Receptor
PDB id Resolution Class Description Source Keywords
2DBZ 2.45 Å EC: 1.1.1.26 CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYRO HORIKOSHII OT3, COMPLEXED WITH NADP (P61) PYROCOCCUS HORIKOSHII GLYOXYLATE REDUCTASE D-3-PHOSPHOGLYCERATE DEHYDROGENASE STGENOMICS NPPSFA NATIONAL PROJECT ON PROTEIN STRUCTURAL ANFUNCTIONAL ANALYSES RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE RSGI OXIDOREDUCTASE
Ref.: STRUCTURE OF ARCHAEAL GLYOXYLATE REDUCTASE FROM PYR HORIKOSHII OT3 COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE. ACTA CRYSTALLOGR.,SECT.D V. 63 357 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAP A:401;
B:402;
Valid;
Valid;
none;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
SO4 A:502;
A:504;
B:501;
B:503;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DBZ 2.45 Å EC: 1.1.1.26 CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYRO HORIKOSHII OT3, COMPLEXED WITH NADP (P61) PYROCOCCUS HORIKOSHII GLYOXYLATE REDUCTASE D-3-PHOSPHOGLYCERATE DEHYDROGENASE STGENOMICS NPPSFA NATIONAL PROJECT ON PROTEIN STRUCTURAL ANFUNCTIONAL ANALYSES RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE RSGI OXIDOREDUCTASE
Ref.: STRUCTURE OF ARCHAEAL GLYOXYLATE REDUCTASE FROM PYR HORIKOSHII OT3 COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE. ACTA CRYSTALLOGR.,SECT.D V. 63 357 2007
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2DBQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2DBQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5AOV - GLV C2 H2 O3 C(=O)C(=O)....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 177 families.
1 4E5M - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 4E5N - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 4E5K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 4NU5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 4E5P - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 4EBF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 3BAZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
8 2GCG - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
9 2DBQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
10 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
11 5AOV - GLV C2 H2 O3 C(=O)C(=O)....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 127
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NAD IBO 0.688 0.921053
10 NHD 0.68254 0.958904
11 NJP 0.661417 0.972973
12 NAJ PYZ 0.659091 0.898734
13 NFD 0.658915 0.934211
14 DND 0.619048 0.959459
15 NXX 0.619048 0.959459
16 ZID 0.605839 0.972603
17 NAQ 0.59854 0.922078
18 ATR 0.59292 0.917808
19 NAE 0.591241 0.946667
20 NDE 0.58042 0.986301
21 A22 0.571429 0.958904
22 AMP NAD 0.571429 0.933333
23 NAJ 0.567164 0.986111
24 A2R 0.563025 0.932432
25 NDC 0.561644 0.922078
26 NA7 0.552846 0.907895
27 ODP 0.551471 0.935065
28 A2P 0.539823 0.930556
29 8ID 0.537313 0.910256
30 NAD BBN 0.525974 0.865854
31 NPW 0.525547 0.8875
32 CNA 0.521739 0.959459
33 NZQ 0.521739 0.910256
34 NAD CJ3 0.519231 0.835294
35 NDP 0.514493 0.922078
36 PO4 PO4 A A A A PO4 0.503937 0.930556
37 DG1 0.503401 0.922078
38 1DG 0.503401 0.922078
39 NAD TDB 0.5 0.696078
40 TXP 0.5 0.922078
41 NMN AMP PO4 0.492958 0.921053
42 XNP 0.492958 0.875
43 25L 0.492308 0.958904
44 25A 0.492063 0.972222
45 NAD NDT 0.490909 0.747368
46 NMN 0.486726 0.888889
47 NGD 0.485714 0.935065
48 2AM 0.477876 0.891892
49 ADP 0.458333 0.945205
50 PAP 0.451613 0.931507
51 ADP MG 0.45082 0.906667
52 BEF ADP 0.447154 0.883117
53 ADP BEF 0.447154 0.883117
54 A2D 0.445378 0.945205
55 AN2 0.442623 0.932432
56 ADP PO3 0.44 0.944444
57 SAP 0.44 0.896104
58 AGS 0.44 0.896104
59 M33 0.439024 0.906667
60 AR6 AR6 0.438849 0.945205
61 BA3 0.438017 0.945205
62 ATP MG 0.436508 0.906667
63 ADP BMA 0.43609 0.92
64 OAD 0.43609 0.92
65 ATP 0.435484 0.945205
66 OOB 0.435115 0.958904
67 B4P 0.434426 0.945205
68 AP5 0.434426 0.945205
69 GAP 0.433071 0.92
70 0WD 0.432432 0.922078
71 5FA 0.432 0.945205
72 2A5 0.432 0.87013
73 AQP 0.432 0.945205
74 00A 0.428571 0.909091
75 CA0 0.427419 0.92
76 ALF ADP 0.426357 0.871795
77 ADP ALF 0.426357 0.871795
78 ACP 0.424 0.92
79 NAJ PZO 0.423841 0.897436
80 9SN 0.423358 0.897436
81 VO4 ADP 0.423077 0.932432
82 ANP MG 0.423077 0.896104
83 ADP VO4 0.423077 0.932432
84 WAQ 0.422222 0.884615
85 ACQ 0.421875 0.92
86 V3L 0.421875 0.945205
87 ADQ 0.421053 0.92
88 AR6 0.420635 0.918919
89 APR 0.420635 0.918919
90 ATP A A A 0.42029 0.958333
91 CO7 0.419753 0.786517
92 1ZZ 0.419118 0.841463
93 3OD 0.419118 0.92
94 DLL 0.41791 0.958904
95 AD9 0.417323 0.92
96 NAX 0.416667 0.875
97 OVE 0.416667 0.857143
98 MYR AMP 0.416058 0.841463
99 AV2 0.415385 0.868421
100 A3P 0.414634 0.944444
101 NNR 0.414414 0.72973
102 ALF ADP 3PG 0.413793 0.8625
103 OMR 0.413793 0.831325
104 LA8 ALF 3PG 0.413793 0.8625
105 ANP 0.410853 0.92
106 A1R 0.410448 0.860759
107 ABM 0.409836 0.893333
108 AMP 0.408333 0.944444
109 A 0.408333 0.944444
110 SON 0.408 0.933333
111 PPS 0.407692 0.829268
112 5AL 0.407692 0.932432
113 TYR AMP 0.407143 0.933333
114 NAI 0.406897 0.909091
115 7D3 0.406504 0.857143
116 DAL AMP 0.406015 0.932432
117 ADX 0.404762 0.829268
118 ATF 0.40458 0.907895
119 3UK 0.404412 0.945946
120 AMP DBH 0.404255 0.894737
121 139 0.402685 0.875
122 AMP MG 0.401639 0.893333
123 50T 0.401575 0.906667
124 SRP 0.401515 0.907895
125 A A 0.40146 0.972222
126 FA5 0.4 0.933333
127 3AM 0.4 0.90411
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DBZ; Ligand: NAP; Similar sites found: 534
This union binding pocket(no: 1) in the query (biounit: 2dbz.bio1) has 30 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2BOS GLA GAL GLC NBU 0.01389 0.42364 None
2 2BOS GLA GAL GLC 0.01385 0.42311 None
3 1ORR NAD 0.0002757 0.42378 1.1976
4 4RSL FAD 0.001534 0.42361 1.1976
5 2DM6 IMN 0.00004877 0.42497 1.2012
6 2DM6 NAP 0.0000838 0.42242 1.2012
7 1FWV SGA MAG FUC 0.004789 0.45901 1.49254
8 4MP8 NAD 0.000001481 0.47825 1.49701
9 1VKO NAD 0.0000196 0.46895 1.49701
10 1GY8 NAD 0.0003404 0.42941 1.49701
11 4A0S NAP 0.0007793 0.41821 1.49701
12 1PN0 FAD 0.005688 0.41179 1.49701
13 1PN0 IPH 0.005961 0.41179 1.49701
14 2FN1 SAL 0.03203 0.40395 1.49701
15 3DAG FEG 0.001498 0.40232 1.49701
16 2PZM UDP 0.0006923 0.44513 1.51515
17 2PZM NAD 0.0006923 0.44513 1.51515
18 3H8V ATP 0.00001574 0.53359 1.71233
19 3WQQ IB3 0.0002361 0.46169 1.79641
20 4KP7 NAP 0.0004445 0.45697 1.79641
21 4KP7 1UQ 0.0004515 0.45261 1.79641
22 1YB5 NAP 0.0002511 0.42303 1.79641
23 3TTN SPD 0.0196 0.4208 1.79641
24 3SQP FAD 0.03597 0.41658 1.79641
25 1A99 PUT 0.02762 0.41388 1.79641
26 4NBT NAD 0.002081 0.40935 1.79641
27 2J8Z NAP 0.002875 0.404 1.79641
28 4J36 FAD 0.001146 0.40064 1.79641
29 4CJX NAP 0.000684 0.43726 1.88088
30 1I36 NAP 0.00002755 0.50223 1.89394
31 4ZRN NAD 0.0003847 0.4142 1.92308
32 2Q0L NAP 0.001866 0.44851 1.92926
33 4OOE NDP 0.0001186 0.46397 2.09581
34 3ULK NDP 0.0004851 0.45421 2.09581
35 4PIV NDP 0.0006191 0.43239 2.09581
36 1Z45 NAD 0.0004001 0.43143 2.09581
37 1P31 EPU 0.004158 0.42465 2.09581
38 2R4J 13P 0.006357 0.41304 2.09581
39 4R1S NAP 0.002739 0.41022 2.09581
40 5FJN FAD 0.006223 0.40575 2.09581
41 5FJN BE2 0.007261 0.40575 2.09581
42 5EZ7 FAD 0.006908 0.40102 2.09581
43 3WXB NDP 0.0009183 0.41403 2.15054
44 3VGL BGC 0.007484 0.43672 2.18069
45 3QWI NAP 0.001667 0.40111 2.22222
46 3VPH NAD 0.00001198 0.47039 2.25806
47 3VPH OXM 0.00002046 0.45497 2.25806
48 2WSB NAD 0.003097 0.41593 2.3622
49 5DOZ NDP 0.001036 0.4052 2.36686
50 4YCA NDP 0.0001318 0.46216 2.38095
51 1LDN NAD 0.000008966 0.50309 2.39521
52 1E5Q NDP 0.000008293 0.50071 2.39521
53 3B20 NAD 0.00002701 0.49799 2.39521
54 3B1J NAD 0.000008388 0.49332 2.39521
55 2D2I NAP 0.00004145 0.49039 2.39521
56 3Q3C NAD 0.00004632 0.48842 2.39521
57 1X87 NAD 0.0001395 0.47293 2.39521
58 3OA2 NAD 0.000113 0.45753 2.39521
59 1BXK NAD 0.0002303 0.44576 2.39521
60 1ZMD NAI 0.0005673 0.44052 2.39521
61 4U7W NDP 0.0003483 0.4356 2.39521
62 1FEC FAD 0.001896 0.43036 2.39521
63 1PZG A3D 0.000007758 0.45807 2.41692
64 1NVT NAP 0.00008892 0.47685 2.43902
65 2QZZ NAP 0.0001245 0.41854 2.51572
66 2QZZ EMF 0.0001343 0.41364 2.51572
67 1KYQ NAD 0.0000009057 0.59648 2.55474
68 1WOQ BGC 0.005116 0.44053 2.62172
69 2GDZ NAD 0.003608 0.40161 2.62172
70 5JE8 NAD 0.000001107 0.5492 2.69461
71 1CDO NAD 0.00001156 0.50381 2.69461
72 1B8U NAD 0.00006271 0.49657 2.69461
73 4MDH NAD 0.0001143 0.46091 2.69461
74 5U8U FAD 0.001858 0.44344 2.69461
75 1N9G NAP 0.000891 0.43266 2.69461
76 1BZL FAD 0.007883 0.43011 2.69461
77 2EWM NAD 0.0004763 0.42377 2.69461
78 1B8U OAA 0.0004014 0.42236 2.69461
79 5MBX FAD 0.005397 0.41752 2.69461
80 5MBX SP5 0.005397 0.41752 2.69461
81 4WAS NAP 0.003461 0.40971 2.69461
82 1RM0 NAI 0.00002542 0.40917 2.69461
83 4WAS COO 0.005418 0.40205 2.69461
84 2YVJ NAI 0.0003985 0.47049 2.69608
85 2YVF NAD 0.002019 0.4398 2.69608
86 2YVF FAD 0.00194 0.4398 2.69608
87 5MDH NAD 0.0001559 0.45569 2.7027
88 2CVQ NDP 0.0000561 0.46911 2.75229
89 2QRK AMP 0.00007563 0.42302 2.79188
90 1G0N NDP 0.001035 0.43268 2.82686
91 1G0N PHH 0.001386 0.43093 2.82686
92 4IF4 BEF 0.01244 0.42138 2.88462
93 3NGL NAP 0.009215 0.40285 2.89855
94 1UXG NAD 0.00001237 0.44583 2.91262
95 3VYW SAM 0.004425 0.41666 2.92208
96 1RM4 NDP 0.00002012 0.48105 2.96736
97 2BH9 NAP 0.00002594 0.53562 2.99401
98 1EBF NAD 0.000002391 0.50046 2.99401
99 1O6Z NAD 0.00003906 0.49145 2.99401
100 5GZ6 NDP 0.0001065 0.48664 2.99401
101 3JV7 NAD 0.00002237 0.47832 2.99401
102 1YS4 NAP 0.0001535 0.4754 2.99401
103 1X14 NAD 0.0004762 0.47156 2.99401
104 5GZ6 7C3 0.0001776 0.46857 2.99401
105 1NVM NAD 0.00004148 0.46269 2.99401
106 2IXB NAD 0.00005221 0.45773 2.99401
107 3L4S NAD 0.00007527 0.44642 2.99401
108 3L4S 3PG 0.00008246 0.43967 2.99401
109 3A06 NDP 0.0001229 0.43213 2.99401
110 2BD0 NAP 0.0002384 0.4303 2.99401
111 5T2U NAP 0.001058 0.42615 2.99401
112 4J1Q NDP 0.0006967 0.42392 2.99401
113 5EOW FAD 0.001493 0.42162 2.99401
114 3A06 FOM 0.0001448 0.42147 2.99401
115 1RKX NAD 0.0006731 0.41928 2.99401
116 1K3T BRZ 0.0003469 0.41863 2.99401
117 3WMX NAD 0.002222 0.4138 2.99401
118 2IXB A2G 0.00009899 0.41356 2.99401
119 3DTU DXC 0.02121 0.41331 2.99401
120 1VJT NAD 0.009492 0.40532 2.99401
121 4X9M FAD 0.006252 0.40374 2.99401
122 1E1M FAD 0.01233 0.40187 2.99401
123 1KOL NAD 0.00001851 0.45052 3.01508
124 3AFN NAP 0.001512 0.42014 3.10078
125 5JCM ISD 0.003941 0.4296 3.10421
126 5JCM NAD 0.003941 0.4296 3.10421
127 5JCM FAD 0.003801 0.4296 3.10421
128 1T26 NAI 0.00001479 0.43016 3.10559
129 2A92 NAI 0.00002195 0.46709 3.11526
130 1ZQ9 SAM 0.00209 0.43811 3.15789
131 2JAP NDP 0.001133 0.4105 3.23887
132 2JAH NDP 0.001957 0.40168 3.23887
133 5O4J PJL 0.003997 0.40374 3.28467
134 5O4J SAH 0.004506 0.40291 3.28467
135 5O4J 9KH 0.004506 0.40291 3.28467
136 2NU8 COA 0.00001108 0.50454 3.29341
137 2I3G NAP 0.00000621 0.49324 3.29341
138 3CIF NAD 0.00001405 0.492 3.29341
139 1O0S NAI 0.0000805 0.48286 3.29341
140 3CIF G3H 0.00009346 0.46995 3.29341
141 1DJN ADP 0.000319 0.45799 3.29341
142 2Q1S NAI 0.0003501 0.45706 3.29341
143 3WLE NAD 0.00001409 0.45386 3.29341
144 2B5W NAP 0.00006376 0.4372 3.29341
145 1RYD NDP 0.0000424 0.43144 3.29341
146 4QS9 BGC 0.009607 0.43112 3.29341
147 5BUK FAD 0.003333 0.41857 3.29341
148 1Q9I TEO 0.01169 0.40496 3.29341
149 5T9E NAP 0.000007866 0.49201 3.32103
150 1EJ0 SAM 0.007086 0.41422 3.33333
151 1V59 NAD 0.002043 0.45567 3.34728
152 1E3I CXF 0.000005162 0.46821 3.45745
153 2HMT NAI 0.0002536 0.46616 3.47222
154 2YY7 NAD 0.000674 0.41894 3.52564
155 1GUZ NAD 0.00001411 0.49193 3.54839
156 1GV0 NAD 0.0000198 0.48056 3.54839
157 2DT5 NAD 0.0000008092 0.53919 3.59281
158 3GFB NAD 0.000004617 0.51488 3.59281
159 1WPQ NAD 0.00004879 0.49191 3.59281
160 4HXY NDP 0.00008457 0.45119 3.59281
161 4B7X NAP 0.00005598 0.44788 3.59281
162 4JJF FE9 0.002633 0.40813 3.59281
163 2B9W FAD 0.01036 0.40646 3.59281
164 4TXI FAD 0.001531 0.40102 3.59281
165 1YJQ NAP 0.0000189 0.46274 3.63036
166 1UAY ADN 0.01537 0.40888 3.71901
167 2RI1 GLP 0.0161 0.42708 3.82979
168 1E3W NAD 0.002079 0.40513 3.83142
169 5X20 NAD 0.00001907 0.47296 3.84615
170 4E13 NAD 0.000009747 0.5315 3.88693
171 3OJO NAD 0.00001191 0.51739 3.89222
172 4DPL NAP 0.00002688 0.47575 3.89222
173 2B4R NAD 0.00003155 0.46596 3.89222
174 4PLG NAI 0.00000644 0.45988 3.89222
175 2B4R AES 0.0001102 0.45198 3.89222
176 1PJS NAD 0.00002659 0.43049 3.89222
177 4PLG OXM 0.005827 0.42999 3.89222
178 2ZAT NAP 0.001587 0.4098 3.89222
179 1NJJ GET 0.02266 0.40787 3.89222
180 4D42 NAP 0.00925 0.40475 3.90071
181 4D42 W0I 0.00925 0.40475 3.90071
182 1R37 NAD 0.00006226 0.47539 4.03458
183 5THQ NDP 0.0006905 0.4291 4.04412
184 3B6O TMP 0.0436 0.40072 4.04858
185 3NUG NAD 0.004286 0.40005 4.04858
186 1O8B ABF 0.01601 0.41963 4.10959
187 3V1U NAD 0.002498 0.41469 4.11255
188 4K28 NAD 0.000002931 0.53224 4.19162
189 2FR1 NDP 0.00006306 0.45117 4.19162
190 3UCL NAP 0.002973 0.43675 4.19162
191 3UCL CYH 0.002672 0.43675 4.19162
192 3UCL FAD 0.002672 0.43675 4.19162
193 3GD4 NAD 0.001102 0.43559 4.19162
194 2ZB3 NDP 0.0005031 0.43284 4.19162
195 4PPF FLC 0.00838 0.42804 4.19162
196 3ZNN FAD 0.003539 0.42665 4.19162
197 3MJE NDP 0.0009529 0.41746 4.19162
198 1EQ2 NAP 0.001458 0.41062 4.19162
199 2X6T NAP 0.001542 0.40974 4.19162
200 5AYV KPL 0.00004131 0.48382 4.20712
201 5AYV NAP 0.000009616 0.47352 4.20712
202 1J0X NAD 0.0002282 0.46455 4.21687
203 4IN9 SER TRP PHE PRO 0.03871 0.40535 4.21687
204 2VYN NAD 0.0001106 0.45788 4.22961
205 1GAD NAD 0.00001349 0.48257 4.24242
206 1SOW NAD 0.000004965 0.49022 4.26829
207 3V1Y NAD 0.0000101 0.50613 4.45104
208 4GKV NAD 0.000001987 0.49175 4.46429
209 1MV8 NAD 0.00000687 0.51272 4.49102
210 1MUU NAD 0.00002435 0.49537 4.49102
211 3L9W AMP 0.0001469 0.44158 4.49102
212 3L9W GSH 0.0003871 0.43717 4.49102
213 1SZ2 BGC 0.01201 0.43067 4.49102
214 2FZW NAD 0.000009264 0.43031 4.49102
215 4R5M NAP 0.0008378 0.4244 4.49102
216 4R5M 4NO 0.0007973 0.41747 4.49102
217 3S5W NAP 0.008861 0.4167 4.49102
218 5UAO FAD 0.002717 0.41608 4.49102
219 2ZB4 NAP 0.0003292 0.4071 4.49102
220 1N1G BCP 0.0005581 0.40678 4.49102
221 2ZB4 5OP 0.0003539 0.40267 4.49102
222 5UAV NDP 0.000008039 0.51319 4.65839
223 5UAV TFB 0.000008039 0.51319 4.65839
224 3SJU NDP 0.001521 0.40621 4.6595
225 2Q46 NAP 0.0001962 0.44841 4.74308
226 3KU0 ADE 0.02537 0.41806 4.78088
227 5CAE COA 0.000004711 0.52896 4.79042
228 4RDH AMP 0.0001327 0.50236 4.79042
229 1H2B NAJ 0.000001741 0.49905 4.79042
230 4BVA NDP 0.00001461 0.49493 4.79042
231 4BVA T3 0.0000792 0.47687 4.79042
232 5CAE SIN 0.00001866 0.46265 4.79042
233 3ORF NAD 0.0001348 0.45462 4.79042
234 1LJ8 NAD 0.001095 0.43922 4.79042
235 1E7S NAP 0.0004548 0.43898 4.79042
236 2NVK NAP 0.01054 0.43368 4.79042
237 1M2W NAD 0.001862 0.42611 4.79042
238 4D79 ATP 0.00004431 0.42435 4.79042
239 4EIP FAD 0.003247 0.42085 4.79042
240 4EIP K2C 0.003247 0.42085 4.79042
241 2DKN NAI 0.001089 0.42006 4.79042
242 4GLL NAD 0.001154 0.40667 4.79042
243 2F5X ASP 0.0253 0.41342 4.80769
244 1V6A TRE 0.0003313 0.51579 4.81928
245 1O5I NAD 0.002297 0.43254 4.81928
246 3RFV NAI 0.001451 0.41817 4.86891
247 3RFV 15L 0.002224 0.41379 4.86891
248 4OSP NAP 0.003151 0.40248 4.94297
249 1ZH8 NAP 0.00002343 0.47873 5.08982
250 2Y6Q FAD 0.0004858 0.41882 5.08982
251 1PS9 FAD 0.005434 0.40716 5.08982
252 1PS9 NAP 0.002224 0.40093 5.08982
253 1P0F NAP 0.000003502 0.49548 5.09383
254 1DSS NAD 0.00004056 0.48648 5.1051
255 1HYE NAP 0.00004304 0.49418 5.11182
256 4NBU NAI 0.001996 0.402 5.2
257 4XB2 HSE 0.000003953 0.51857 5.37313
258 4XB2 NDP 0.0000005401 0.51784 5.37313
259 1LLU NAD 0.000002212 0.4901 5.38922
260 3ITJ CIT 0.005579 0.45314 5.38922
261 5MQ6 NDP 0.0005164 0.44929 5.38922
262 2YYY NAP 0.0002149 0.4469 5.38922
263 1Y8Q ATP 0.0005128 0.44578 5.38922
264 3EF0 ALF 0.008773 0.43517 5.38922
265 2VZ0 D64 0.004536 0.43307 5.38922
266 2VZ0 NAP 0.004536 0.43307 5.38922
267 5K6A NAP 0.0008513 0.42563 5.38922
268 5JDC NAP 0.0007892 0.42539 5.38922
269 2WD7 NAP 0.0008912 0.42338 5.38922
270 3LXD FAD 0.003087 0.4105 5.38922
271 3JQ7 NAP 0.003241 0.40463 5.38922
272 2BGM NAJ 0.000623 0.42185 5.39568
273 4FC7 COA 0.003195 0.4174 5.41516
274 1X7D NAD 0.000009878 0.49782 5.42857
275 1X7D ORN 0.000009315 0.45449 5.42857
276 5ITV NAI 0.0007523 0.42913 5.4902
277 1OMO NAD 0.000001929 0.54479 5.59006
278 4XZ3 COA 0.0009092 0.43906 5.65217
279 4XYM COA 0.002818 0.41859 5.65217
280 1J5P NAD 0.000000114 0.57713 5.68862
281 3ICT ADP 0.0000172 0.55747 5.68862
282 3ICS ADP 0.00001785 0.55668 5.68862
283 2CDU ADP 0.00006967 0.50989 5.68862
284 1F8F NAD 0.00002644 0.49393 5.68862
285 1GQ2 NAP 0.00001512 0.49078 5.68862
286 1F8G NAD 0.001072 0.43962 5.68862
287 5L4S NAP 0.001616 0.42388 5.68862
288 5L4S 6KX 0.001616 0.42388 5.68862
289 5JCA FAD 0.002813 0.41962 5.68862
290 5JCA NDP 0.006173 0.41935 5.68862
291 2V6G NAP 0.0009238 0.41412 5.68862
292 4DCM SAM 0.01896 0.4011 5.68862
293 1UJ5 5RP 0.02563 0.40153 5.72687
294 1DRV A3D 0.00005603 0.49395 5.86081
295 1LTH NAD 0.00000539 0.52657 5.95611
296 5T9F TYR 0.000003839 0.52737 5.98802
297 5T9F NAP 0.000004521 0.52301 5.98802
298 2OOR NAD 0.001119 0.43882 5.98802
299 1L7E NAI 0.002098 0.42078 5.98802
300 1QMG APX 0.002527 0.42058 5.98802
301 3ICC NAP 0.0005184 0.41906 5.98802
302 4TM3 FAD 0.01292 0.40947 5.98802
303 2Q2V NAD 0.003131 0.40786 5.98802
304 2B4Q NAP 0.001938 0.40618 5.98802
305 2GLX NDP 0.001074 0.43266 6.0241
306 4O1M NAD 0.001815 0.40732 6.03175
307 1NFQ NAI 0.00206 0.41363 6.15385
308 4JBI NDP 0.0003778 0.42718 6.21622
309 5L95 AMP 0.00001109 0.45095 6.25
310 1I0Z NAI 0.0000121 0.48816 6.28743
311 1VI2 NAD 0.001403 0.43466 6.28743
312 1H6C NDP 0.00003846 0.43278 6.28743
313 1NPD NAD 0.001558 0.42606 6.28743
314 3TTM PUT 0.02013 0.41928 6.28743
315 1BDB NAD 0.000526 0.41394 6.28743
316 2AWN ADP 0.03808 0.40722 6.28743
317 5VN0 NAI 0.003388 0.40658 6.28743
318 1H6C SIN 0.0001673 0.40583 6.28743
319 2Q1W NAD 0.0003929 0.42179 6.30631
320 3LU1 NAD 0.001256 0.41329 6.31868
321 9LDB NAD 0.000002154 0.50882 6.3253
322 9LDT NAD 0.000002501 0.50644 6.3253
323 3WV8 ATP 0.00001714 0.44449 6.42202
324 5LD5 NAD 0.00001232 0.51678 6.42458
325 3RKR NAP 0.02351 0.40705 6.48855
326 1C3V NDP 0.00001205 0.48126 6.53061
327 3WBF NAP 0.000002804 0.51864 6.55738
328 3WBF API 0.000004369 0.48628 6.55738
329 1UWK NAD 0.0001735 0.47153 6.58683
330 5KMS NAD 0.002869 0.43121 6.58683
331 3TN7 NJP 0.000621 0.42002 6.58683
332 5KMS FAD 0.002399 0.41596 6.58683
333 4CQM NAP 0.002132 0.40486 6.58683
334 4Q9N NAI 0.001938 0.40258 6.58683
335 1LDM NAD 0.000008586 0.49382 6.68693
336 5LPG 71V 0.02837 0.4067 6.70732
337 1MO9 FAD 0.003372 0.43978 6.88337
338 1MO9 KPC 0.003698 0.43859 6.88337
339 1BW9 NAD 0.000001094 0.56641 6.88623
340 1BXG NAD 0.0000007279 0.55113 6.88623
341 1C1X NAD 0.0000009103 0.54731 6.88623
342 1GR0 NAD 0.000002163 0.49097 6.88623
343 1KEV NDP 0.00001507 0.46162 6.88623
344 1UP7 NAD 0.001843 0.41999 6.88623
345 2C29 NAP 0.001234 0.418 6.88623
346 4J7U YTZ 0.0002249 0.46368 6.94444
347 4J7U NAP 0.0002249 0.46368 6.94444
348 1P1C SAH 0.003645 0.41395 7.03518
349 3AD8 NAD 0.001826 0.41821 7.07071
350 1Z6Z NAP 0.0006671 0.42355 7.0922
351 1XG5 NAP 0.0004112 0.42675 7.16846
352 2IZ1 ATR 0.00008831 0.5497 7.18563
353 5U5G NAP 0.000004246 0.51178 7.18563
354 4CLO NAP 0.0006133 0.43265 7.18563
355 3JQA NAP 0.0008055 0.42806 7.18563
356 3JQB NAP 0.0008879 0.42643 7.18563
357 3JQG NAP 0.0009076 0.42606 7.18563
358 4CM9 NAP 0.0008544 0.42557 7.18563
359 4CME NAP 0.0007956 0.42526 7.18563
360 4CMI NAP 0.0008275 0.42461 7.18563
361 4CLR NAP 0.0008485 0.42419 7.18563
362 4CM4 NAP 0.0008639 0.4239 7.18563
363 4CM8 NAP 0.0008853 0.42349 7.18563
364 3BMO NAP 0.0009057 0.42311 7.18563
365 5JDI NAP 0.0009167 0.42291 7.18563
366 5JCJ NAP 0.0009277 0.42272 7.18563
367 3JQF NAP 0.0007641 0.42143 7.18563
368 3BMQ NAP 0.0007749 0.42118 7.18563
369 1OBB NAD 0.00209 0.42084 7.18563
370 3JQ8 NAP 0.0009111 0.41865 7.18563
371 3JQ9 NAP 0.0009416 0.41806 7.18563
372 3BMN NAP 0.001046 0.41646 7.18563
373 3I6I NDP 0.0003657 0.40002 7.18563
374 3H9E NAD 0.0000491 0.47906 7.22543
375 1FK8 NAD 0.001387 0.42494 7.393
376 1U1I NAD 0.0000837 0.43804 7.39796
377 1D1T NAD 0.000000616 0.52203 7.48503
378 1U8X NAD 0.0003545 0.44523 7.48503
379 2BRY FAD 0.001617 0.41901 7.48503
380 1CER NAD 0.000007001 0.51239 7.55287
381 2AG8 NAP 0.00006357 0.49632 7.60456
382 2HJR APR 0.000007651 0.52538 7.62195
383 1N5D NDP 0.001487 0.40664 7.63889
384 1LUA NAP 0.0002222 0.47283 7.66551
385 2JL1 NAP 0.001391 0.43482 7.66551
386 3KO8 NAD 0.0008029 0.41125 7.69231
387 1QPR PHT 0.04505 0.40215 7.74648
388 4TQG NDP 0.0002303 0.44576 7.78443
389 5MSO NAP 0.001435 0.40982 7.78443
390 1PR9 NAP 0.0003317 0.4457 7.78689
391 3D3W NAP 0.0004325 0.44123 7.78689
392 1EDO NAP 0.00141 0.40366 7.78689
393 1F06 2NP 0.00003949 0.48309 7.8125
394 1F06 NDP 0.00003949 0.45002 7.8125
395 5J60 FAD 0.003773 0.41251 7.8125
396 4BV6 FAD 0.003098 0.41694 7.91075
397 2HK9 ATR 0.00001277 0.57132 8.08383
398 1PL6 NAD 0.00000205 0.56076 8.08383
399 5FI3 NAP 0.00001058 0.49054 8.08383
400 2HK9 NAP 0.00003157 0.48662 8.08383
401 4KOA NDP 0.0002941 0.48117 8.08383
402 4L8V NAP 0.00002861 0.47358 8.08383
403 1PL6 572 0.00001592 0.47201 8.08383
404 1LVL NAD 0.0009519 0.44552 8.08383
405 1O94 ADP 0.0004436 0.44835 8.125
406 1VL8 NAP 0.0004314 0.41847 8.2397
407 4YAG NAI 0.00781 0.40177 8.3045
408 2DTX BMA 0.0002993 0.4003 8.33333
409 3O26 NDP 0.001565 0.4155 8.36013
410 3TWO NDP 0.000001539 0.49144 8.38323
411 1WDK NAD 0.0000514 0.49097 8.38323
412 4OPC FDA 0.01608 0.41675 8.38323
413 1RP0 AHZ 0.0008444 0.40981 8.4507
414 1P77 ATR 0.000009233 0.59526 8.45588
415 1M0S CIT 0.01488 0.42128 8.6758
416 1TB4 PEJ 0.0004039 0.43153 8.68263
417 3SJ7 NDP 0.001216 0.41824 8.73016
418 4IDC 1XX 0.0003095 0.44686 8.73494
419 4IDC NDP 0.0003095 0.44686 8.73494
420 4EUE NAI 0.0007874 0.41061 8.85168
421 3O03 NAP 0.003945 0.40397 8.93471
422 5KKA 6V0 0.00000798 0.50679 8.97436
423 4RQU NAD 0.000003715 0.51399 8.98204
424 1U3U NAD 0.000003115 0.45005 8.98204
425 1U3U BNF 0.000003115 0.45005 8.98204
426 5KQA GSH 0.02841 0.40661 9.09091
427 2JHF NAD 0.00003637 0.54829 9.28144
428 1AE1 NAP 0.0002672 0.44934 9.28144
429 3H4V NAP 0.001674 0.42765 9.28144
430 3H4V DVP 0.001782 0.42758 9.28144
431 1HYH NAD 0.000001523 0.51293 9.38511
432 1YQD NAP 0.000009502 0.47492 9.58084
433 3CGD FAD 0.005746 0.42918 9.58084
434 3CGD COA 0.005746 0.42918 9.58084
435 3GEG NAD 0.002464 0.40925 9.7166
436 3QV1 NAD 0.000005702 0.4904 9.7561
437 1H5Q NAP 0.001887 0.40696 9.81132
438 1Z82 NDP 0.0001368 0.45788 9.88024
439 3F8D FAD 0.009234 0.4169 9.90712
440 2AHR NAP 0.001172 0.41349 10.0386
441 4JK3 NAD 0.0000003406 0.56413 10.1796
442 3ABI NAD 0.0000003441 0.54555 10.1796
443 1SAY PYR 0.0000022 0.4889 10.1796
444 1CZA G6P 0.006937 0.43386 10.1796
445 5G3U FDA 0.001167 0.43062 10.1796
446 3C1O NAP 0.0002845 0.42611 10.1796
447 5G3U ITW 0.003814 0.41619 10.1796
448 1CZA GLC 0.03178 0.40412 10.1796
449 4J4H 1J1 0.000003622 0.54091 10.479
450 4J4H NAI 0.000003622 0.42765 10.479
451 1VM6 NAD 0.00008474 0.47364 10.5263
452 1ZEM NAD 0.00045 0.44115 10.687
453 1XHL NDP 0.002337 0.41151 10.7744
454 2PK3 A2R 0.001071 0.44715 10.9034
455 1NYT NAP 0.0001582 0.46277 11.0701
456 2DFV NAD 0.000017 0.49296 11.0778
457 1R6D NAD 0.0008402 0.45019 11.0778
458 1R6D DAU 0.0009392 0.44733 11.0778
459 1HDG NAD 0.0000247 0.49511 11.1446
460 5N2I NAP 0.000009926 0.46311 11.2069
461 3NJ4 AFX 0.000126 0.51808 11.6766
462 3NJ4 NAD 0.000126 0.51808 11.6766
463 5M67 NAD 0.000028 0.50705 11.6766
464 5M67 ADE 0.00002867 0.50663 11.6766
465 5M67 3D1 0.00003875 0.50128 11.6766
466 2CDC NAP 0.0002002 0.48443 11.6766
467 5EPO NAP 0.0007531 0.42766 11.6766
468 2EV9 SKM 0.00007502 0.44818 11.7871
469 2EV9 NAP 0.00007502 0.44818 11.7871
470 3OND ADN 0.00002228 0.50998 11.976
471 1V8B NAD 0.000006214 0.46614 11.976
472 3OND NAD 0.00002228 0.40739 11.976
473 2PV7 NAD 0.000007129 0.50757 12.2754
474 1YKF NAP 0.00001905 0.48081 12.2754
475 5VKT NAP 0.00005874 0.47006 12.2754
476 4XDY NAI 0.0003958 0.44335 12.2754
477 4XQC NAD 0.000006532 0.43275 12.2754
478 4TSK NDP 0.001117 0.42559 12.2754
479 4XQC 13D 0.00000966 0.42377 12.2754
480 3B1F NAD 0.0000004744 0.58178 12.5749
481 2BKA NDP 0.0009043 0.42314 12.8099
482 2VHW NAI 0.000001025 0.49045 12.8743
483 5GT9 NAP 0.00009025 0.46454 12.8743
484 5E4R NAP 0.000976 0.42188 12.8743
485 4XDZ NDP 0.0007285 0.4153 12.8743
486 3U4C NDP 0.0005477 0.43143 13.1673
487 3KLJ FAD 0.0006869 0.4091 13.1737
488 1TE2 PGA 0.02522 0.41395 13.2743
489 4K26 NDP 0.001006 0.41285 13.4058
490 3LAD FAD 0.003245 0.41712 13.4731
491 1EZ4 NAD 0.000005544 0.49817 13.522
492 2VT3 ATP 0.0000002558 0.64712 13.7725
493 2DC1 NAD 0.000003259 0.52074 13.7725
494 4D3F NAP 0.000001713 0.49597 13.7725
495 4RVU NDP 0.0009036 0.4038 13.7725
496 2WPF FAD 0.006782 0.43255 14.0719
497 2WPF WPF 0.008143 0.43038 14.0719
498 1A5Z NAD 0.000002874 0.54862 14.3713
499 5BSH PRO 0.0002722 0.44759 14.3713
500 5H81 NAP 0.0000003823 0.58576 14.3959
501 1JAY NAP 0.0001384 0.4773 14.6226
502 2CVZ NDP 0.000004622 0.5195 14.9701
503 1W73 NAP 0.0003474 0.45269 14.9701
504 1W8D NAP 0.0004015 0.45012 14.9701
505 1W6U NAP 0.0008761 0.43628 14.9701
506 1WP4 NDP 0.0000007926 0.54452 15.5689
507 1CF2 NAP 0.000009353 0.48899 15.5689
508 2AE2 NAP 0.0002988 0.45644 16.1538
509 2AE2 PTO 0.0002988 0.45644 16.1538
510 4II2 ATP 0.0006048 0.45404 16.8675
511 3CH6 NAP 0.0005096 0.46496 18.5315
512 2G5C NAD 0.00001729 0.48162 18.8623
513 2GZ3 NAP 0.0001698 0.42735 18.8623
514 3GGO ENO 0.000007612 0.52137 19.4611
515 3GGO NAI 0.000007612 0.4392 19.4611
516 1WVG APR 0.003374 0.40944 19.4611
517 4W6Z 8ID 0.00006243 0.47823 20.0599
518 2F1K NAP 0.000002048 0.53343 20.4301
519 4YSX FAD 0.0008415 0.43851 21.7949
520 2VOH CIT 0.02821 0.42164 23.0769
521 1LSS NAD 0.00007426 0.4934 23.5714
522 2F5Z FAD 0.005877 0.40768 25
523 2O4C NAD 0.00000000002001 0.72033 36.5269
524 4ZGS NAD 0.000000000004979 0.70105 36.8263
525 1J49 NAD 0.00000000002047 0.71419 38.6228
526 1SC6 NAD 0.00000004468 0.56109 39.2216
527 4XYB NDP 0.00000000007332 0.63902 40.7186
528 1HKU NAD 0.000000000004433 0.71276 40.7821
529 5DN9 NAD 0.00000000003241 0.71762 43.7126
530 1DXY NAD 0.0000000001611 0.69514 43.8438
531 2GSD NAD 0.00000000008467 0.62756 45.2096
532 2NAD NAD 0.00000000009565 0.62601 45.2096
533 3KB6 NAD 0.00000000000002898 0.8325 47.6048
534 3KB6 LAC 0.001899 0.48349 47.6048
Pocket No.: 2; Query (leader) PDB : 2DBZ; Ligand: NAP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2dbz.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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