Receptor
PDB id Resolution Class Description Source Keywords
2DVA 2.2 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF PEANUT LECTIN GAL-BETA-1,3-GALNAC- ALPHA-O-ME (METHYL-T-ANTIGEN) COMPLEX ARACHIS HYPOGAEA LEGUME LECTIN AGGLUTININ OPEN QUATERNARY STRUCTURE CARBOHYDRATE SPECIFICITY SUGAR BINDING PROTEIN
Ref.: STRUCTURAL STUDIES ON PEANUT LECTIN COMPLEXED WITH DISACCHARIDES INVOLVING DIFFERENT LINKAGES: FURTHER INSIGHTS INTO THE STRUCTURE AND INTERACTIONS OF THE LECTIN ACTA CRYSTALLOGR.,SECT.D V. 62 1413 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:237;
B:237;
C:237;
D:237;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
40.078 Ca [Ca+2...
GAL MGC A:239;
B:239;
C:239;
D:239;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
397.377 n/a O=C(N...
MN A:238;
B:238;
C:238;
D:238;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
54.938 Mn [Mn+2...
SO4 B:2236;
C:1236;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2PEL 2.25 Å NON-ENZYME: BINDING PEANUT LECTIN ARACHIS HYPOGAEA LEGUME LECTIN OPEN QUATERNARY STRUCTURE CARBOHYDRATE SPECIPROTEIN CRYSTALLOGRAPHY AGGLUTININ LECTIN (AGGLUTININ)
Ref.: CONFORMATION, PROTEIN-CARBOHYDRATE INTERACTIONS AND SUBUNIT ASSOCIATION IN THE REFINED STRUCTURE OF PEA LECTIN-LACTOSE COMPLEX. J.MOL.BIOL. V. 259 281 1996
Members (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2DVA - GAL MGC n/a n/a
2 2DV9 - GAL GAL n/a n/a
3 1V6K - GAL GLC n/a n/a
4 1V6L - GAL BGC n/a n/a
5 2DVD - GAL GAL n/a n/a
6 2TEP - GAL NGA n/a n/a
7 2DVB - GAL C6 H12 O6 C([C@@H]1[....
8 1V6I - GAL GLC n/a n/a
9 2PEL Ki = 1.37 mM LAT C12 H22 O11 C([C@@H]1[....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2DVA - GAL MGC n/a n/a
2 2DV9 - GAL GAL n/a n/a
3 1V6K - GAL GLC n/a n/a
4 1V6L - GAL BGC n/a n/a
5 2DVD - GAL GAL n/a n/a
6 2TEP - GAL NGA n/a n/a
7 2DVB - GAL C6 H12 O6 C([C@@H]1[....
8 1V6I - GAL GLC n/a n/a
9 2PEL Ki = 1.37 mM LAT C12 H22 O11 C([C@@H]1[....
50% Homology Family (61)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 5T55 Kd = 0.68 nM NGA GLA GAL BGC n/a n/a
2 5T54 Kd = 0.87 nM A2G GLA FUC n/a n/a
3 5T5J Kd = 0.73 nM ACA SER SER VAL GLY A2G n/a n/a
4 5T52 Kd = 0.54 nM NGA C8 H15 N O6 CC(=O)N[C@....
5 5T5L Kd = 0.73 nM ACE SER SER VAL GLY A2G n/a n/a
6 5T5P Kd = 0.71 nM ACE SER THR VAL GLY A2G n/a n/a
7 1FNZ - A2G C8 H15 N O6 CC(=O)N[C@....
8 1S1A - MAN MMA n/a n/a
9 2ARB Ka = 26000 M^-1 NAG MAN n/a n/a
10 1N3Q - GLC BDF n/a n/a
11 2AR6 Ka = 63000 M^-1 NAG MAN MAN MAN NAG n/a n/a
12 1N3O - GYP C7 H14 O6 CO[C@@H]1[....
13 1N3P - GLC FRU n/a n/a
14 2ARX - MAN MAN n/a n/a
15 2ARE Ka = 1900 M^-1 MAN C6 H12 O6 C([C@@H]1[....
16 1LED - FUC GAL MAG FUC n/a n/a
17 1GSL - FUC GAL MAG FUC n/a n/a
18 1V00 - LAT C12 H22 O11 C([C@@H]1[....
19 3N3H - CIT C6 H8 O7 C(C(=O)O)C....
20 3N36 - GLA C6 H12 O6 C([C@@H]1[....
21 1AX0 Ka = 1340 M^-1 A2G C8 H15 N O6 CC(=O)N[C@....
22 1UZY - GAL BGC n/a n/a
23 1LTE - BGC GAL n/a n/a
24 1AX1 Ka = 1940 M^-1 BGC GAL n/a n/a
25 1AX2 Ka = 9730 M^-1 NDG GAL n/a n/a
26 1GZC Kd = 0.32 mM LAT C12 H22 O11 C([C@@H]1[....
27 3N35 - A2G C8 H15 N O6 CC(=O)N[C@....
28 1AXZ Ka = 1570 M^-1 GAL C6 H12 O6 C([C@@H]1[....
29 1GZ9 Kd = 0.31 mM FUC LAT n/a n/a
30 3ZYR Kd = 4.6 uM ASN NAG NAG BMA MAN MAN NAG NAG n/a n/a
31 3ZVX - MAN MAN MAN n/a n/a
32 5U38 - MDM C13 H24 O11 CO[C@@H]1[....
33 5KXE Kd = 5.45 uM 6Y2 C22 H31 N3 O13 CC(=O)N[C@....
34 5KXB - NGA C8 H15 N O6 CC(=O)N[C@....
35 5KXC - 6Y2 C22 H31 N3 O13 CC(=O)N[C@....
36 5KXD - 6Y2 C22 H31 N3 O13 CC(=O)N[C@....
37 4WV8 - LBT C12 H22 O11 C([C@@H]1[....
38 4U2A - A2G C8 H15 N O6 CC(=O)N[C@....
39 4U36 - TNR C11 H20 N2 O8 CC(=O)N[C@....
40 1JXN - MFU C7 H14 O5 C[C@H]1[C@....
41 3WCS - MAN NAG GAL n/a n/a
42 3WOG - MAN NAG n/a n/a
43 5EYX - MDM C13 H24 O11 CO[C@@H]1[....
44 5EYY - MDM C13 H24 O11 CO[C@@H]1[....
45 2BQP - GLC C6 H12 O6 C([C@@H]1[....
46 5T7P - XMM C14 H15 Br Cl N O6 c1cc(c(c2c....
47 2DVA - GAL MGC n/a n/a
48 2DV9 - GAL GAL n/a n/a
49 1V6K - GAL GLC n/a n/a
50 1V6L - GAL BGC n/a n/a
51 2DVD - GAL GAL n/a n/a
52 2TEP - GAL NGA n/a n/a
53 2DVB - GAL C6 H12 O6 C([C@@H]1[....
54 1V6I - GAL GLC n/a n/a
55 2PEL Ki = 1.37 mM LAT C12 H22 O11 C([C@@H]1[....
56 1G9F - GAL NAG GAL NAG GAL n/a n/a
57 2DTW - 2GS C7 H14 O6 CO[C@@H]1[....
58 1WBL - AMG C7 H14 O6 CO[C@@H]1[....
59 2ZMK - GLA EGA n/a n/a
60 2D3S - TNR C11 H20 N2 O8 CC(=O)N[C@....
61 2FMD - MAN MAN n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GAL MGC; Similar ligands found: 231
No: Ligand ECFP6 Tc MDL keys Tc
1 GAL MGC 1 1
2 A2G GAL 0.666667 0.957447
3 GAL A2G 0.666667 0.957447
4 GAL NGA 0.666667 0.957447
5 MAG FUC GAL 0.632353 0.979167
6 GAL SER A2G 0.623188 0.849057
7 NGA SER GAL 0.623188 0.849057
8 GAL TNR 0.623188 0.849057
9 A2G SER GAL 0.623188 0.849057
10 EAG RAM RAM GLC RAM NAG RAM RAM GLC RAM 0.617284 0.94
11 GAL A2G THR 0.605634 0.884615
12 GAL A2G MBN 0.597222 0.918367
13 NPO A2G GAL 0.594595 0.692308
14 GAL A2G NPO 0.594595 0.692308
15 BGC GAL NAG GAL 0.589041 0.957447
16 GAL NAG GAL GLC 0.589041 0.957447
17 2F8 0.578947 0.93617
18 MAG 0.578947 0.93617
19 GAL NDG 0.5625 0.957447
20 NLC 0.5625 0.957447
21 NDG GAL 0.5625 0.957447
22 8VZ 0.5625 0.92
23 M13 0.559322 0.744681
24 MDM 0.559322 0.744681
25 GAL MBG 0.559322 0.744681
26 GAL NGA GLA BGC GAL 0.558442 0.957447
27 CG3 A2G GAL 0.551282 0.681818
28 MAN BMA NAG 0.535211 0.957447
29 GLA GAL NAG 0.535211 0.957447
30 GLA MBG 0.534483 0.744681
31 NAG MBG 0.514706 1
32 NAG BMA 0.514706 0.862745
33 GAL LOG 0.514286 0.775862
34 DR5 0.508197 0.744681
35 MMA MAN 0.508197 0.744681
36 NAG A2G GAL 0.506494 0.938776
37 FUC NDG GAL 0.5 0.978723
38 BQZ 0.5 0.638298
39 GAL NDG FUC 0.5 0.978723
40 1GN ACY GAL ACY 1GN BGC GAL BGC 0.494118 0.938776
41 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.494118 0.938776
42 GAL NGA A2G 0.493151 0.938776
43 GAL NOK 0.486111 0.77193
44 MBG A2G 0.485714 1
45 A2G MBG 0.485714 1
46 SGA MAG FUC 0.481928 0.707692
47 GAL NAG GAL FUC 0.481481 0.978723
48 GLA NAG GAL FUC 0.481481 0.978723
49 NAG GAL GAL NAG GAL 0.481013 0.938776
50 GAL NAG GAL NAG GAL NAG 0.481013 0.92
51 NAG GAL GAL NAG 0.481013 0.938776
52 GAL NAG MAN 0.48 0.957447
53 LAT NAG GAL 0.475 0.957447
54 GLC GAL NAG GAL 0.475 0.957447
55 GAL NAG GAL 0.474359 0.918367
56 TRE 0.471698 0.702128
57 NAG NGA 0.471429 0.938776
58 NAG A2G 0.471429 0.938776
59 NAG BDP NAG BDP NAG BDP NAG 0.470588 0.901961
60 GAL FUC 0.46875 0.702128
61 FUC NAG GAL 0.467532 0.901961
62 DR3 0.467532 0.978723
63 THR NGA GAL NAG 0.465909 0.884615
64 MMA 0.462963 0.680851
65 GYP 0.462963 0.680851
66 AMG 0.462963 0.680851
67 MBG 0.462963 0.680851
68 NAG NM9 0.461538 0.921569
69 GAL GC2 0.461538 0.666667
70 GAL NAG GAL BGC 0.457831 0.918367
71 GLA GAL NAG FUC GAL GLC 0.456522 0.978723
72 GAL BGC NAG GAL 0.455696 0.957447
73 NAG MAN MMA 0.454545 1
74 G4S MAG FUC 0.452381 0.707692
75 NAG BDP 0.452055 0.88
76 M3M 0.451613 0.702128
77 LB2 0.451613 0.702128
78 MAN GLC 0.451613 0.702128
79 NGR 0.451613 0.702128
80 MAN MMA MAN 0.450704 0.744681
81 NAG NDG BMA 0.45 0.867925
82 NAG NAG BMA 0.45 0.867925
83 FUC GAL NAG GAL BGC 0.449438 0.978723
84 GLC NAG GAL GAL FUC 0.449438 0.978723
85 GAL GLC NAG GAL FUC 0.449438 0.978723
86 NAG GAL BGC 0.443038 0.957447
87 FUC NAG GLA GAL 0.44186 0.958333
88 CGC 0.441176 0.702128
89 LEC NGA 0.440476 0.707692
90 GLC BGC BGC BGC BGC BGC BGC 0.439394 0.702128
91 GLA EGA 0.439394 0.708333
92 BGC BGC BGC GLC BGC BGC 0.439394 0.702128
93 NAG NAG BMA MAN 0.436782 0.867925
94 GLA GLA FUC 0.43662 0.723404
95 GAL GAL FUC 0.43662 0.723404
96 GLA GAL FUC 0.43662 0.723404
97 NAG GAL 0.43662 0.957447
98 FUC GAL GLA 0.43662 0.723404
99 FUC GLA GLA 0.43662 0.723404
100 GAL NAG 0.43662 0.957447
101 2M4 0.435484 0.702128
102 LAT GLA 0.435484 0.702128
103 GLA MMA ABE 0.434211 0.734694
104 NGA GLA GAL BGC 0.433735 0.957447
105 BGC BGC 0.430769 0.653061
106 BMA BMA 0.430769 0.653061
107 FUC BGC GAL 0.430556 0.723404
108 NGA GAL FUC 0.43038 0.978723
109 A2G GAL FUC 0.43038 0.978723
110 FUC GAL A2G 0.43038 0.978723
111 A2G GLA FUC 0.43038 0.978723
112 FUC GLA A2G 0.43038 0.978723
113 GLA GLA 0.428571 0.702128
114 GLC GAL 0.428571 0.702128
115 BGC BMA 0.428571 0.702128
116 MAL 0.428571 0.702128
117 GLA GAL 0.428571 0.702128
118 B2G 0.428571 0.702128
119 CBI 0.428571 0.702128
120 BGC GAL 0.428571 0.702128
121 LAT 0.428571 0.702128
122 BMA GAL 0.428571 0.702128
123 MAB 0.428571 0.702128
124 N9S 0.428571 0.702128
125 FUC BGC GAL NAG GAL 0.428571 0.978723
126 LBT 0.428571 0.702128
127 CBK 0.428571 0.702128
128 GAL BGC 0.428571 0.702128
129 NGA GAL BGC 0.428571 0.957447
130 MAN MNM 0.426471 0.807692
131 NAG GAL NAG 0.425 0.938776
132 NG1 0.424242 0.724138
133 GN1 0.424242 0.724138
134 GAL SIA NGA GAL 0.421569 0.867925
135 GAL NGA GAL SIA 0.421569 0.851852
136 SIA GAL NGA GAL 0.421569 0.867925
137 NGA GAL 0.418919 0.897959
138 BMA FRU 0.41791 0.615385
139 FRU GAL 0.41791 0.615385
140 G6S NAG 0.417722 0.703125
141 NAG GAL FUC 0.417722 0.978723
142 NDG GAL FUC 0.417722 0.978723
143 FUC GAL NAG 0.417722 0.978723
144 FUC GAL NDG 0.417722 0.978723
145 GAL NAG FUC 0.417722 0.978723
146 DR2 0.417722 0.978723
147 FUL GAL NAG 0.417722 0.978723
148 NAG FUC 0.416667 0.93617
149 8VW 0.41573 0.886792
150 RZM 0.415385 0.698113
151 GLA GAL GAL 0.414286 0.702128
152 FUC NAG 0.413333 0.882353
153 IFM BMA 0.411765 0.685185
154 BMA IFM 0.411765 0.685185
155 IFM BGC 0.411765 0.685185
156 NAG BMA MAN MAN MAN MAN 0.411111 0.957447
157 NAG GDL 0.410959 0.938776
158 NDG NAG 0.410959 0.938776
159 CBS 0.410959 0.938776
160 CBS CBS 0.410959 0.938776
161 WZ3 0.410256 0.729167
162 GC4 NAG 0.410256 0.88
163 FUC BGC GAL NAG 0.409091 0.978723
164 NAG AMU NAG AMV 0.409091 0.921569
165 DOM 0.409091 0.673469
166 GLA GAL BGC 5VQ 0.408451 0.68
167 4RS 0.408451 0.673077
168 GLC DMJ 0.405797 0.703704
169 491 0.405405 0.706897
170 A2G GAL NAG FUC GAL GLC 0.40404 0.92
171 GLC GAL NAG GAL FUC A2G 0.40404 0.92
172 BMA BMA BMA BMA BMA 0.402985 0.702128
173 MAN MAN BMA BMA BMA BMA 0.402985 0.702128
174 MT7 0.402985 0.702128
175 BMA BMA BMA 0.402985 0.702128
176 MTT 0.402985 0.702128
177 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.402985 0.702128
178 CTR 0.402985 0.702128
179 GLA GAL BGC 0.402985 0.702128
180 BGC BGC BGC BGC BGC 0.402985 0.702128
181 BMA MAN BMA 0.402985 0.702128
182 BGC GLC GLC 0.402985 0.702128
183 CE6 0.402985 0.702128
184 GLC BGC BGC BGC 0.402985 0.702128
185 GLC BGC BGC 0.402985 0.702128
186 B4G 0.402985 0.702128
187 CEY 0.402985 0.702128
188 CE5 0.402985 0.702128
189 GLA GAL GLC 0.402985 0.702128
190 CT3 0.402985 0.702128
191 BGC GLC GLC GLC 0.402985 0.702128
192 BGC BGC BGC BGC BGC BGC 0.402985 0.702128
193 GLC GLC BGC 0.402985 0.702128
194 CTT 0.402985 0.702128
195 BGC BGC BGC GLC 0.402985 0.702128
196 U63 0.402985 0.647059
197 GLC BGC BGC BGC BGC BGC 0.402985 0.702128
198 BGC BGC BGC 0.402985 0.702128
199 GLC GAL GAL 0.402985 0.702128
200 CEX 0.402985 0.702128
201 GLC GLC GLC GLC GLC 0.402985 0.702128
202 BMA BMA BMA BMA BMA BMA 0.402985 0.702128
203 MAN BMA BMA BMA BMA BMA 0.402985 0.702128
204 GLC BGC BGC BGC BGC 0.402985 0.702128
205 BGC BGC BGC BGC 0.402985 0.702128
206 DXI 0.402985 0.702128
207 BGC GLC GLC GLC GLC GLC GLC 0.402985 0.702128
208 BGC BGC GLC 0.402985 0.702128
209 GLC BGC GLC 0.402985 0.702128
210 MAN BMA BMA BMA BMA 0.402985 0.702128
211 GAL GAL GAL 0.402985 0.702128
212 CE8 0.402985 0.702128
213 BGC GLC GLC GLC GLC 0.402985 0.702128
214 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.402985 0.702128
215 MLR 0.402985 0.702128
216 MAN BMA BMA 0.402985 0.702128
217 GAL NAG FUC FUC 0.402439 0.958333
218 FUC GAL NAG FUC 0.402439 0.958333
219 FUC GAL NDG FUC 0.402439 0.958333
220 FUC NAG GAL FUC 0.402439 0.958333
221 FUC NDG GAL FUC 0.402439 0.958333
222 BDZ 0.402439 0.958333
223 GAL NDG FUC FUC 0.402439 0.958333
224 BCW 0.402439 0.958333
225 WZ5 0.402174 1
226 NAG MAN 0.4 0.918367
227 ABL 0.4 0.843137
228 NBG 0.4 0.851064
229 BGC GAL NAG GAL FUC FUC 0.4 0.958333
230 A2G GAL BGC FUC 0.4 0.978723
231 GLC GAL NAG GAL FUC FUC 0.4 0.958333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2PEL; Ligand: LAT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2pel.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2PEL; Ligand: LBT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2pel.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2PEL; Ligand: LBT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2pel.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2PEL; Ligand: LBT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2pel.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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