Receptor
PDB id Resolution Class Description Source Keywords
2DJH 1.9 Å EC: 3.1.-.- CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 ESCHERICHIA COLI ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL BASIS FOR SEQUENCE-DEPENDENT RECOGNITION OF COLICIN E5 TRNASE BY MIMICKING THE MRNA-TRNA INTERACTION NUCLEIC ACIDS RES. V. 34 6074 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
3PD UM3 A:117;
Valid;
none;
submit data
634.368 n/a P(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DJH 1.9 Å EC: 3.1.-.- CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 ESCHERICHIA COLI ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL BASIS FOR SEQUENCE-DEPENDENT RECOGNITION OF COLICIN E5 TRNASE BY MIMICKING THE MRNA-TRNA INTERACTION NUCLEIC ACIDS RES. V. 34 6074 2006
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 2DJH - 3PD UM3 n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 2DJH - 3PD UM3 n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 2DJH - 3PD UM3 n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 3PD UM3; Similar ligands found: 33
No: Ligand ECFP6 Tc MDL keys Tc
1 3PD UM3 1 1
2 DU DU DU DU BRU DG DU 0.798319 0.940476
3 DA DU DG DA 0.758929 0.939024
4 DG DG 0.685185 0.926829
5 DC DG 0.612903 0.975309
6 DG DA DC DG 0.609929 0.963415
7 DG DC 0.571429 0.939024
8 DC DG DA DC 0.541667 0.939024
9 DU DU DU DU BRU DA DU 0.527397 0.83908
10 DA DC DG DA 0.526316 0.927711
11 DC DG DT DA 0.509434 0.917647
12 CGP 0.507576 0.951219
13 DT DA DC DG 0.503145 0.917647
14 G U 0.5 0.938272
15 DU DU DU DU BRU DU DU 0.496063 0.755814
16 DGI 0.474138 0.86747
17 DGP 0.473214 0.878049
18 DG 0.473214 0.878049
19 DA DT DA DA 0.465278 0.858824
20 UM3 0.447619 0.8
21 DGT 0.446281 0.86747
22 U2G 0.437956 0.903614
23 A G U 0.437909 0.926829
24 DT MA7 DT 0.433333 0.860465
25 G U34 0.42446 0.926829
26 A G U U 0.424051 0.926829
27 G C 0.41844 0.938272
28 139 0.414286 0.869048
29 DC DC DT DG 0.412214 0.817073
30 PUA 0.410959 0.879518
31 G G G RPC 0.408451 0.9375
32 ALF 5GP 0.403226 0.816092
33 UCG 0.4 0.902439
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DJH; Ligand: 3PD UM3; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2djh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback