226 2RCN GDP 7.86517
227 1WF3 GNP 7.86517
228 2QEN ADP 7.86517
229 2GJ8 ALF GDP 8.13953
230 2OG2 MLI 8.2397
231 3B9Q MLI 8.2397
232 2GKS ADP 8.2397
233 1AQU A3P 8.2397
234 1QF9 C5P 8.24742
235 1QF9 ADP 8.24742
236 1QF9 ALF 8.24742
237 3MD0 GDP 8.28729
238 2AWN ADP 8.28729
239 3TK1 GDP 8.28729
240 6C90 ADP 8.28729
241 2QQ0 ANP 8.28729
242 2QQ0 THM 8.28729
243 2QQ0 TMP 8.28729
244 2QQ0 ADP 8.28729
245 2GMV UN8 8.28729
246 1NHX FTB 8.28729
247 1NHX PEP 8.28729
248 2GMV PEP 8.28729
249 2IYL GDP 8.4507
250 3E70 GDP 8.53659
251 1PUJ GNP 8.61423
252 1QF5 GDP 8.61423
253 1QF5 RPL 8.61423
254 4CVN ADP 8.75912
255 1F2U ATP 8.78378
256 2HCJ GDP 8.83978
257 1KK1 GNP 8.83978
258 2FSH ANP 8.83978
259 4TQK NAG 8.83978
260 1L2T ATP 8.83978
261 5HR5 ADP 8.98876
262 1D2N ANP 8.98876
263 2KIN ADP 9
264 1NJF ADP 9.2
265 1NJF AGS 9.2
266 4NU0 AP5 9.21659
267 1GOJ ADP 9.3633
268 5L3V GDP 9.3633
269 5L3S GNP 9.3633
270 4LC1 GDP 9.39227
271 1DAR GDP 9.39227
272 4NE2 SH2 9.39227
273 4NE2 ADP 9.39227
274 5I0H ADP BEF 9.39227
275 3BFX A3P 9.39227
276 3G5N PB2 9.39227
277 1KO8 6PG 9.71429
278 1D2E GDP 9.73783
279 3FYH ADP 9.73783
280 4OI4 ATP 9.73783
281 2GDJ ANP 9.84848
282 5HCN GCP 9.94475
283 4YMU ATP 9.94475
284 4Q1A 2XZ 9.94475
285 4Q1A UDP 9.94475
286 2CE7 ADP 9.94475
287 5XKT GNP 9.94475
288 3A4M ADP 10
289 3QF7 ANP 10
290 3MGB PAP 10.0313
291 3KJI ADP 10.2362
292 2XAU ADP 10.4869
293 2VVG ADP 10.4972
294 2XTZ GSP 10.4972
295 1G6O ADP 10.4972
296 1P9B GDP 10.4972
297 4D81 ADP 10.4972
298 1W4R TTP 10.4972
299 4ZG4 VO4 ADP 10.4972
300 1W5T ANP 10.4972
301 1W5T ADP 10.4972
302 1G3Q ADP 10.5485
303 3PQC GDP 10.7692
304 1RJ9 GCP 10.8553
305 4PJ3 ANP 10.8614
306 1B7T ADP 10.8974
307 4AG9 COA 10.9091
308 1G6H ADP 11.0497
309 4WZA ADP 11.0497
310 4WZA ACP 11.0497
311 3BER AMP 11.0497
312 4ITM ATP 11.1111
313 2WJG GDP 11.1702
314 2ZFZ ARG 11.3924
315 4M6T SAM 11.4754
316 3B5J 12D 11.5226
317 1FQK GDP 11.5646
318 4U00 ADP 11.6022
319 3AB3 GDP 11.6022
320 4R43 GDP 11.6022
321 1IHU AF3 11.6022
322 3HU3 AGS 11.6022
323 1IHU ADP 11.6022
324 3TMK T5A 11.6022
325 4YS0 ADP 11.6022
326 2BEK ATP 11.6022
327 4TL6 ANP 11.6022
328 1X6V ADP 11.6105
329 1W7J ADP BEF 11.6105
330 1Q19 SSC 11.6105
331 1FQJ GDP 11.9048
332 5EXT ADP 11.9231
333 6B4K ANP 11.985
334 3IUY AMP 12.1547
335 2ZJ5 ADP 12.1547
336 1KK8 BEF ADP 12.2302
337 2B4D COA 12.2807
338 4IEE AGS 12.3596
339 5C2F JTH 12.3596
340 3VM7 GLC 12.3596
341 2F3R G5P 12.5604
342 2WJH GDP 12.6506
343 2WJH FLC 12.6506
344 5BQ5 ADP BEF 12.6984
345 1SKQ GDP 12.7072
346 5BN3 ADP 12.7072
347 2XTN GTP 12.7072
348 3CX8 GSP 12.7072
349 5Z69 AGS 12.7072
350 5Y6N ADP 12.7341
351 4GBM A3P 12.7341
352 3BD9 A3P 12.7341
353 2HF9 GSP 12.8319
354 2V7Q ATP 13.0137
355 2CK3 ANP 13.0137
356 2V7Q ADP 13.0137
357 2CK3 ADP 13.0137
358 1NY5 ADP 13.1086
359 3TBK ANP 13.2597
360 2IS6 ADP 13.2597
361 6DEF GCP 13.2597
362 1YTM ATP 13.2597
363 1DAK ADP 13.3929
364 1DAK DPU 13.3929
365 5CK5 GDP 13.8122
366 3DEF GDP 13.8122
367 1VHT BA3 13.8122
368 4TO8 FLC 13.8122
369 1HFE CYS 13.8211
370 1QHH ATP 13.913
371 4QM7 GTP 14.0351
372 4XTR ADP 14.1243
373 4XTR ATP 14.1243
374 4XVU ATP 14.1243
375 3ZS9 ADP ALF 14.1243
376 2WOJ ADP ALF 14.1243
377 1XKV ATP 14.3646
378 5N69 ADP 14.6067
379 5M04 GDP 14.9171
380 3FVQ ATP 14.9171
381 2VB6 ADP BEF 14.9171
382 3H4S ADP 15.4696
383 4FRZ ADP 15.4696
384 5ZB0 ADP 15.4696
385 5ZB0 TYD 15.4696
386 4R98 GNH 15.4982
387 4HI0 GDP 15.5779
388 1G7C 5GP 15.9574
389 3COB ADP 16.0221
390 2WZF BGC 16.0221
391 2VWT PYR 16.0221
392 2GK6 ADP 16.4794
393 2OM2 GDP 16.6667
394 4BQS K2Q 17.0455
395 4BQS ADP 17.0455
396 3ZFD ANP 17.1271
397 5KDO GDP 17.5676
398 2O0J ADP 17.6796
399 1GOT GDP 17.8082
400 1GP2 GDP 18.3099
401 6CRK GDP 18.3099
402 2YOH WMJ 18.7845
403 2ZPT A3P 19.1011
404 4B47 GDP 19.337
405 1OYY AGS 19.337
406 3RLF ANP 19.8895
407 5KSP GDP 20.442
408 5KSZ GCP 20.442
409 3W5J GDP 20.9945
410 3ZIA ATP 21.547
411 3ZIA ADP 21.547
412 5KUT GDP 22.0994
413 4NCN GTP 22.0994
414 4QOS ADP 22.0994
415 1YZG GDP 22.905
416 1NRJ GTP 23.8532
417 2QTV GNP 23.9521
418 1MKY GDP 24.8619
419 1ZJ6 G3D 24.8619
420 1M2O GNP 24.8619
421 5ZBR ANP 24.8619
422 5YT0 GDP 25.4144
423 4TTQ ATP 26.0465
424 1FZQ GDP 27.0718
425 1OXV ANP 27.6243
426 4HUT ATP 27.6243
427 4M9Q GNP 28.7293
428 2QZ4 ADP 28.7293
429 1KSH GDP 29.2818
430 1UPT GTP 30.4094
431 4BAS GNP 31.1558
432 4V0K GDP 32.5444
433 1R4A GNP 32.7273
434 1J2J GTP 33.7349
435 1O3Y GTP 33.7349
436 2FH5 GTP 34.2541
437 1RE0 GDP 34.7561
438 1S9D GDP 34.7561
439 1F6B GDP 35.9116
440 2A5F GTP 36
441 2ZEJ GDP 37.5691
442 1M7B GTP 38.1215
443 1GWN GTP 38.1215
444 4WZ6 ATP 38.674
445 1G7S GDP 39.2265
446 1ZD9 GDP 40.884
447 1MR3 G3D 41.4365
448 3REF GDP 41.9889
449 2WKQ GTP 43.0939
450 5UPK GNP 43.0939
451 1E96 GTP 43.6464
452 2NGR GDP 43.6464
453 1GRN GDP 43.6464
454 4DID GDP 43.6464
455 4ITR GDP 43.6464
456 3T1O GDP 43.6464
457 3T12 GDP ALF 43.6464
458 1I4D GDP 44.1989
459 1A4R GNH 44.1989
460 1A4R GDP 44.1989
461 3SBD GNP 44.1989
462 1G4U GDP 44.7514
463 1MH1 GNP 44.7514
464 2FJU GSP 44.9438
465 3T5G GDP 45.3039
466 1RYH GNP 45.3039
467 1HE1 GDP 45.4545
468 1NF3 GNP 45.8564
469 6BSX GDP 46.0674
470 6BSX E7S 46.0674
471 1DS6 GDP 46.4088
472 2J0V GDP 46.4088
473 2W2X GSP 48.0663
474 3Q85 GNP 48.5207
475 1KMQ GNP 48.6188
476 4U5X GNP 48.8764
477 1OW3 GDP 49.1713
478 5HPY GDP 49.1713
479 2G77 GDP 49.7238
Pocket No.: 2; Query (leader) PDB : 2EFE; Ligand: GNH; Similar sites found with APoc: 22
This union binding pocket(no: 2) in the query (biounit: 2efe.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 5AHO TLA 2.76243
2 1TE2 PGA 2.76243
3 5CDH TLA 3.8674
4 5H4S RAM 4.41989
5 4NMC FAD 4.41989
6 1GU3 BGC BGC BGC BGC BGC 4.69799
7 1VBO MAN MAN MAN 4.69799
8 1QHG ATP 5.52486
9 3CL7 HYN 5.52486
10 1T3D CYS 8.28729
11 3E9I XAH 8.61423
12 4H6Q TFB 8.83978
13 4JLS 3ZE 9.86842
14 4B1M FRU FRU 11.0497
15 1DCP HBI 11.5385
16 5XQL C2E 11.6022
17 6BKA FMN 11.6022
18 4ADC PLP 12.7072
19 3ABI NAD 13.8577
20 4Q4K FMN 15.4696
21 5TCI MLI 18.7845
22 2BOS GLA GAL GLC 33.8235
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